Prupe.4G128900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
7117596 .. 7118620
1025 bp
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UTR
Exon/CDS
Intron
Prupe.4G128900.1

Sequence Viewer

Length: 201 bp
ATGGTTCCCAAGGGTAGCTACCTGATGAGTCTCTTCATCCTAATGTTGTTGTTCTCATCCAAAGCAGCGTTTGCCAGAGTTTCCCACTTTTCAGAAACCAAACAGAAAAAAGGTAGAGAGCTTCTGAAAATGAATAATATTCACCTGGCAAAGAAAATAGGAGCCGATGACCCAATTGGCTCCGGTCCATCGATTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.25

Weight (kDa)

10.09

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 18, 121
AluI AGCT 2 cut(s) 18, 121
Alw26I GTCTC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 35
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 6, 163, 181
BmrFI CCNGG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 182
BseBI CCWGG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 36, 56
BseXI GCAGC 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 191
BsiSI CCGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 35
BspDI ATCGAT 1 cut(s) 191
BspLI GGNNCC 3 cut(s) 6, 163, 181
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 71
BstF5I GGATG 2 cut(s) 36, 56
BstMAI GTCTC 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 191
BsuTUI ATCGAT 1 cut(s) 191
BtsCI GGATG 2 cut(s) 36, 56
Cfr13I GGNCC 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 191
CviJI RGCY 4 cut(s) 18, 121, 164, 180
CviKI_1 RGCY 4 cut(s) 18, 121, 164, 180
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 2 cut(s) 23, 43
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HapII CCGG 1 cut(s) 183
HinfI GANTC 2 cut(s) 28, 193
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 94, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 161, 185
LpnPI CCDG 5 cut(s) 35, 88, 131, 158, 196
Lsp1109I GCAGC 1 cut(s) 77
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 174
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 37
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIV GGNNCC 3 cut(s) 6, 163, 181
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 3 cut(s) 6, 163, 181
PspPI GGNCC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 146
SetI ASST 5 cut(s) 20, 24, 115, 123, 147
SgeI CNNG 6 cut(s) 22, 34, 87, 157, 158, 195
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 1 cut(s) 174
SspI AATATT 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 1 cut(s) 191
TasI AATT 1 cut(s) 174
TfiI GAWTC 1 cut(s) 193
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 25, 146
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.