RchiOBHm_Chr7g0219451

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003267
Physical Location & Seq
Reverse (-)
37901714 .. 37904819
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19640

Sequence Viewer

Length: 1332 bp
ATGTGGTTTCTATCAAGAAGACTCTCAAACCATCTTATCAAACCCACAAACCACGCCTTCTATTGGTGCCTCAAAAGCTACAACTCATGGGCTGCAGCCATACGCAGCTCTTCTTCCTCACATAAAGCTCTGCATATCTATTCTCAAATGCACCGGCAGTGTGTACCTTTCGACAGCTTCTCCATTCTCTTTACTCTAAAATCATGTACCCAATTGCATAACCACGCAACCATTCAACACCTCCATTCCCATATCGTTAAACTCGGGTTTGATTCTCACGTATACGTGGCCACTGCCCTTCTCCATGCTTACGTCGTCGTCTCGTTTGTGGATGCATGTAAACTGTTCGACGAAATGCCTGAGAAGAGCACGGTCACCTGGAACACAATGATTTCTGGGTATTCGAGGACCGGGAATGTAGAGAGAGCAACACTGGTGTTTGAGGAAATGCCAGTGAGAGATGTTGCATCATGGTGTGCAATGATCGCAGCCTATGTGAACAATGGCAAACATGAGCTTGGGTTATCACTGTTTCGGGATATGGTAATGGCTGAAGAAGGTGTGAAACCTGACCAAGTGACTGCAGTAGTGGTTTTATCTGGCTGTGCTCACTTGGGCTCTGTTGGGTTGTTGGTGGGGAAGTCAGTTCATGGGTTGATGGTCAAGAATCGGTGGGAGATGAATGCGGAGCTCGGTACAGTTTTGATCAGCATGTATGCGAAATGTGGGTTTTTAAAGGGAGCAGAACAGGTTTTTGAGTTGATGCAAGAGAAGAATGTGATGGCTTGGACTGCATTGATTTGTGGATCAGCACAACATGGCTACAGCAAAGAAGCATTGTGTTTGTTTGAGACAATGCATAAAGCTGGTGTAAGACCTAATGAACTGACTTTTACAGGAGTTCTTAGTGCTTGTGTGAACACGGGACTAGTTGATGAGGGTCGAAAATATTTCAACCTGATTGAAGAAAGTGGCTTGGAGCTTAGGATTCAGCATTATGGATGCATGGTCGATTTGTATGGCAAGGTGGGGCTGTTAGAGGAAGCGTATGATTTTATTAAGAACATGAAACTTGAACCCAATATTGCTGTCTGGGGAGCCTTTTTGTCGGCTTGTAAGGAGCATAAGCAGTTTGAGATGGCCGAAAGAGTAGTTGAGCAGGTCATGAAGATGGTGAAACCAGAAAATGATAGTGGGGTTTACTCTCTTATTGCCGATTTGTATGTTTTGGGTGGGAAGTGGAATGATGCTGAAAGAGTGAGGAGTCTGATGGTGAACCACAAGGTGAGGAAGGTCAGGGGCTCTAGTTTTATTCAAGTGGATGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

443

Amino Acids

49.8

Weight (kDa)

