MD10G1214900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
31325389 .. 31326154
766 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1214900.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGTTGACAAAGCCAGCGTTGTTTACGTGATTCCCATCCTTTTATTGCTATTGTTCTCATCCAAAATAGTCTTTGCCAATGTTTCTGAACATCCAAAGCACAATGATGTAGAGAAGATGTTCAGTAGGTTGCGTATGCAAATGAAGATTATTCATGCAAAGAAAGTAGGCGTACCAGTTCCGGGTAGGTCGCCTGGAGTTCCCAAAAAAGCTAAACACAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.42

Weight (kDa)

10.41

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 182
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 183
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 183, 195
BmrFI CCNGG 2 cut(s) 183, 195
BpmI CTGGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 195
BseGI GGATG 3 cut(s) 36, 59, 91
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 182
BsrI ACTGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 16
BstF5I GGATG 3 cut(s) 36, 59, 91
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 181, 193
BtsCI GGATG 3 cut(s) 36, 59, 91
Cac8I GCNNGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 155
CviJI RGCY 2 cut(s) 14, 212
CviKI_1 RGCY 2 cut(s) 14, 212
CviQI GTAC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 137, 156
FatI CATG 1 cut(s) 154
FokI GGATG 3 cut(s) 23, 46, 78
GsuI CTGGAG 1 cut(s) 216
HapII CCGG 1 cut(s) 182
Hin1II CATG 1 cut(s) 158
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 7, 25
Hpy188I TCNGA 1 cut(s) 88
Hpy8I GTNNAC 2 cut(s) 7, 25
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 139, 158
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 158
LpnPI CCDG 5 cut(s) 28, 180, 189, 195, 207
MaeII ACGT 1 cut(s) 27
MboII GAAGA 2 cut(s) 127, 157
MroXI GAANNNNTTC 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 183, 195
MvaI CCWGG 1 cut(s) 195
NciI CCSGG 1 cut(s) 183
NlaIII CATG 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 183, 195
SetI ASST 4 cut(s) 30, 131, 191, 214
SgeI CNNG 8 cut(s) 27, 40, 167, 188, 194, 195, 206, 207
SmiMI CAYNNNNRTG 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 181, 193
TaiI ACGT 1 cut(s) 30
TfiI GAWTC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 143, 158
XmnI GAANNNNTTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.