Rh7BG318000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003267
Physical Location & Seq
Reverse (-)
30818729 .. 30820126
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG318000.1

Sequence Viewer

Length: 1398 bp
ATGAGTCGAATGCAATCCATAGCCAAACTCTCAAACCATCTTATCAAACCCACAAACCACGCCTTCTGTTGGTGCCTCAAAAGCTACAACTCATGGGCTGCAGCCATACGCAGCTCTTCTTCCCCACATAAAGCTCTGCATATCTATTCTCAAATGCACCGGCAGTCTGTACCTTTCGACAGCTTCTCCATTCTCTTTACTCTAAAATCATGTACCCAATTGCATCATAACCACGCAACCATTCAACACCTCCATTCCCATATCGTTAAACTCGGGTTTGATTCTCACGTATACGTGGCCACTGCCCTTCTCCATGCTTACGTTGTCGTCTCGTTTGTGGATGCATGTAAACTGTTCGACGAAATGCCTGAGAAGAGCACAGTCACCTGGAACACAATGATTTCTGGGTATTCGAGGACCGGGAATGTAGAGAGAGCAACACTGGTGTTTGAGGAAATGCCAGTGAGAGATGTTTCATCATGGTGTGCAATGATCGCAGCCTATGTGAACAATGGCAAACATGAGCTTGGGTTATCACTGTTTCGGGATATGGTAATGGCTGAAGAAGGTGTGAAACCTGACCAAGTGACTGCAGTAGTGGTTTTATCTGGCTGTGCTCACTTGGGCTCTGTTGGGTTGTTGGTGGGGAAGTCAGTTCATGGGTTTATGGTCAAGAATCGGTGGGACATGAATGCGGAGCTCGGTACAGTTTTGATCAGCATGTATGCGAAATGTGGATTTTTAAAGGGAGCAGAACAGGTTTTTGAGTTGATGCAAGAGAAGAATGTGATGGCTTGGACTGCATTGATTTGTGGATCAGCACAACATGGCTACAGCAAAGAAGCATTGTGTTTGTTTGAGACAATGCAAAAAGCCGGTGTAAGACCTAATGAACTGACTTTCACAGGAGTTCTTAGTGCTTGTGTGAACATGGGACTAGTTGATGAGGGTCGAAAATATTTCAATCTGATTGAAGAAAGTGGCTTGGAGCTTAGGATTCAGCATTATGGATGCATGGTCGATTTGTATGGCAAGGTGGGGCTGTTAGAGGAAGCGTATGATTTTATTAAGAACATGAAACTTGAACCCAATATTGCTGTCTGGGGAGCTTTTTTGTCGGCTTGTAAGGAGCATAAGCAGTTTGAGATGGCCGAAAGAGTAGTTGAGCAGGTCATGAAGATGGTGAAACCAGAAACTGATAGTGGGGTTTACTCTCTTATTGCCGATTTGTATGTTTTGGGTGGGAAGTGGGATGATGCTGAAAGAGTGAGGAGTCTGATGGCGAACCACAAGGTGAGGAAGATCAGGGGCTCTAGTTTTATTCAAGTGGATGGTAGAGAAAACCAATTTTATATGCCGCTCCCAACTTATAAAGCTTATCTGAATGATTTATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

465

Amino Acids

52.24

Weight (kDa)