7.94

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 123 - 155 2.2e-07 PPR repeat family
PPR_1 PF12854 124 - 150 5.6e-07 PPR repeat
PPR PF01535 125 - 153 1.6e-08 PPR repeat
PPR_2 PF13041 153 - 204 2.2e-08 PPR repeat family
PPR_2 PF13041 258 - 307 6.5e-11 PPR repeat family
PPR_3 PF13812 259 - 307 2.8e-06 Pentatricopeptide repeat domain
E_motif PF20431 375 - 439 3.1e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1150
AccB1I GGYRCC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 282
AciI CCGC 1 cut(s) 686
AclWI GGATC 1 cut(s) 814
AcoI YGGCCR 2 cut(s) 288, 1140
AcuI CTGAAG 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 1285
AfaI GTAC 3 cut(s) 165, 208, 697
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 5 cut(s) 236, 955, 965, 1076, 1316
AhlI ACTAGT 1 cut(s) 928
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 8 cut(s) 78, 108, 128, 177, 517, 691, 866, 982
AluI AGCT 8 cut(s) 78, 108, 128, 177, 517, 691, 866, 982
Alw21I GWGCWC 3 cut(s) 371, 610, 693
Alw26I GTCTC 2 cut(s) 325, 845
AlwI GGATC 1 cut(s) 814
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 288, 1140
ApeKI GCWGC 4 cut(s) 92, 95, 105, 488
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 4 cut(s) 367, 1186, 1285, 1297
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 3 cut(s) 620, 693, 1304
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 3 cut(s) 371, 610, 693
BbvI GCAGC 4 cut(s) 79, 107, 117, 500
BccI CCATC 7 cut(s) 39, 652, 775, 1132, 1165, 1264, 1316
BciT130I CCWGG 1 cut(s) 379
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 325, 845
BcuI ACTAGT 1 cut(s) 928
BfaI CTAG 2 cut(s) 929, 1305
BfmI CTRYAG 3 cut(s) 93, 582, 823
BfuAI ACCTGC 1 cut(s) 1150
BisI GCNGC 4 cut(s) 93, 96, 106, 489
BlsI GCNGC 4 cut(s) 94, 97, 107, 490
Bme1390I CCNGG 2 cut(s) 379, 412
Bme18I GGWCC 1 cut(s) 408
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 68, 1099
BmrFI CCNGG 2 cut(s) 379, 412
BmsI GCATC 5 cut(s) 322, 476, 753, 992, 1237
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 983
BpuMI CCSGG 1 cut(s) 412
BsaAI YACGTR 2 cut(s) 280, 286
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 438, 452
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 1 cut(s) 379
BseGI GGATG 3 cut(s) 337, 1007, 1327
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 438, 452
BseRI GAGGAG 1 cut(s) 1276
BseXI GCAGC 4 cut(s) 79, 107, 117, 500
BshFI GGCC 2 cut(s) 290, 1142
BshNI GGYRCC 1 cut(s) 66
BsiHKAI GWGCWC 3 cut(s) 371, 610, 693
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 154, 411
BslFI GGGAC 1 cut(s) 939
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 325, 845
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 939
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 2 cut(s) 290, 1142
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 5 cut(s) 371, 610, 620, 693, 1304
Bsp143I GATC 3 cut(s) 483, 705, 806
BspACI CCGC 1 cut(s) 686
BspANI GGCC 2 cut(s) 290, 1142
BspCNI CTCAG 1 cut(s) 352
