Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003267

Physical Location & Seq

Genomic Coordinates Reverse (-)

15929031 .. 15930047

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG156200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCTAAGTGTCGGTTTTTGGACGCAGCGGCCAGGCTGTTGGCATTTTTGCATGCAAGAGAGGGATTTGAAGACTTGGAATATGCATTTTTGTCGAACGGTGCAAAAAGGCTACACAAAAGGGCCGTTATATGTATTCGAGAATTTGCAAAAAGCCAGTGTGAGACCTAATGAGCTAACTTTCAAGGAAGTTCTTAATGCTAGTGTGCATTCAGGACTAGTCAAGGAGGGGCGGGAATATTTCAAGTTGATTGAAGGATGTGGTTTGAAGCCTAGTATTCAACACTATCGATCCATGGTCCAACTATATAGTAATGCAAGGCAGGTAGAGGAAGCTTATAAGGTGATTAAGAACATGAAACTTGAATCTGATGTTGTGGTCTGGAGTTCTTTACTGTCTGCTTGTGAGAAGCACAGACAGTTTGGGATGGCGGAAAGAGTAGCTAAGGAGATCATGAAGACAGTGAAGCCAGACAACAAAAGTCGTGTTCAGCTTCATTCTCTGGTCCAACTATATAGTAATGCTTATAAGGTTATTAAGAACATAAAAGTTGAACCTGATGTTGAGGCCTGGAGTTCTTTTCTGTCTGCTTGTAAGGAGCACAAACAGTTTGGGATGGCGGAAAGAGTAGCTAGGGAGGTCATGAAGACAGTGAAGCCAGACAGCAAACATGGTGCTCGGCTTCATCCTCTGATCCAACTATATAGTAATGCAGGCCTGCTAGAGGAAGCTTATAAGGTTATCAACGACATGAAACTTAAACCTTATGTTGCGTCCTGGATTTCTTTTCTCTCTGCTTGTAAGGAGCACAAACAGTTTGGGATGGCTGAAAGAATAGCTGAAACGGTCATGATGACAGTGAAGCCGGACAACAAACATGGTGCTCCGCTTCATTCTCATATCTCAGATATGAAGGATTTGAGAAAGTCAATGGCCAATCCAAATTTAGGGAAGATACATGATTTGCTGCAAATATTTGACGAAGACCAGGGAGCTATATGTTTTGATGCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

338

Amino Acids

38.87

Weight (kDa)

