Rroxscaffold_1G00055540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
77027295 .. 77027670
376 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00055540.1

Sequence Viewer

Length: 213 bp
ATGGTTCACCACAAAGGCTTCACTGTTTACATGATTCCTTTCATACTTTTGCTAGTTTTGTCATCAGCAGAGATAGCTGTTGCCAGAGAAGTGAAGAGTACTGGAAATGATATGGAGTACAACAAGATTAATAAAGCAAGGAACACAAATATAAGGAAACTGTTAAACAGTGAAGTACAAAAGCCACCTGCTATTCCAGCGCCTCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.8

Weight (kDa)

9.77

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AfaI GTAC 3 cut(s) 100, 119, 177
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 202
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 25, 162, 170
Bst6I CTCTTC 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 74, 197
BtsIMutI CAGTG 2 cut(s) 21, 175
BveI ACCTGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 202
Csp6I GTAC 3 cut(s) 99, 118, 176
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 18, 77, 184
CviKI_1 RGCY 3 cut(s) 18, 77, 184
CviQI GTAC 3 cut(s) 99, 118, 176
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
FaeI CATG 1 cut(s) 34
FaiI YATR 4 cut(s) 32, 44, 113, 152
FatI CATG 1 cut(s) 30
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 203
HhaI GCGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 7, 28
Hpy8I GTNNAC 2 cut(s) 7, 28
HpyCH4III ACNGT 3 cut(s) 25, 162, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 197
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 200
LpnPI CCDG 3 cut(s) 87, 97, 201
MaeI CTAG 1 cut(s) 53
MboII GAAGA 1 cut(s) 106
MnlI CCTC 1 cut(s) 213
MseI TTAA 2 cut(s) 129, 164
MwoI GCNNNNNNNGC 2 cut(s) 74, 197
NlaIII CATG 1 cut(s) 34
PaqCI CACCTGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 129
RsaI GTAC 3 cut(s) 100, 119, 177
RsaNI GTAC 3 cut(s) 99, 118, 176
SaqAI TTAA 2 cut(s) 129, 164
ScaI AGTACT 1 cut(s) 100
SetI ASST 3 cut(s) 79, 190, 211
SgeI CNNG 8 cut(s) 43, 65, 96, 114, 136, 150, 200, 209
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SspMI CTAG 1 cut(s) 53
TaaI ACNGT 3 cut(s) 25, 162, 170
TatI WGTACW 3 cut(s) 98, 117, 175
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 129, 164
Tru9I TTAA 2 cut(s) 129, 164
TscAI CASTG 2 cut(s) 28, 175
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 2 cut(s) 28, 175
VspI ATTAAT 1 cut(s) 129
XspI CTAG 1 cut(s) 53
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.