BspHI TCATGA 1 cut(s) 1164
BspLI GGNNCC 2 cut(s) 68, 1099
BspMAI CTGCAG 2 cut(s) 97, 586
BspMI ACCTGC 1 cut(s) 1150
BspPI GGATC 1 cut(s) 814
BspQI GCTCTTC 2 cut(s) 115, 359
BspT107I GGYRCC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 2 cut(s) 438, 452
BssAI RCCGGY 1 cut(s) 153
BssMI GATC 3 cut(s) 483, 705, 806
BssNAI GTATAC 1 cut(s) 283
Bst1107I GTATAC 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 4 cut(s) 345, 373, 531, 700
Bst6I CTCTTC 2 cut(s) 115, 359
BstBAI YACGTR 2 cut(s) 280, 286
BstDEI CTNAG 3 cut(s) 360, 905, 983
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 3 cut(s) 337, 1007, 1327
BstKTI GATC 3 cut(s) 486, 708, 809
BstMAI GTCTC 2 cut(s) 325, 845
BstMBI GATC 3 cut(s) 483, 705, 806
BstMWI GCNNNNNNNGC 3 cut(s) 75, 485, 791
BstNI CCWGG 1 cut(s) 379
BstNSI RCATGY 2 cut(s) 339, 715
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 377, 410
BstSFI CTRYAG 3 cut(s) 93, 582, 823
BstV1I GCAGC 4 cut(s) 79, 107, 117, 500
BstV2I GAAGAC 1 cut(s) 25
BstZ17I GTATAC 1 cut(s) 283
BsuRI GGCC 2 cut(s) 290, 1142
BtsCI GGATG 3 cut(s) 337, 1007, 1327
BtsI GCAGTG 2 cut(s) 164, 291
BtsIMutI CAGTG 5 cut(s) 164, 291, 431, 459, 527
BveI ACCTGC 1 cut(s) 1150
CciI TCATGA 1 cut(s) 1164
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 3 cut(s) 164, 207, 696
CviQI GTAC 3 cut(s) 164, 207, 696
DdeI CTNAG 3 cut(s) 360, 905, 983
DpnI GATC 3 cut(s) 485, 707, 808
DpnII GATC 3 cut(s) 483, 705, 806
DraI TTTAAA 1 cut(s) 735
DraIII CACNNNGTG 1 cut(s) 1285
EaeI YGGCCR 2 cut(s) 288, 1140
Eam1104I CTCTTC 2 cut(s) 115, 359
EarI CTCTTC 2 cut(s) 115, 359
Ecl136II GAGCTC 1 cut(s) 691
Eco24I GRGCYC 3 cut(s) 620, 693, 1304
Eco47I GGWCC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 691
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 377
EcoT22I ATGCAT 3 cut(s) 337, 861, 1007
EcoT38I GRGCYC 3 cut(s) 620, 693, 1304
Esp3I CGTCTC 1 cut(s) 325
FaqI GGGAC 1 cut(s) 939
FbaI TGATCA 1 cut(s) 705
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 93, 96, 106, 489
FokI GGATG 2 cut(s) 344, 1014
FriOI GRGCYC 3 cut(s) 620, 693, 1304
Fsp4HI GCNGC 4 cut(s) 93, 96, 106, 489
FspBI CTAG 2 cut(s) 929, 1305
GluI GCNGC 4 cut(s) 93, 96, 106, 489
HaeIII GGCC 2 cut(s) 290, 1142
HapII CCGG 2 cut(s) 154, 411
HinfI GANTC 5 cut(s) 21, 272, 667, 988, 1264
HpaII CCGG 2 cut(s) 154, 411
HphI GGTGA 4 cut(s) 367, 1186, 1285, 1297
Hpy166II GTNNAC 7 cut(s) 164, 283, 341, 499, 919, 1201, 1276
Hpy188I TCNGA 1 cut(s) 1269
Hpy188III TCNNGA 4 cut(s) 15, 536, 664, 1165
Hpy8I GTNNAC 7 cut(s) 164, 283, 341, 499, 919, 1201, 1276
Hpy99I CGWCG 3 cut(s) 317, 320, 353
HpyAV CCTTC 4 cut(s) 67, 308, 551, 1285
HpyCH4III ACNGT 4 cut(s) 345, 373, 531, 700
HpyCH4IV ACGT 3 cut(s) 279, 285, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 485, 791
HpyF3I CTNAG 3 cut(s) 360, 905, 983
HpySE526I ACGT 3 cut(s) 279, 285, 312
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 3 cut(s) 483, 705, 806
LguI GCTCTTC 2 cut(s) 115, 359
LmnI GCTCC 5 cut(s) 688, 740, 979, 1097, 1120
