Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023070.1

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Reverse (-)

19117 .. 20058

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023070.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgcaatccatagccaaactctcaaactatcttatcaaacccacaaaccgcgccttctgttggttcctcaaaagctacaactcatggggtgcagccatacgcagctcttcttccccacataaagctctgcatatctattctcaaatgcactggctgtctgtacctttcgacagcttctccattctctttactctaaaatcatgtacccaattgcataaccacgcaaccattcaacaactccattcccatatcgttaaactcggatttgattctcacgtatatgtggccacttcacttctccatgcttacgtcgtcatctcgtttgtggatgcatgtgaactcttcgacgaaatgcctgagaagagcagtgtcacctggaacacaatgatttccgggtattcgaggaccgggaatgtagagagagcaagcctggtgtttgaggaaatgccactgagagatgtttcatcatggtgtgcaatggtcgcagcttatgtgaacaatggcaaacatgagcttgggttatcactctttcgggatatggtaatgggtgaagttggtgtgaaacctgaccaagggactgcagtagtggttttatctggctgtgctcacttgggttctgttgggttgttggtggggaagtcagttcatgggtttatggtcaagaaccggtgggagatgaatgtggagctcggtacagttttgattggcatgtatgcgaaatgtgggtttttgaagggagcagaacaggtttttgagttgatgcaagagaagaatgtgatggcttggaccgcattgatttgtggatcggcacaacatggatacagcaaagaagcattgtgtttgtttgagatgatgcaaaacagcggcgtaagacctaatgaactgacttttacaggagttctcagtgcttgtgtgaacacgggactagttgaggagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

313

Amino Acids

34.61

Weight (kDa)

