Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008852

Physical Location & Seq

Genomic Coordinates Forward (+)

31249134 .. 31250042

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1214100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAAGGAGCCAAACTTTATACCTCTACTAATGAAAATGGTTCCCTTCCTTGTATTGCTATTGTTATCATCAAAATTAGTTGTTGCCGATGTTTCAGAAGATCCAATACACGAGAATGCAGCACGGAAGATGATCATCAGTAGGTCGCATCCGCAAATGGATATGATTTTGGCAGGGAAAGATCCAATAGACGTACCAATAGGTTCTAAACCACCGGGATCGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.18

Weight (kDa)

6.71

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14400 FvH4_3g14410 FvH4_3g20150
malus_domestica	MD05G1237600.v1.1 MD05G1237700.v1.1 MD10G1213200.v1.1 MD10G1214100.v1.1 MD10G1214900.v1.1 MD17G1153000.v1.1
prunus_persica	Prupe.2G064800_v2.0.a1 Prupe.4G128900_v2.0.a1 Prupe.4G129100_v2.0.a1
rosa_multiflora	Rmu_sc0004593.1_g000021
rosa_roxburghii	Rroxscaffold_1G00046260 Rroxscaffold_1G00055540
rosa_rugosa	Rorug05G0079300
rosa_samantha	Rh1AG336000 Rh1BG297400 Rh5AG169200 Rh5AG234700 Rh5BG166000 Rh5BG166600
rosa_wichuraiana	Rw0G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	3 cut(s)	95, 176, 226
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	221
AlwI	GGATC	3 cut(s)	95, 176, 226
ApeKI	GCWGC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	216
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BauI	CACGAG	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	9, 42
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	134
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	100, 132, 181, 218
BspACI	CCGC	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	9, 42
BspPI	GGATC	3 cut(s)	95, 176, 226
BssMI	GATC	4 cut(s)	100, 132, 181, 218
BssSI	CACGAG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	4 cut(s)	103, 135, 184, 221
BstMBI	GATC	4 cut(s)	100, 132, 181, 218
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	100, 181
BstYI	RGATCY	2 cut(s)	100, 181
BtsCI	GGATG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	194
CviJI	RGCY	1 cut(s)	10
CviKI_1	RGCY	1 cut(s)	10
CviQI	GTAC	1 cut(s)	194
DpnI	GATC	4 cut(s)	102, 134, 183, 220
DpnII	GATC	4 cut(s)	100, 132, 181, 218
FaiI	YATR	2 cut(s)	20, 164
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	1 cut(s)	215
HpaII	CCGG	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	100, 132, 181, 218
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	192
MalI	GATC	4 cut(s)	102, 134, 183, 220
MboI	GATC	4 cut(s)	100, 132, 181, 218
MboII	GAAGA	2 cut(s)	110, 139
MflI	RGATCY	2 cut(s)	100, 181
MluCI	AATT	1 cut(s)	74
MnlI	CCTC	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	4 cut(s)	100, 132, 181, 218
NlaIV	GGNNCC	2 cut(s)	9, 42
PctI	GAATGC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	9, 42
PsuI	RGATCY	2 cut(s)	100, 181
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	114
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	100, 132, 181, 218
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	4 cut(s)	25, 146, 195, 205
SfaNI	GCATC	1 cut(s)	157
SgeI	CNNG	5 cut(s)	62, 122, 124, 135, 186
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	195
TasI	AATT	1 cut(s)	74
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	17, 47
TspGWI	ACGGA	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.