Lsp1109I GCAGC 4 cut(s) 79, 107, 117, 500
LweI GCATC 5 cut(s) 322, 476, 753, 992, 1237
MaeI CTAG 2 cut(s) 929, 1305
MaeII ACGT 3 cut(s) 279, 285, 312
MaeIII GTNAC 2 cut(s) 373, 577
MalI GATC 3 cut(s) 485, 707, 808
MboI GATC 3 cut(s) 483, 705, 806
MboII GAAGA 8 cut(s) 30, 102, 105, 376, 566, 784, 977, 1180
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 5 cut(s) 371, 610, 620, 693, 1304
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 15, 1273
MnlI CCTC 9 cut(s) 80, 127, 251, 399, 436, 931, 1033, 1254, 1281
Mox20I TGGCCA 1 cut(s) 290
Mph1103I ATGCAT 3 cut(s) 337, 861, 1007
MscI TGGCCA 1 cut(s) 290
MseI TTAA 3 cut(s) 258, 734, 1059
MslI CAYNNNNRTG 2 cut(s) 472, 1169
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 2 cut(s) 154, 411
MspR9I CCNGG 2 cut(s) 379, 412
MunI CAATTG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 3 cut(s) 75, 485, 791
NciI CCSGG 1 cut(s) 412
NdeII GATC 3 cut(s) 483, 705, 806
NlaIV GGNNCC 2 cut(s) 68, 1099
NmuCI GTSAC 2 cut(s) 373, 577
NsiI ATGCAT 3 cut(s) 337, 861, 1007
NspI RCATGY 2 cut(s) 339, 715
PagI TCATGA 1 cut(s) 1164
PciSI GCTCTTC 2 cut(s) 115, 359
PctI GAATGC 1 cut(s) 688
PfeI GAWTC 3 cut(s) 272, 667, 988
PkrI GCNGC 4 cut(s) 94, 97, 107, 490
PleI GAGTC 2 cut(s) 15, 1272
PpsI GAGTC 2 cut(s) 15, 1272
Ppu21I YACGTR 2 cut(s) 280, 286
Psp124BI GAGCTC 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 377
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 68, 1099
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 2 cut(s) 97, 586
RsaI GTAC 3 cut(s) 165, 208, 697
RsaNI GTAC 3 cut(s) 164, 207, 696
RseI CAYNNNNRTG 2 cut(s) 472, 1169
SacI GAGCTC 1 cut(s) 693
SapI GCTCTTC 2 cut(s) 115, 359
SaqAI TTAA 3 cut(s) 258, 734, 1059
SatI GCNGC 4 cut(s) 93, 96, 106, 489
Sau3AI GATC 3 cut(s) 483, 705, 806
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 2 cut(s) 15, 1273
ScrFI CCNGG 2 cut(s) 379, 412
SduI GDGCHC 5 cut(s) 371, 610, 620, 693, 1304
SfaNI GCATC 5 cut(s) 322, 476, 753, 992, 1237
SfcI CTRYAG 3 cut(s) 93, 582, 823
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 472, 1169
SpeI ACTAGT 1 cut(s) 928
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 686
SspI AATATT 2 cut(s) 950, 1084
SspMI CTAG 2 cut(s) 929, 1305
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 377, 410
TaaI ACNGT 4 cut(s) 345, 373, 531, 700
TaiI ACGT 3 cut(s) 282, 288, 315
TaqI TCGA 5 cut(s) 171, 348, 404, 943, 1011
TasI AATT 1 cut(s) 212
TfiI GAWTC 3 cut(s) 272, 667, 988
Tru1I TTAA 3 cut(s) 258, 734, 1059
Tru9I TTAA 3 cut(s) 258, 734, 1059
TscAI CASTG 5 cut(s) 164, 298, 438, 459, 534
TseFI GTSAC 2 cut(s) 373, 577
TseI GCWGC 4 cut(s) 92, 95, 105, 488
Tsp45I GTSAC 2 cut(s) 373, 577
TspDTI ATGAA 5 cut(s) 638, 695, 897, 1082, 1181
TspRI CASTG 5 cut(s) 164, 298, 438, 459, 534
VpaK11BI GGWCC 1 cut(s) 408
XceI RCATGY 2 cut(s) 339, 715
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 2 cut(s) 929, 1305
Zsp2I ATGCAT 3 cut(s) 337, 861, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.