9.25

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13211 FvH4_3g13220
malus_domestica	MD10G1225900.v1.1
prunus_persica	Prupe.4G119500_v2.0.a1 Prupe.4G119600_v2.0.a1
pyrus_communis	pycom10g18980
rosa_chinensis	RchiOBHm_Chr5g0021561 RchiOBHm_Chr5g0021571 RchiOBHm_Chr7g0219451
rosa_laevigata	RLG00000032615
rosa_multiflora	Rmu_co8317561.1_g000001 Rmu_co8317561.1_g000002 Rmu_co8347725.1_g000001 Rmu_sc0002052.1_g000015 Rmu_sc0002052.1_g000016 Rmu_sc0002052.1_g000017 Rmu_sc0003767.1_g000012 Rmu_sc0023070.1_g000006 Rmu_sc0023070.1_g000007 Rmu_sc0023070.1_g000008
rosa_roxburghii	Rroxscaffold_1G00057070 Rroxscaffold_1G00057080 Rroxscaffold_1G00057090
rosa_rugosa	Rorug05G0067400 Rorug05G0067400 Rorug07G0185200
rosa_samantha	Rh5AG156800 Rh5BG156000 Rh5BG156100 Rh5BG156200 Rh5CG170300 Rh5CG170400 Rh5DG156600 Rh7AG328000 Rh7BG318000 Rh7CG345400
rosa_wichuraiana	Rw7G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	339, 528, 735
Acc36I	ACCTGC	1 cut(s)	313
AciI	CCGC	5 cut(s)	28, 232, 431, 620, 887
AclWI	GGATC	2 cut(s)	285, 688
AcoI	YGGCCR	2 cut(s)	29, 933
AcsI	RAATTY	2 cut(s)	142, 943
AfiI	CCNNNNNNNGG	2 cut(s)	724, 947
AgsI	TTSAA	8 cut(s)	70, 184, 244, 254, 268, 281, 365, 554
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	4 cut(s)	31, 569, 776, 987
AluBI	AGCT	8 cut(s)	175, 335, 443, 493, 632, 731, 839, 995
AluI	AGCT	8 cut(s)	175, 335, 443, 493, 632, 731, 839, 995
Alw21I	GWGCWC	4 cut(s)	603, 679, 810, 886
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	285, 688
AoxI	GGCC	5 cut(s)	29, 122, 567, 715, 933
ApeKI	GCWGC	2 cut(s)	25, 967
ApoI	RAATTY	2 cut(s)	142, 943
AspS9I	GGNCC	3 cut(s)	122, 298, 505
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	298, 505
BalI	TGGCCA	1 cut(s)	935
BbsI	GAAGAC	4 cut(s)	77, 464, 653, 990
Bbv12I	GWGCWC	4 cut(s)	603, 679, 810, 886
BbvI	GCAGC	2 cut(s)	37, 954
BccI	CCATC	3 cut(s)	421, 610, 817
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	4 cut(s)	33, 571, 778, 989
BcoDI	GTCTC	1 cut(s)	157
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	5 cut(s)	201, 218, 273, 633, 722
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	3 cut(s)	26, 29, 968
BlsI	GCNGC	3 cut(s)	27, 30, 969
Bme1390I	CCNGG	4 cut(s)	33, 571, 778, 989
Bme18I	GGWCC	2 cut(s)	298, 505
BmgT120I	GGNCC	3 cut(s)	122, 298, 505
BmrFI	CCNGG	4 cut(s)	33, 571, 778, 989
BmsI	GCATC	1 cut(s)	997
BpiI	GAAGAC	4 cut(s)	77, 464, 653, 990
BpmI	CTGGAG	2 cut(s)	403, 592
Bpu10I	CCTNAGC	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	294, 988
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 947
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	4 cut(s)	33, 571, 778, 989
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	294, 988
BseGI	GGATG	5 cut(s)	263, 432, 621, 685, 828
BseLI	CCNNNNNNNGG	2 cut(s)	724, 947
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	37, 954
BshFI	GGCC	5 cut(s)	31, 124, 569, 717, 935
BshVI	ATCGAT	1 cut(s)	289
BsiHKAI	GWGCWC	4 cut(s)	603, 679, 810, 886
BsiSI	CCGG	1 cut(s)	866
BslI	CCNNNNNNNGG	2 cut(s)	724, 947
BsmAI	GTCTC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	5 cut(s)	31, 124, 569, 717, 935
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	4 cut(s)	603, 679, 810, 886
Bsp143I	GATC	3 cut(s)	290, 450, 693
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	5 cut(s)	28, 232, 431, 620, 887
BspANI	GGCC	5 cut(s)	31, 124, 569, 717, 935
BspCNI	CTCAG	1 cut(s)	917
BspDI	ATCGAT	1 cut(s)	289
BspHI	TCATGA	3 cut(s)	453, 642, 849
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	285, 688
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	294, 988
BssMI	GATC	3 cut(s)	290, 450, 693
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	4 cut(s)	33, 571, 778, 989
BstC8I	GCNNGC	3 cut(s)	53, 715, 719
BstDEI	CTNAG	3 cut(s)	5, 444, 904
BstDSI	CCRYGG	1 cut(s)	294
BstENI	CCTNNNNNAGG	1 cut(s)	722
BstF5I	GGATG	5 cut(s)	263, 432, 621, 685, 828
BstKTI	GATC	3 cut(s)	293, 453, 696
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	3 cut(s)	290, 450, 693
BstNI	CCWGG	4 cut(s)	33, 571, 778, 989
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	31, 569, 776, 987