7.29

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 126 - 158 1.6e-07 PPR repeat family
PPR_1 PF12854 127 - 153 5.9e-07 PPR repeat
PPR PF01535 128 - 156 1.7e-08 PPR repeat
PPR_2 PF13041 157 - 207 2.9e-08 PPR repeat family
PPR_2 PF13041 261 - 310 2.6e-11 PPR repeat family
PPR_3 PF13812 262 - 311 1.2e-06 Pentatricopeptide repeat domain
E_motif PF20431 378 - 442 2.4e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1371
Acc36I ACCTGC 1 cut(s) 1159
AccB1I GGYRCC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 1360
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 695, 1358
AclWI GGATC 1 cut(s) 823
AcoI YGGCCR 2 cut(s) 297, 1149
AcuI CTGAAG 1 cut(s) 582
AdeI CACNNNGTG 1 cut(s) 1294
AfaI GTAC 3 cut(s) 171, 214, 706
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 5 cut(s) 245, 964, 974, 1085, 1325
AhlI ACTAGT 1 cut(s) 937
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 9 cut(s) 84, 114, 134, 183, 526, 700, 991, 1109, 1376
AluI AGCT 9 cut(s) 84, 114, 134, 183, 526, 700, 991, 1109, 1376
Alw21I GWGCWC 3 cut(s) 380, 619, 702
Alw26I GTCTC 2 cut(s) 334, 854
AlwI GGATC 1 cut(s) 823
AlwNI CAGNNNCTG 1 cut(s) 1196
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 297, 1149
ApeKI GCWGC 4 cut(s) 98, 101, 111, 497
AspS9I GGNCC 1 cut(s) 417
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 3 cut(s) 376, 1195, 1306
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 417
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 3 cut(s) 629, 702, 1313
Bbv12I GWGCWC 3 cut(s) 380, 619, 702
BbvI GCAGC 4 cut(s) 85, 113, 123, 509
BccI CCATC 6 cut(s) 45, 784, 1141, 1174, 1273, 1325
BciT130I CCWGG 1 cut(s) 388
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 334, 854
BcuI ACTAGT 1 cut(s) 937
BfaI CTAG 3 cut(s) 938, 1314, 1396
BfmI CTRYAG 3 cut(s) 99, 591, 832
BfuAI ACCTGC 1 cut(s) 1159
BisI GCNGC 5 cut(s) 99, 102, 112, 498, 1358
BlsI GCNGC 5 cut(s) 100, 103, 113, 499, 1359
Bme1390I CCNGG 2 cut(s) 388, 421
Bme18I GGWCC 1 cut(s) 417
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 2 cut(s) 388, 421
BmsI GCATC 5 cut(s) 232, 331, 762, 1001, 1246
Bpu10I CCTNAGC 1 cut(s) 992
BpuMI CCSGG 1 cut(s) 421
BsaAI YACGTR 2 cut(s) 289, 295
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 2 cut(s) 159, 875
Bse1I ACTGG 2 cut(s) 447, 461
Bse3DI GCAATG 1 cut(s) 495
BseBI CCWGG 1 cut(s) 388
BseGI GGATG 4 cut(s) 346, 1016, 1258, 1336
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 447, 461
BseRI GAGGAG 1 cut(s) 1285
BseXI GCAGC 4 cut(s) 85, 113, 123, 509
BshFI GGCC 2 cut(s) 299, 1151
BshNI GGYRCC 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 380, 619, 702
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 3 cut(s) 160, 420, 876
BslFI GGGAC 2 cut(s) 698, 948
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 334, 854
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 2 cut(s) 698, 948
BsmI GAATGC 2 cut(s) 15, 697
BsnI GGCC 2 cut(s) 299, 1151
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 5 cut(s) 380, 619, 629, 702, 1313
Bsp143I GATC 4 cut(s) 492, 714, 815, 1302
BspACI CCGC 2 cut(s) 695, 1358
BspANI GGCC 2 cut(s) 299, 1151
BspCNI CTCAG 1 cut(s) 361
