Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004593.1

Orthogroup ID

OG0008852

Physical Location & Seq

Genomic Coordinates Reverse (-)

119837 .. 122560

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004593.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgggctctcttgaagcaatgacaaaagggagtgatcaacggtatctgggagatacagcgaagctgaagattgcacagggggtggttggtgcagttgcagacaaaggttctgttttaaagtttgtaccgtacacaatgcaagcagtgaaacaaggtttccaagatctcggcgcttcttctctgcagtctgctcatgacctcttaagatcaggggttttaaggctagaggttgaagatgatcccatttttgacctaggtaaagggtcttttgggtgggcgcctgtcttcattcttccgatgtgggagattaaggagagactaataactactgaaaaaaaatggttcatatataaggcctgtactatttacgtggtgattcccttgatcctattattattcttcttctcatccaacgtcgtttctgctggaatttcttacattccaaaaaccaaagagataaggaatcaccatgcgaatatggatattattaaaggaaggaaaataggcgttccagtaccttctacacctggagatagccatggtaacgtaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

184

Amino Acids

20.15

Weight (kDa)

9.14

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14400 FvH4_3g14410 FvH4_3g20150
malus_domestica	MD05G1237600.v1.1 MD05G1237700.v1.1 MD10G1213200.v1.1 MD10G1214100.v1.1 MD10G1214900.v1.1 MD17G1153000.v1.1
prunus_persica	Prupe.2G064800_v2.0.a1 Prupe.4G128900_v2.0.a1 Prupe.4G129100_v2.0.a1
rosa_multiflora	Rmu_sc0004593.1_g000021
rosa_roxburghii	Rroxscaffold_1G00046260 Rroxscaffold_1G00055540
rosa_rugosa	Rorug05G0079300
rosa_samantha	Rh1AG336000 Rh1BG297400 Rh5AG169200 Rh5AG234700 Rh5BG166000 Rh5BG166600
rosa_wichuraiana	Rw0G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AclWI	GGATC	2 cut(s)	233, 379
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	4 cut(s)	126, 131, 361, 516
AflII	CTTAAG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	14, 233
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	233, 379
AoxI	GGCC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	429
AspA2I	CCTAGG	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	173, 280
AsuHPI	GGTGA	2 cut(s)	385, 458
AvrII	CCTAGG	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	224, 254
BfmI	CTRYAG	1 cut(s)	182
BfoI	RGCGCY	2 cut(s)	174, 281
BfrI	CTTAAG	1 cut(s)	202
BglII	AGATCT	1 cut(s)	163
BlnI	CCTAGG	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	370
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	253, 538
Bse1I	ACTGG	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	253, 538
BseGI	GGATG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	34, 163, 206, 238, 384
Bsp19I	CCATGG	1 cut(s)	538
BspANI	GGCC	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	233, 379
BspT107I	GGYRCC	1 cut(s)	277
BspTI	CTTAAG	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	2 cut(s)	253, 538
BssMI	GATC	5 cut(s)	34, 163, 206, 238, 384
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	253, 538
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	42, 129
BstACI	GRCGYC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	1 cut(s)	407
BstH2I	RGCGCY	2 cut(s)	174, 281
BstHHI	GCGC	2 cut(s)	173, 280
BstKTI	GATC	5 cut(s)	37, 166, 209, 241, 387
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	5 cut(s)	34, 163, 206, 238, 384
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	1 cut(s)	407
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	2 cut(s)	173, 280
Csp6I	GTAC	4 cut(s)	125, 130, 360, 515
CviAII	CATG	3 cut(s)	194, 470, 539
CviJI	RGCY	5 cut(s)	6, 64, 223, 356, 537
CviKI_1	RGCY	5 cut(s)	6, 64, 223, 356, 537
CviQI	GTAC	4 cut(s)	125, 130, 360, 515
DinI	GGCGCC	1 cut(s)	279
DpnI	GATC	5 cut(s)	36, 165, 208, 240, 386
DpnII	GATC	5 cut(s)	34, 163, 206, 238, 384
DraI	TTTAAA	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	253, 538
Eco147I	AGGCCT	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	253, 538
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	253, 538
FaeI	CATG	3 cut(s)	197, 473, 542
FaiI	YATR	7 cut(s)	195, 347, 349, 351, 471, 479, 540
FatI	CATG	3 cut(s)	193, 469, 538
FbaI	TGATCA	1 cut(s)	34
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	224, 254
GlaI	GCGC	2 cut(s)	172, 279
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	2 cut(s)	174, 281
HaeIII	GGCC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	173, 280
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	197, 473, 542
Hin6I	GCGC	2 cut(s)	171, 278
HinP1I	GCGC	2 cut(s)	171, 278
HinfI	GANTC	2 cut(s)	376, 463
HphI	GGTGA	2 cut(s)	385, 458
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	2 cut(s)	11, 194
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	489, 528
HpyCH4III	ACNGT	2 cut(s)	42, 129
HpyCH4IV	ACGT	3 cut(s)	369, 414, 546
HpyCH4V	TGCA	5 cut(s)	74, 92, 98, 139, 184
HpySE526I	ACGT	3 cut(s)	369, 414, 546
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	197, 473, 542
HspAI	GCGC	2 cut(s)	171, 278
KasI	GGCGCC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	34, 163, 206, 238, 384
LpnPI	CCDG	9 cut(s)	32, 62, 195, 294, 370, 411, 513, 525, 540
MaeI	CTAG	2 cut(s)	224, 254
MaeII	ACGT	3 cut(s)	369, 414, 546
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	5 cut(s)	36, 165, 208, 240, 386
MboI	GATC	5 cut(s)	34, 163, 206, 238, 384
MboII	GAAGA	7 cut(s)	79, 168, 245, 277, 284, 391, 394
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	429
Mly113I	GGCGCC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	2 cut(s)	209, 220
MseI	TTAA	5 cut(s)	116, 203, 218, 309, 489
MspCI	CTTAAG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
NarI	GGCGCC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	538
NdeII	GATC	5 cut(s)	34, 163, 206, 238, 384
NlaIII	CATG	3 cut(s)	197, 473, 542
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	147
PagI	TCATGA	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	376, 463
PluTI	GGCGCC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	4 cut(s)	126, 131, 361, 516
RsaNI	GTAC	4 cut(s)	125, 130, 360, 515
SaqAI	TTAA	5 cut(s)	116, 203, 218, 309, 489
Sau3AI	GATC	5 cut(s)	34, 163, 206, 238, 384
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	182
SfoI	GGCGCC	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	1 cut(s)	429
SseBI	AGGCCT	1 cut(s)	356
SspDI	GGCGCC	1 cut(s)	277
SspMI	CTAG	2 cut(s)	224, 254
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	253, 538
TaaI	ACNGT	2 cut(s)	42, 129
TaiI	ACGT	3 cut(s)	372, 417, 549
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	376, 463
Tru1I	TTAA	5 cut(s)	116, 203, 218, 309, 489
Tru9I	TTAA	5 cut(s)	116, 203, 218, 309, 489
TscAI	CASTG	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	277, 334
TspRI	CASTG	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	202
XapI	RAATTY	1 cut(s)	429
XmaJI	CCTAGG	1 cut(s)	253
XspI	CTAG	2 cut(s)	224, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.