Rroxscaffold_1G00046260

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
65413155 .. 65413922
768 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00046260.1

Sequence Viewer

Length: 204 bp
ATGGTTCAGAAAGCCCTCCTTGCTTGCATGACTCCCTTCATCTTATTGCTATTGTTCTCGTCCAACATAGTCCAGGCTGAAGTTTCTGAAATGCCGACAACCAAAGAGAAGCAGGCTAGGCTGCATGTGAACATGGAGATTGTTAGGGTGAAGAGGATAGGCGTACCAGTACCTCCTACACCAACAGATGGTCAGGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.42

Weight (kDa)

9.1

Isoelectric Point (pI)

65.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 165, 171
AfiI CCNNNNNNNGG 1 cut(s) 188
AjnI CCWGG 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 160
BbvI GCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 25, 114
BstMWI GCNNNNNNNGC 2 cut(s) 20, 118
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 25, 114
Csp6I GTAC 2 cut(s) 164, 170
CviAII CATG 3 cut(s) 28, 125, 133
CviJI RGCY 4 cut(s) 14, 77, 116, 121
CviKI_1 RGCY 4 cut(s) 14, 77, 116, 121
CviQI GTAC 2 cut(s) 164, 170
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 3 cut(s) 31, 128, 136
FaiI YATR 4 cut(s) 29, 68, 126, 134
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 3 cut(s) 27, 124, 132
Fnu4HI GCNGC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 122
Hin1II CATG 3 cut(s) 31, 128, 136
HinfI GANTC 1 cut(s) 31
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 9, 88
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 27, 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 118
Hsp92II CATG 3 cut(s) 31, 128, 136
LpnPI CCDG 5 cut(s) 59, 86, 98, 179, 180
Lsp1109I GCAGC 1 cut(s) 108
MaeI CTAG 1 cut(s) 117
MboII GAAGA 1 cut(s) 163
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 3 cut(s) 26, 147, 183
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 20, 118
NlaIII CATG 3 cut(s) 31, 128, 136
NspI RCATGY 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
RsaI GTAC 2 cut(s) 165, 171
RsaNI GTAC 2 cut(s) 164, 170
SatI GCNGC 1 cut(s) 122
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 74
SetI ASST 1 cut(s) 175
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 72
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 188
XceI RCATGY 1 cut(s) 128
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.