FvH4_3g14400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008852
Physical Location & Seq
Reverse (-)
8897580 .. 8898334
755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14400.t1

Sequence Viewer

Length: 231 bp
ATGATGATTGTCTTCATCCTATTGCCATTGTTCTTGTCCAACACCATAGTCTCTGCTGAAGTATCCGAAATGCCGAAAACCAAAGTGAAGAGTGAGTTGCCTACCCATGAGTCCCTGGAAATTACTGAGGCAAAGCTACCCCGGGGGACTGTAATCGGACCACTCGGCCGTCGCGTTGCGCGTAGTATCGGCGTGAGACGTCCACCTTCGCCTAAAGGGCCTCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.27

Weight (kDa)

10.51

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 202
AccII CGCG 2 cut(s) 174, 181
AcoI YGGCCR 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 55, 190
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 2 cut(s) 166, 218
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 158, 218
AsuC2I CCSGG 2 cut(s) 142, 143
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 73
BcnI CCSGG 2 cut(s) 142, 143
BcoDI GTCTC 2 cut(s) 55, 190
BfuI GTATCC 1 cut(s) 73
BglI GCCNNNNNGGC 1 cut(s) 217
Bme1390I CCNGG 3 cut(s) 116, 142, 143
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 158, 218
BmrFI CCNGG 3 cut(s) 116, 142, 143
BpiI GAAGAC 1 cut(s) 4
BpuMI CCSGG 2 cut(s) 142, 143
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 4 cut(s) 114, 140, 141, 142
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 4 cut(s) 114, 140, 141, 142
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 117
BseX3I CGGCCG 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 174, 181
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 168, 220
BsiEI CGRYCG 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 142
BslFI GGGAC 2 cut(s) 97, 160
BsmAI GTCTC 2 cut(s) 55, 190
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 97, 160
BsnI GGCC 2 cut(s) 168, 220
BsoBI CYCGRG 1 cut(s) 141
BspANI GGCC 2 cut(s) 168, 220
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 2 cut(s) 174, 181
BssECI CCNNGG 4 cut(s) 114, 140, 141, 142
BssNI GRCGYC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 2 cut(s) 174, 181
BstHHI GCGC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 55, 190
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 3 cut(s) 114, 140, 141
BstUI CGCG 2 cut(s) 174, 181
BstV2I GAAGAC 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 166
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 168, 220
BtsCI GGATG 1 cut(s) 15
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 158, 218
Cfr9I CCCGGG 1 cut(s) 141
CviAII CATG 2 cut(s) 107, 224
CviJI RGCY 3 cut(s) 136, 168, 220
CviKI_1 RGCY 3 cut(s) 136, 168, 220
DdeI CTNAG 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EclXI CGGCCG 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 158
Eco52I CGGCCG 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 2 cut(s) 110, 227
FaiI YATR 3 cut(s) 47, 108, 225
FaqI GGGAC 2 cut(s) 97, 160
FatI CATG 2 cut(s) 106, 223
FokI GGATG 1 cut(s) 2
GlaI GCGC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 168, 220
HapII CCGG 1 cut(s) 142
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 2 cut(s) 110, 227
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 67, 158
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 2 cut(s) 110, 227
HspAI GCGC 1 cut(s) 179
LpnPI CCDG 3 cut(s) 101, 128, 155
MaeII ACGT 1 cut(s) 199
MboII GAAGA 2 cut(s) 4, 100
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 121, 231
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 3 cut(s) 116, 142, 143
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 2 cut(s) 174, 181
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 2 cut(s) 142, 143
NlaIII CATG 2 cut(s) 110, 227
NmeAIII GCCGAG 1 cut(s) 144
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 178
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspPI GGNCC 2 cut(s) 158, 218
Sau96I GGNCC 2 cut(s) 158, 218
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 116, 142, 143
SetI ASST 3 cut(s) 138, 202, 208
SinI GGWCC 1 cut(s) 158
SmaI CCCGGG 1 cut(s) 143
Sse9I AATT 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 114, 140, 141
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 202
TasI AATT 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 4
TspMI CCCGGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 158
XmaI CCCGGG 1 cut(s) 141
ZraI GACGTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.