MD17G1153000.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
14288391 .. 14291143
2753 bp
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UTR
Exon/CDS
Intron
MD17G1153000.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGTTCACAAGGCTAGCGTTGTTTACATGATTCCCATAATTATATTGCTATTGTTCGCATCCAAAGTAGTCTTTGCCAATTTTTCTGAAAATCCAAAACACTATGATGTAGAGAAGATGATCAGTAGGTCGCGTCTGCTAATGGAGATTATTCCGACAATGAAAGTAGCTGTACCAAAAGGAACTATGCTGTCTGGAAGCGGGAATGTTACACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.03

Weight (kDa)

9.78

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 133
AciI CCGC 1 cut(s) 201
AfaI GTAC 1 cut(s) 174
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AsuNHI GCTAGC 1 cut(s) 14
BclI TGATCA 1 cut(s) 120
BfaI CTAG 1 cut(s) 15
BmsI GCATC 1 cut(s) 68
BmtI GCTAGC 1 cut(s) 18
BseGI GGATG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 133
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 201
BspFNI CGCG 1 cut(s) 133
BspOI GCTAGC 1 cut(s) 18
BssMI GATC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstUI CGCG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 16
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 28
CviJI RGCY 2 cut(s) 14, 170
CviKI_1 RGCY 2 cut(s) 14, 170
CviQI GTAC 1 cut(s) 173
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 38, 44, 105, 188
FatI CATG 1 cut(s) 27
FauI CCCGC 1 cut(s) 194
FbaI TGATCA 1 cut(s) 120
FokI GGATG 1 cut(s) 46
FspBI CTAG 1 cut(s) 15
HgaI GACGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 31
HinfI GANTC 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 7, 25
Hpy188I TCNGA 2 cut(s) 88, 156
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 2 cut(s) 7, 25
Hsp92II CATG 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 1 cut(s) 180
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 127
MluCI AATT 2 cut(s) 39, 79
MmeI TCCRAC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 105
MvnI CGCG 1 cut(s) 133
NdeII GATC 1 cut(s) 120
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 31
PfeI GAWTC 1 cut(s) 31
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 105
Sau3AI GATC 1 cut(s) 120
SetI ASST 2 cut(s) 131, 172
SfaNI GCATC 1 cut(s) 68
SgeI CNNG 6 cut(s) 22, 27, 40, 144, 207, 214
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 39, 79
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 15
TasI AATT 2 cut(s) 39, 79
TfiI GAWTC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 176
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.