BstV1I	GCAGC	2 cut(s)	37, 954
BstV2I	GAAGAC	4 cut(s)	77, 464, 653, 990
BstXI	CCANNNNNNTGG	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	289
BsuRI	GGCC	5 cut(s)	31, 124, 569, 717, 935
BsuTUI	ATCGAT	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	5 cut(s)	263, 432, 621, 685, 828
BtsIMutI	CAGTG	4 cut(s)	163, 468, 657, 864
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	53, 715, 719
CciI	TCATGA	3 cut(s)	453, 642, 849
Cfr13I	GGNCC	3 cut(s)	122, 298, 505
ClaI	ATCGAT	1 cut(s)	289
CseI	GACGC	2 cut(s)	31, 762
DdeI	CTNAG	3 cut(s)	5, 444, 904
DpnI	GATC	3 cut(s)	292, 452, 695
DpnII	GATC	3 cut(s)	290, 450, 693
EaeI	YGGCCR	2 cut(s)	29, 933
EciI	GGCGGA	2 cut(s)	446, 635
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	2 cut(s)	569, 717
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	298, 505
EcoNI	CCTNNNNNAGG	1 cut(s)	722
EcoRII	CCWGG	4 cut(s)	31, 569, 776, 987
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	26, 29, 968
FokI	GGATG	5 cut(s)	270, 439, 628, 672, 835
Fsp4HI	GCNGC	3 cut(s)	26, 29, 968
FspBI	CTAG	5 cut(s)	201, 218, 273, 633, 722
GluI	GCNGC	3 cut(s)	26, 29, 968
GsuI	CTGGAG	2 cut(s)	403, 592
HaeIII	GGCC	5 cut(s)	31, 124, 569, 717, 935
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	2 cut(s)	31, 762
HindIII	AAGCTT	2 cut(s)	333, 729
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	866
HphI	GGTGA	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	370, 693, 907
Hpy188III	TCNNGA	6 cut(s)	139, 213, 382, 454, 643, 850
HpyAV	CCTTC	2 cut(s)	248, 907
HpyF3I	CTNAG	3 cut(s)	5, 444, 904
Kzo9I	GATC	3 cut(s)	290, 450, 693
LmnI	GCTCC	4 cut(s)	598, 805, 889, 992
Lsp1109I	GCAGC	2 cut(s)	37, 954
LweI	GCATC	1 cut(s)	997
MaeI	CTAG	5 cut(s)	201, 218, 273, 633, 722
MalI	GATC	3 cut(s)	292, 452, 695
MboI	GATC	3 cut(s)	290, 450, 693
MboII	GAAGA	5 cut(s)	82, 469, 658, 964, 995
MhlI	GDGCHC	4 cut(s)	603, 679, 810, 886
MlsI	TGGCCA	1 cut(s)	935
MluCI	AATT	2 cut(s)	142, 943
MluNI	TGGCCA	1 cut(s)	935
MmeI	TCCRAC	3 cut(s)	325, 532, 721
MnlI	CCTC	7 cut(s)	54, 220, 322, 559, 631, 699, 718
Mox20I	TGGCCA	1 cut(s)	935
Mph1103I	ATGCAT	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	935
MseI	TTAA	4 cut(s)	195, 348, 537, 759
Msp20I	TGGCCA	1 cut(s)	935
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	4 cut(s)	33, 571, 778, 989
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	4 cut(s)	33, 571, 778, 989
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	3 cut(s)	290, 450, 693
NmeAIII	GCCGAG	1 cut(s)	658
NsiI	ATGCAT	1 cut(s)	87
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PagI	TCATGA	3 cut(s)	453, 642, 849
PceI	AGGCCT	2 cut(s)	569, 717
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	776
PkrI	GCNGC	3 cut(s)	27, 30, 969
PsiI	TTATAA	3 cut(s)	339, 528, 735
Psp6I	CCWGG	4 cut(s)	31, 569, 776, 987
PspGI	CCWGG	4 cut(s)	31, 569, 776, 987
PspPI	GGNCC	3 cut(s)	122, 298, 505
SaqAI	TTAA	4 cut(s)	195, 348, 537, 759
SatI	GCNGC	3 cut(s)	26, 29, 968
Sau3AI	GATC	3 cut(s)	290, 450, 693
Sau96I	GGNCC	3 cut(s)	122, 298, 505
ScrFI	CCNGG	4 cut(s)	33, 571, 778, 989
SduI	GDGCHC	4 cut(s)	603, 679, 810, 886
SfaNI	GCATC	1 cut(s)	997
SinI	GGWCC	2 cut(s)	298, 505
SpeI	ACTAGT	1 cut(s)	217
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	142, 943
SseBI	AGGCCT	2 cut(s)	569, 717
SsiI	CCGC	5 cut(s)	28, 232, 431, 620, 887
SspI	AATATT	2 cut(s)	239, 975
SspMI	CTAG	5 cut(s)	201, 218, 273, 633, 722
StuI	AGGCCT	2 cut(s)	569, 717
StyD4I	CCNGG	4 cut(s)	31, 569, 776, 987
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	3 cut(s)	94, 138, 289
TasI	AATT	2 cut(s)	142, 943
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	4 cut(s)	195, 348, 537, 759
Tru9I	TTAA	4 cut(s)	195, 348, 537, 759
TscAI	CASTG	4 cut(s)	163, 468, 657, 864
TseI	GCWGC	2 cut(s)	25, 967
TspDTI	ATGAA	8 cut(s)	371, 470, 485, 659, 674, 767, 881, 926
TspRI	CASTG	4 cut(s)	163, 468, 657, 864
VpaK11BI	GGWCC	2 cut(s)	298, 505
XagI	CCTNNNNNAGG	1 cut(s)	722
XapI	RAATTY	2 cut(s)	142, 943
XceI	RCATGY	1 cut(s)	55
XspI	CTAG	5 cut(s)	201, 218, 273, 633, 722
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.