BspHI TCATGA 1 cut(s) 1173
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 2 cut(s) 103, 595
BspMI ACCTGC 1 cut(s) 1159
BspPI GGATC 1 cut(s) 823
BspQI GCTCTTC 2 cut(s) 121, 368
BspT107I GGYRCC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 1360
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 2 cut(s) 159, 875
BsrI ACTGG 2 cut(s) 447, 461
BssAI RCCGGY 2 cut(s) 159, 875
BssMI GATC 4 cut(s) 492, 714, 815, 1302
BssNAI GTATAC 1 cut(s) 292
Bst1107I GTATAC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 4 cut(s) 354, 382, 540, 709
Bst6I CTCTTC 2 cut(s) 121, 368
BstBAI YACGTR 2 cut(s) 289, 295
BstDEI CTNAG 3 cut(s) 369, 914, 992
BstF5I GGATG 4 cut(s) 346, 1016, 1258, 1336
BstKTI GATC 4 cut(s) 495, 717, 818, 1305
BstMAI GTCTC 2 cut(s) 334, 854
BstMBI GATC 4 cut(s) 492, 714, 815, 1302
BstMWI GCNNNNNNNGC 3 cut(s) 81, 494, 800
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 2 cut(s) 348, 724
BstSCI CCNGG 2 cut(s) 386, 419
BstSFI CTRYAG 3 cut(s) 99, 591, 832
BstV1I GCAGC 4 cut(s) 85, 113, 123, 509
BstZ17I GTATAC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 299, 1151
BtsCI GGATG 4 cut(s) 346, 1016, 1258, 1336
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 4 cut(s) 300, 440, 468, 536
BveI ACCTGC 1 cut(s) 1159
CaiI CAGNNNCTG 1 cut(s) 1196
CciI TCATGA 1 cut(s) 1173
Cfr10I RCCGGY 2 cut(s) 159, 875
Cfr13I GGNCC 1 cut(s) 417
Csp6I GTAC 3 cut(s) 170, 213, 705
CviQI GTAC 3 cut(s) 170, 213, 705
DdeI CTNAG 3 cut(s) 369, 914, 992
DpnI GATC 4 cut(s) 494, 716, 817, 1304
DpnII GATC 4 cut(s) 492, 714, 815, 1302
DraI TTTAAA 1 cut(s) 744
DraIII CACNNNGTG 1 cut(s) 1294
EaeI YGGCCR 2 cut(s) 297, 1149
Eam1104I CTCTTC 2 cut(s) 121, 368
EarI CTCTTC 2 cut(s) 121, 368
Ecl136II GAGCTC 1 cut(s) 700
Eco24I GRGCYC 3 cut(s) 629, 702, 1313
Eco47I GGWCC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 700
EcoRII CCWGG 1 cut(s) 386
EcoT22I ATGCAT 2 cut(s) 346, 1016
EcoT38I GRGCYC 3 cut(s) 629, 702, 1313
Esp3I CGTCTC 1 cut(s) 334
FaqI GGGAC 2 cut(s) 698, 948
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 5 cut(s) 99, 102, 112, 498, 1358
FokI GGATG 4 cut(s) 353, 1023, 1265, 1343
FriOI GRGCYC 3 cut(s) 629, 702, 1313
Fsp4HI GCNGC 5 cut(s) 99, 102, 112, 498, 1358
FspBI CTAG 3 cut(s) 938, 1314, 1396
GluI GCNGC 5 cut(s) 99, 102, 112, 498, 1358
HaeIII GGCC 2 cut(s) 299, 1151
HapII CCGG 3 cut(s) 160, 420, 876
HindIII AAGCTT 1 cut(s) 1374
HinfI GANTC 5 cut(s) 4, 281, 676, 997, 1273
HpaII CCGG 3 cut(s) 160, 420, 876
HphI GGTGA 3 cut(s) 376, 1195, 1306
Hpy166II GTNNAC 5 cut(s) 292, 350, 508, 928, 1210
Hpy188I TCNGA 3 cut(s) 969, 1278, 1383
Hpy188III TCNNGA 3 cut(s) 545, 673, 1174
Hpy8I GTNNAC 5 cut(s) 292, 350, 508, 928, 1210
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 3 cut(s) 73, 317, 560
HpyCH4III ACNGT 4 cut(s) 354, 382, 540, 709
HpyCH4IV ACGT 3 cut(s) 288, 294, 321
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 494, 800
HpyF3I CTNAG 3 cut(s) 369, 914, 992
HpySE526I ACGT 3 cut(s) 288, 294, 321
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 4 cut(s) 492, 714, 815, 1302
LguI GCTCTTC 2 cut(s) 121, 368
LmnI GCTCC 6 cut(s) 697, 749, 988, 1106, 1129, 1365
