Rh5BG166000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
17480639 .. 17481214
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG166000.1

Sequence Viewer

Length: 213 bp
ATGGTTCACCACAAAGGCTGCGCTGTTTACATGATTCCCTTCATACTTTTGCTAGTTTTGTCATCAGCAGAGATAGCTTTTGCCAGAGAAGTGAAGAGCACTAGAAATGATATGGAGTACAGGAAGATAAATAAAGCAAGGAACACAAACATAAGGAAACTGTTAAACAGTGAAGTACAAAAGCCACCTGCTATTCCAGCGCCTCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.92

Weight (kDa)

10.01

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AfaI GTAC 2 cut(s) 119, 177
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 18
AspLEI GCGC 2 cut(s) 23, 202
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 5
BfaI CTAG 2 cut(s) 53, 102
BfoI RGCGCY 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 101
BspMI ACCTGC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 162, 170
Bst6I CTCTTC 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 2 cut(s) 23, 202
BstMWI GCNNNNNNNGC 2 cut(s) 74, 197
BstV1I GCAGC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 196
CfoI GCGC 2 cut(s) 23, 202
Csp6I GTAC 2 cut(s) 118, 176
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 18, 77, 184
CviKI_1 RGCY 3 cut(s) 18, 77, 184
CviQI GTAC 2 cut(s) 118, 176
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
FaeI CATG 1 cut(s) 34
FaiI YATR 4 cut(s) 32, 44, 113, 152
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 2 cut(s) 53, 102
GlaI GCGC 2 cut(s) 22, 201
GluI GCNGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 203
HhaI GCGC 2 cut(s) 23, 202
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 2 cut(s) 21, 200
HinP1I GCGC 2 cut(s) 21, 200
HinfI GANTC 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 7, 28
Hpy8I GTNNAC 2 cut(s) 7, 28
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 162, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 197
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 2 cut(s) 21, 200
LguI GCTCTTC 1 cut(s) 89
LpnPI CCDG 3 cut(s) 97, 106, 201
Lsp1109I GCAGC 1 cut(s) 5
MaeI CTAG 2 cut(s) 53, 102
MboII GAAGA 2 cut(s) 106, 136
MhlI GDGCHC 1 cut(s) 101
MnlI CCTC 1 cut(s) 213
MseI TTAA 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 74, 197
NlaIII CATG 1 cut(s) 34
PaqCI CACCTGC 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 20
RsaI GTAC 2 cut(s) 119, 177
RsaNI GTAC 2 cut(s) 118, 176
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 19
SduI GDGCHC 1 cut(s) 101
SetI ASST 3 cut(s) 79, 190, 211
SgeI CNNG 8 cut(s) 43, 65, 96, 114, 133, 150, 200, 209
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SspMI CTAG 2 cut(s) 53, 102
TaaI ACNGT 2 cut(s) 162, 170
TatI WGTACW 2 cut(s) 117, 175
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 1 cut(s) 175
XspI CTAG 2 cut(s) 53, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.