Rh5AG234700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
28426828 .. 28427598
771 bp
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UTR
Exon/CDS
Intron
Rh5AG234700.1

Sequence Viewer

Length: 201 bp
ATGGTTCAGAAAGCCTGCCTTGCTTTCATGACCTTCATCTTATTGCTATCGTTCTCGTCCAACATAGTCCAGGCTGAAGTTTCTGAAATGCCAACAACCAAAGAGAAGCAGGCTAGGCTGCATGCGATGATGGAGATTGTTAGGGTGAAGAGGATAAGCGTACCAGTACCTCCTACACCTGGAGATGGTGCTGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.22

Weight (kDa)

9.1

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 2 cut(s) 162, 168
AfiI CCNNNNNNNGG 2 cut(s) 179, 185
AjnI CCWGG 2 cut(s) 69, 178
ApeKI GCWGC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 157
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 124, 179
BciT130I CCWGG 2 cut(s) 71, 180
BfaI CTAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 2 cut(s) 71, 180
BmrFI CCNGG 2 cut(s) 71, 180
BpmI CTGGAG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 185
Bse1I ACTGG 1 cut(s) 164
BseBI CCWGG 2 cut(s) 71, 180
BseLI CCNNNNNNNGG 2 cut(s) 179, 185
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 179, 185
BspHI TCATGA 1 cut(s) 27
BsrI ACTGG 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 71, 180
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 16, 111, 123
BstMWI GCNNNNNNNGC 2 cut(s) 20, 115
BstNI CCWGG 2 cut(s) 71, 180
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 69, 178
BstV1I GCAGC 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 16, 111, 123
CciI TCATGA 1 cut(s) 27
Csp6I GTAC 2 cut(s) 161, 167
CviAII CATG 2 cut(s) 28, 122
CviJI RGCY 4 cut(s) 14, 74, 113, 118
CviKI_1 RGCY 4 cut(s) 14, 74, 113, 118
CviQI GTAC 2 cut(s) 161, 167
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 69, 178
FaeI CATG 2 cut(s) 31, 125
FaiI YATR 3 cut(s) 29, 65, 123
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 2 cut(s) 27, 121
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 201
Hin1II CATG 2 cut(s) 31, 125
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 9, 85
Hpy188III TCNNGA 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 115
Hsp92II CATG 2 cut(s) 31, 125
LpnPI CCDG 8 cut(s) 28, 56, 83, 95, 165, 177, 177, 192
Lsp1109I GCAGC 1 cut(s) 105
MaeI CTAG 1 cut(s) 114
MboII GAAGA 1 cut(s) 160
MluCI AATT 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 144, 180
MspR9I CCNGG 2 cut(s) 71, 180
MvaI CCWGG 2 cut(s) 71, 180
MwoI GCNNNNNNNGC 2 cut(s) 20, 115
NlaIII CATG 2 cut(s) 31, 125
NspI RCATGY 1 cut(s) 125
PaeI GCATGC 1 cut(s) 125
PagI TCATGA 1 cut(s) 27
PkrI GCNGC 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 69, 178
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 69, 178
RsaI GTAC 2 cut(s) 162, 168
RsaNI GTAC 2 cut(s) 161, 167
SatI GCNGC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 71, 180
SetI ASST 3 cut(s) 35, 172, 181
SphI GCATGC 1 cut(s) 125
Sse9I AATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 69, 178
TasI AATT 1 cut(s) 196
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 16, 25
XceI RCATGY 1 cut(s) 125
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.