Lsp1109I GCAGC 4 cut(s) 85, 113, 123, 509
LweI GCATC 5 cut(s) 232, 331, 762, 1001, 1246
MaeI CTAG 3 cut(s) 938, 1314, 1396
MaeII ACGT 3 cut(s) 288, 294, 321
MaeIII GTNAC 2 cut(s) 382, 586
MalI GATC 4 cut(s) 494, 716, 817, 1304
MbiI CCGCTC 1 cut(s) 1360
MboI GATC 4 cut(s) 492, 714, 815, 1302
MboII GAAGA 8 cut(s) 108, 111, 385, 575, 793, 986, 1189, 1312
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 5 cut(s) 380, 619, 629, 702, 1313
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 2 cut(s) 218, 1346
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 2 cut(s) 13, 1282
MnlI CCTC 8 cut(s) 86, 260, 408, 445, 940, 1042, 1263, 1290
Mox20I TGGCCA 1 cut(s) 299
Mph1103I ATGCAT 2 cut(s) 346, 1016
MscI TGGCCA 1 cut(s) 299
MseI TTAA 3 cut(s) 267, 743, 1068
MslI CAYNNNNRTG 2 cut(s) 481, 1178
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 3 cut(s) 160, 420, 876
MspR9I CCNGG 2 cut(s) 388, 421
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 2 cut(s) 15, 697
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 3 cut(s) 81, 494, 800
NciI CCSGG 1 cut(s) 421
NdeII GATC 4 cut(s) 492, 714, 815, 1302
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 2 cut(s) 382, 586
NsiI ATGCAT 2 cut(s) 346, 1016
NspI RCATGY 2 cut(s) 348, 724
PagI TCATGA 1 cut(s) 1173
PciSI GCTCTTC 2 cut(s) 121, 368
PctI GAATGC 2 cut(s) 15, 697
PfeI GAWTC 3 cut(s) 281, 676, 997
PkrI GCNGC 5 cut(s) 100, 103, 113, 499, 1359
PleI GAGTC 2 cut(s) 12, 1281
PpsI GAGTC 2 cut(s) 12, 1281
Ppu21I YACGTR 2 cut(s) 289, 295
PsiI TTATAA 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 417
PstI CTGCAG 2 cut(s) 103, 595
PstNI CAGNNNCTG 1 cut(s) 1196
RsaI GTAC 3 cut(s) 171, 214, 706
RsaNI GTAC 3 cut(s) 170, 213, 705
RseI CAYNNNNRTG 2 cut(s) 481, 1178
SacI GAGCTC 1 cut(s) 702
SapI GCTCTTC 2 cut(s) 121, 368
SaqAI TTAA 3 cut(s) 267, 743, 1068
SatI GCNGC 5 cut(s) 99, 102, 112, 498, 1358
Sau3AI GATC 4 cut(s) 492, 714, 815, 1302
Sau96I GGNCC 1 cut(s) 417
SchI GAGTC 2 cut(s) 13, 1282
ScrFI CCNGG 2 cut(s) 388, 421
SduI GDGCHC 5 cut(s) 380, 619, 629, 702, 1313
SfaNI GCATC 5 cut(s) 232, 331, 762, 1001, 1246
SfcI CTRYAG 3 cut(s) 99, 591, 832
SinI GGWCC 1 cut(s) 417
SmiMI CAYNNNNRTG 2 cut(s) 481, 1178
SpeI ACTAGT 1 cut(s) 937
Sse9I AATT 2 cut(s) 218, 1346
SsiI CCGC 2 cut(s) 695, 1358
SspI AATATT 2 cut(s) 959, 1093
SspMI CTAG 3 cut(s) 938, 1314, 1396
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 2 cut(s) 386, 419
TaaI ACNGT 4 cut(s) 354, 382, 540, 709
TaiI ACGT 3 cut(s) 291, 297, 324
TaqI TCGA 6 cut(s) 7, 177, 357, 413, 952, 1020
TasI AATT 2 cut(s) 218, 1346
TauI GCSGC 1 cut(s) 1360
TfiI GAWTC 3 cut(s) 281, 676, 997
Tru1I TTAA 3 cut(s) 267, 743, 1068
Tru9I TTAA 3 cut(s) 267, 743, 1068
TscAI CASTG 4 cut(s) 307, 447, 468, 543
TseFI GTSAC 2 cut(s) 382, 586
TseI GCWGC 4 cut(s) 98, 101, 111, 497
Tsp45I GTSAC 2 cut(s) 382, 586
TspDTI ATGAA 6 cut(s) 465, 647, 704, 906, 1091, 1190
TspRI CASTG 4 cut(s) 307, 447, 468, 543
VpaK11BI GGWCC 1 cut(s) 417
XceI RCATGY 2 cut(s) 348, 724
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 3 cut(s) 938, 1314, 1396
Zsp2I ATGCAT 2 cut(s) 346, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.