Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008852

Physical Location & Seq

Genomic Coordinates Reverse (-)

31180005 .. 31181048

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1213200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTTCACAAGGCCAACTTTGTTTACATGATTTCCATCATCCTATTGCTATTGTTCTCATCCAAATTAGTCTTTGCCAATGTTTCTGAAAAACCAAAGCACAATGTAGCAGAAAAGATCATCAGTAGGTCGCATCTGCATGTTGTGGCAAAGGAAGAGGAACCGGTGCACTATAAGACCGTACCTTTTCCGGGGCATGGAAAAAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

71

Amino Acids

7.99

Weight (kDa)

9.85

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008852)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14400 FvH4_3g14410 FvH4_3g20150
malus_domestica	MD05G1237600.v1.1 MD05G1237700.v1.1 MD10G1213200.v1.1 MD10G1214100.v1.1 MD10G1214900.v1.1 MD17G1153000.v1.1
prunus_persica	Prupe.2G064800_v2.0.a1 Prupe.4G128900_v2.0.a1 Prupe.4G129100_v2.0.a1
rosa_multiflora	Rmu_sc0004593.1_g000021
rosa_roxburghii	Rroxscaffold_1G00046260 Rroxscaffold_1G00055540
rosa_rugosa	Rorug05G0079300
rosa_samantha	Rh1AG336000 Rh1BG297400 Rh5AG169200 Rh5AG234700 Rh5BG166000 Rh5BG166600
rosa_wichuraiana	Rw0G001590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	191, 197
AgeI	ACCGGT	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	171
Alw44I	GTGCAC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	167
AsiGI	ACCGGT	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 197
Bse118I	RCCGGY	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	39, 59
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	191, 197
BseSI	GKGCMC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	164, 191
BslI	CCNNNNNNNGG	2 cut(s)	191, 197
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	39, 59
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	39, 59
Cfr10I	RCCGGY	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	182
CspAI	ACCGGT	1 cut(s)	163
CviAII	CATG	3 cut(s)	28, 140, 197
CviJI	RGCY	1 cut(s)	14
CviKI_1	RGCY	1 cut(s)	14
CviQI	GTAC	1 cut(s)	182
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	31, 143, 200
FaiI	YATR	4 cut(s)	29, 141, 174, 198
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	3 cut(s)	27, 139, 196
FokI	GGATG	2 cut(s)	26, 46
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	2 cut(s)	164, 191
Hin1II	CATG	3 cut(s)	31, 143, 200
HpaII	CCGG	2 cut(s)	164, 191
Hpy166II	GTNNAC	3 cut(s)	7, 25, 169
Hpy188I	TCNGA	1 cut(s)	88
Hpy8I	GTNNAC	3 cut(s)	7, 25, 169
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	139, 169
Hsp92II	CATG	3 cut(s)	31, 143, 200
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	2 cut(s)	177, 204
LweI	GCATC	1 cut(s)	142
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	1 cut(s)	151
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	2 cut(s)	164, 191
MspR9I	CCNGG	1 cut(s)	192
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	31, 143, 200
NlaIV	GGNNCC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	162
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	2 cut(s)	131, 187
SfaNI	GCATC	1 cut(s)	142
SgeI	CNNG	7 cut(s)	22, 40, 152, 176, 203, 204, 209
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	181
TasI	AATT	1 cut(s)	65
VneI	GTGCAC	1 cut(s)	167
XceI	RCATGY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.