6.66

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	49, 789, 864
AclWI	GGATC	1 cut(s)	811
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	3 cut(s)	162, 205, 694
AfiI	CCNNNNNNNGG	2 cut(s)	60, 572
AgeI	ACCGGT	1 cut(s)	666
AgsI	TTSAA	2 cut(s)	233, 733
AhlI	ACTAGT	1 cut(s)	925
AjnI	CCWGG	2 cut(s)	374, 429
AluBI	AGCT	7 cut(s)	75, 105, 125, 174, 488, 514, 688
AluI	AGCT	7 cut(s)	75, 105, 125, 174, 488, 514, 688
Alw21I	GWGCWC	2 cut(s)	607, 690
AlwI	GGATC	1 cut(s)	811
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	3 cut(s)	92, 102, 485
AsiGI	ACCGGT	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	405, 786
AsuC2I	CCSGG	2 cut(s)	394, 409
AsuHPI	GGTGA	2 cut(s)	364, 560
AvaII	GGWCC	2 cut(s)	405, 786
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	607, 690
BbvI	GCAGC	3 cut(s)	104, 114, 497
BccI	CCATC	1 cut(s)	772
BciT130I	CCWGG	2 cut(s)	376, 431
BciVI	GTATCC	1 cut(s)	812
BcnI	CCSGG	2 cut(s)	394, 409
BcuI	ACTAGT	1 cut(s)	925
BfaI	CTAG	1 cut(s)	926
BfmI	CTRYAG	1 cut(s)	579
BfuI	GTATCC	1 cut(s)	812
BisI	GCNGC	4 cut(s)	93, 103, 486, 865
BlsI	GCNGC	4 cut(s)	94, 104, 487, 866
Bme1390I	CCNGG	4 cut(s)	376, 394, 409, 431
Bme18I	GGWCC	2 cut(s)	405, 786
BmgT120I	GGNCC	2 cut(s)	405, 786
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	4 cut(s)	376, 394, 409, 431
BmsI	GCATC	3 cut(s)	319, 750, 843
BpuMI	CCSGG	2 cut(s)	394, 409
BsaAI	YACGTR	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	571
BsaWI	WCCGGW	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 572
Bse118I	RCCGGY	1 cut(s)	666
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	376, 431
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	60, 572
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	348, 443, 916
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	3 cut(s)	104, 114, 497
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	287
BshTI	ACCGGT	1 cut(s)	666
BsiHKAI	GWGCWC	2 cut(s)	607, 690
BsiSI	CCGG	3 cut(s)	393, 408, 667
BslFI	GGGAC	2 cut(s)	589, 936
BslI	CCNNNNNNNGG	2 cut(s)	60, 572
BsmFI	GGGAC	2 cut(s)	589, 936
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	607, 690
Bsp143I	GATC	1 cut(s)	803
BspACI	CCGC	3 cut(s)	49, 789, 864
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	3 cut(s)	349, 444, 915
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	583
BspPI	GGATC	1 cut(s)	811
BspQI	GCTCTTC	2 cut(s)	112, 356
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	376, 431
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	3 cut(s)	112, 347, 356
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	357, 452, 902
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	1 cut(s)	806
BstMBI	GATC	1 cut(s)	803
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 788
BstNI	CCWGG	2 cut(s)	376, 431
BstNSI	RCATGY	2 cut(s)	336, 712
BstSCI	CCNGG	4 cut(s)	374, 392, 407, 429
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	104, 114, 497
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	4 cut(s)	148, 373, 449, 910
Cac8I	GCNNGC	1 cut(s)	427
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	405, 786
Csp6I	GTAC	3 cut(s)	161, 204, 693
CspAI	ACCGGT	1 cut(s)	666
CviAII	CATG	9 cut(s)	84, 201, 302, 333, 468, 509, 647, 709, 815
CviQI	GTAC	3 cut(s)	161, 204, 693
DdeI	CTNAG	3 cut(s)	357, 452, 902
DpnI	GATC	1 cut(s)	805
DpnII	GATC	1 cut(s)	803
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	3 cut(s)	112, 347, 356
EarI	CTCTTC	3 cut(s)	112, 347, 356
Ecl136II	GAGCTC	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	405, 786
Eco53kI	GAGCTC	1 cut(s)	688
EcoICRI	GAGCTC	1 cut(s)	688
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	374, 429
EcoT14I	CCWWGG	1 cut(s)	571
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	9 cut(s)	87, 204, 305, 336, 471, 512, 650, 712, 818
FaqI	GGGAC	2 cut(s)	589, 936
FatI	CATG	9 cut(s)	83, 200, 301, 332, 467, 508, 646, 708, 814
Fnu4HI	GCNGC	4 cut(s)	93, 103, 486, 865
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	4 cut(s)	93, 103, 486, 865
FspBI	CTAG	1 cut(s)	926
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	4 cut(s)	93, 103, 486, 865
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	3 cut(s)	393, 408, 667
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	9 cut(s)	87, 204, 305, 336, 471, 512, 650, 712, 818
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	3 cut(s)	393, 408, 667
HphI	GGTGA	2 cut(s)	364, 560
Hpy166II	GTNNAC	3 cut(s)	338, 496, 916
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	2 cut(s)	533, 661
Hpy8I	GTNNAC	3 cut(s)	338, 496, 916
Hpy99I	CGWCG	2 cut(s)	314, 350
HpyAV	CCTTC	2 cut(s)	64, 727
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	2 cut(s)	276, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 788
HpyF3I	CTNAG	3 cut(s)	357, 452, 902
HpySE526I	ACGT	2 cut(s)	276, 309
Hsp92II	CATG	9 cut(s)	87, 204, 305, 336, 471, 512, 650, 712, 818
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	803
LguI	GCTCTTC	2 cut(s)	112, 356
LmnI	GCTCC	2 cut(s)	685, 737
Lsp1109I	GCAGC	3 cut(s)	104, 114, 497
LweI	GCATC	3 cut(s)	319, 750, 843
MaeI	CTAG	1 cut(s)	926
MaeII	ACGT	2 cut(s)	276, 309
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	805
MboI	GATC	1 cut(s)	803
MboII	GAAGA	5 cut(s)	99, 102, 334, 373, 781
MfeI	CAATTG	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	607, 690
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	287
MnlI	CCTC	5 cut(s)	77, 396, 433, 925, 928
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	279, 469
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	864
MspI	CCGG	3 cut(s)	393, 408, 667
MspR9I	CCNGG	4 cut(s)	376, 394, 409, 431
MunI	CAATTG	1 cut(s)	209
MvaI	CCWGG	2 cut(s)	376, 431
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	482, 788
NciI	CCSGG	2 cut(s)	394, 409
NdeII	GATC	1 cut(s)	803
NlaIII	CATG	9 cut(s)	87, 204, 305, 336, 471, 512, 650, 712, 818
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	336, 712
PciSI	GCTCTTC	2 cut(s)	112, 356
PfeI	GAWTC	1 cut(s)	269
PinAI	ACCGGT	1 cut(s)	666
PkrI	GCNGC	4 cut(s)	94, 104, 487, 866
Ppu21I	YACGTR	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	374, 429
PspGI	CCWGG	2 cut(s)	374, 429
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	405, 786
PstI	CTGCAG	1 cut(s)	583
RsaI	GTAC	3 cut(s)	162, 205, 694
RsaNI	GTAC	3 cut(s)	161, 204, 693
RseI	CAYNNNNRTG	2 cut(s)	279, 469
SacI	GAGCTC	1 cut(s)	690
SapI	GCTCTTC	2 cut(s)	112, 356
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	4 cut(s)	93, 103, 486, 865
Sau3AI	GATC	1 cut(s)	803
Sau96I	GGNCC	2 cut(s)	405, 786
ScrFI	CCNGG	4 cut(s)	376, 394, 409, 431
SduI	GDGCHC	2 cut(s)	607, 690
SfaNI	GCATC	3 cut(s)	319, 750, 843
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	2 cut(s)	405, 786
SmiMI	CAYNNNNRTG	2 cut(s)	279, 469
SpeI	ACTAGT	1 cut(s)	925
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	3 cut(s)	49, 789, 864
SspMI	CTAG	1 cut(s)	926
SstI	GAGCTC	1 cut(s)	690
StyD4I	CCNGG	4 cut(s)	374, 392, 407, 429
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	2 cut(s)	279, 312
TaqI	TCGA	3 cut(s)	168, 345, 401
TasI	AATT	1 cut(s)	209
TauI	GCSGC	1 cut(s)	867
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	155, 373, 456, 910
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	92, 102, 485
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	453, 635, 692, 894
TspRI	CASTG	4 cut(s)	155, 373, 456, 910
VpaK11BI	GGWCC	2 cut(s)	405, 786
XagI	CCTNNNNNAGG	1 cut(s)	570
XceI	RCATGY	2 cut(s)	336, 712
XspI	CTAG	1 cut(s)	926
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.