Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8317561.1

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 513

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8317561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgccactgagagatgtttcatcatggtgtgcaatggtcgcagcttatgtgaacaatggcaaacatgagcttgggttatcactctttcgggatatggtaatgggtgaagttggtgtgaaacctgaccaagggactgcagtagtggttttatctggctgtgctcacttgggttctgttgggttgttggtggggaagtcagttcatgggtttatggtcaagaaccggtgggagatgaatgtggagctcggtacagttttgattggcatgtatgcgaaatgtgggtttttgaagggagcagaacaggtttttgagttgatgcaagagaagaatgtgatggcttggaccgcattgatttgtggatcggcacaacatggatacagcaaagaagcattgtgtttgtttgagatgatgcaaaacagcggcgtaagacctaatgaactgacttttacaggagttctcagtgcttgtgtgaacacgggactagttgaggagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

165

Amino Acids

17.77

Weight (kDa)

5.78

Isoelectric Point (pI)

17.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	345, 420
AclWI	GGATC	1 cut(s)	367
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgeI	ACCGGT	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	289
AhlI	ACTAGT	1 cut(s)	481
AluBI	AGCT	3 cut(s)	44, 70, 244
AluI	AGCT	3 cut(s)	44, 70, 244
Alw21I	GWGCWC	2 cut(s)	163, 246
AlwI	GGATC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	163, 246
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	368
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	368
BisI	GCNGC	2 cut(s)	42, 421
BlsI	GCNGC	2 cut(s)	43, 422
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	342
BmsI	GCATC	2 cut(s)	306, 399
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	163, 246
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	2 cut(s)	145, 492
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	145, 492
Bsp1286I	GDGCHC	2 cut(s)	163, 246
Bsp143I	GATC	1 cut(s)	359
BspACI	CCGC	2 cut(s)	345, 420
BspCNI	CTCAG	1 cut(s)	471
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	8, 458
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 344
BstNSI	RCATGY	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	5, 466
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	249
CspAI	ACCGGT	1 cut(s)	222
CviAII	CATG	5 cut(s)	24, 65, 203, 265, 371
CviJI	RGCY	5 cut(s)	44, 70, 156, 244, 338
CviKI_1	RGCY	5 cut(s)	44, 70, 156, 244, 338
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	8, 458
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	5 cut(s)	27, 68, 206, 268, 374
FaiI	YATR	9 cut(s)	25, 48, 66, 95, 204, 212, 266, 270, 372
FaqI	GGGAC	2 cut(s)	145, 492
FatI	CATG	5 cut(s)	23, 64, 202, 264, 370
Fnu4HI	GCNGC	2 cut(s)	42, 421
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	42, 421
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	2 cut(s)	42, 421
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	5 cut(s)	27, 68, 206, 268, 374
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	52, 472
Hpy188III	TCNNGA	2 cut(s)	89, 217
Hpy8I	GTNNAC	2 cut(s)	52, 472
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	32, 137, 319, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 344
HpyF3I	CTNAG	2 cut(s)	8, 458
Hsp92II	CATG	5 cut(s)	27, 68, 206, 268, 374
Kzo9I	GATC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	241, 293
LpnPI	CCDG	5 cut(s)	135, 138, 236, 287, 435
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	2 cut(s)	306, 399
MaeI	CTAG	1 cut(s)	482
MalI	GATC	1 cut(s)	361
MboI	GATC	1 cut(s)	359
MboII	GAAGA	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	163, 246
MnlI	CCTC	2 cut(s)	481, 484
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	38, 344
NdeII	GATC	1 cut(s)	359
NlaIII	CATG	5 cut(s)	27, 68, 206, 268, 374
NspI	RCATGY	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	43, 422
Psp124BI	GAGCTC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	2 cut(s)	42, 421
Sau3AI	GATC	1 cut(s)	359
Sau96I	GGNCC	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	163, 246
SetI	ASST	6 cut(s)	46, 72, 124, 246, 306, 433
SfaNI	GCATC	2 cut(s)	306, 399
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	25
SpeI	ACTAGT	1 cut(s)	481
SsiI	CCGC	2 cut(s)	345, 420
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	253
TauI	GCSGC	1 cut(s)	423
TscAI	CASTG	2 cut(s)	12, 466
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	9, 191, 248, 450
TspRI	CASTG	2 cut(s)	12, 466
VpaK11BI	GGWCC	1 cut(s)	342
XagI	CCTNNNNNAGG	1 cut(s)	126
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.