Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008852

Physical Location & Seq

Genomic Coordinates Forward (+)

36899184 .. 36900018

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1237700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGTTCGCAAGGCCTGCAGCGTTTACATGATCCCCTTCTTTCTATTGCTATTGTTTTCATCAGAATTAGTCTTTGCCAATGTTTCTGAAGATCCAATACACAGGAAGATGATGATTAGTAGGTCGCAGCATCTGCAAATGCAAATGGAGACCATTTTGGCAAAGAAAGGGGCGCAAATAGGCGTACCAATAGTATCTAACCCACCTGGAATAGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.17

Weight (kDa)

9.74

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14400 FvH4_3g14410 FvH4_3g20150
malus_domestica	MD05G1237600.v1.1 MD05G1237700.v1.1 MD10G1213200.v1.1 MD10G1214100.v1.1 MD10G1214900.v1.1 MD17G1153000.v1.1
prunus_persica	Prupe.2G064800_v2.0.a1 Prupe.4G128900_v2.0.a1 Prupe.4G129100_v2.0.a1
rosa_multiflora	Rmu_sc0004593.1_g000021
rosa_roxburghii	Rroxscaffold_1G00046260 Rroxscaffold_1G00055540
rosa_rugosa	Rorug05G0079300
rosa_samantha	Rh1AG336000 Rh1BG297400 Rh5AG169200 Rh5AG234700 Rh5BG166000 Rh5BG166600
rosa_wichuraiana	Rw0G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	25, 86
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	25, 86
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	18, 127
AspLEI	GCGC	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	81, 113
BbvI	GCAGC	2 cut(s)	30, 139
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	2 cut(s)	19, 128
BlsI	GCNGC	2 cut(s)	20, 129
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	30, 139
BshFI	GGCC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	30, 91
BspANI	GGCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	20
BspPI	GGATC	2 cut(s)	25, 86
BspTNI	GGTCTC	1 cut(s)	143
BssMI	GATC	2 cut(s)	30, 91
Bst2UI	CCWGG	1 cut(s)	207
BstAPI	GCANNNNNTGC	2 cut(s)	15, 133
BstC8I	GCNNGC	1 cut(s)	16
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	33, 94
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	30, 91
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 133
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	30, 139
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	1 cut(s)	14
CviKI_1	RGCY	1 cut(s)	14
CviQI	GTAC	1 cut(s)	185
DpnI	GATC	2 cut(s)	32, 93
DpnII	GATC	2 cut(s)	30, 91
Eco147I	AGGCCT	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	31
FaiI	YATR	1 cut(s)	29
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	19, 128
Fsp4HI	GCNGC	2 cut(s)	19, 128
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	19, 128
HaeIII	GGCC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	64, 88
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	18, 136, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 133
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	30, 91
LpnPI	CCDG	3 cut(s)	28, 88, 192
Lsp1109I	GCAGC	2 cut(s)	30, 139
LweI	GCATC	1 cut(s)	139
MalI	GATC	2 cut(s)	32, 93
MboI	GATC	2 cut(s)	30, 91
MboII	GAAGA	2 cut(s)	101, 118
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	15, 133
NdeII	GATC	2 cut(s)	30, 91
NlaIII	CATG	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	20, 129
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SatI	GCNGC	2 cut(s)	19, 128
Sau3AI	GATC	2 cut(s)	30, 91
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	2 cut(s)	125, 208
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	16
SgeI	CNNG	5 cut(s)	22, 27, 40, 115, 218
Sse9I	AATT	1 cut(s)	65
SseBI	AGGCCT	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	205
TasI	AATT	1 cut(s)	65
TseI	GCWGC	2 cut(s)	18, 127
TspDTI	ATGAA	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.