Rh5BG166600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008852
Physical Location & Seq
Reverse (-)
17535123 .. 17535929
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG166600.1

Sequence Viewer

Length: 339 bp
ATGGCATTCAGACTCAGCTTTATGTTGTGTTCTTACTTCCCAGGCATTATAAATAAGCTGCAGATGTGGGAGATTAAAGAGAAACTAATAACTACTGAAAAAAAAATGGTTCACAAGGCCTGTACTATTTACGCGGTGATTCCCTTGATCCTTTTGTTATTCTTCTTCTCATCCAACGTTGTTTCTGCCGGAGTTTCCTACATTCCAAAAACCAAAGAGAGAAGGAATCACCATGTGAATATGGATATTATTAAAGGAAGGAAAATAGGCGTACCAGTACCTTCTACACCTGGAGATAGCCATGGTAATTGTGAACTAGCTTTGGTTCAAGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.74

Weight (kDa)

9.41

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 134
AclI AACGTT 1 cut(s) 177
AclWI GGATC 1 cut(s) 142
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 3 cut(s) 124, 273, 279
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 2 cut(s) 40, 289
AluBI AGCT 3 cut(s) 18, 58, 320
AluI AGCT 3 cut(s) 18, 58, 320
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 148, 221
BbvI GCAGC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 42, 291
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 42, 291
BmrFI CCNGG 2 cut(s) 42, 291
BpmI CTGGAG 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 40, 301
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 42, 291
BseDI CCNNGG 2 cut(s) 40, 301
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 189
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 27
BspFNI CGCG 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 40, 301
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 2 cut(s) 42, 291
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstNI CCWGG 2 cut(s) 42, 291
BstSCI CCNGG 2 cut(s) 40, 289
BstSFI CTRYAG 1 cut(s) 59
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 170
Csp6I GTAC 3 cut(s) 123, 272, 278
CviAII CATG 2 cut(s) 233, 302
CviJI RGCY 5 cut(s) 18, 58, 119, 300, 320
CviKI_1 RGCY 5 cut(s) 18, 58, 119, 300, 320
CviQI GTAC 3 cut(s) 123, 272, 278
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraIII CACNNNGTG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 301
Eco147I AGGCCT 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 40, 289
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 236, 305
FaiI YATR 5 cut(s) 23, 50, 234, 242, 303
FatI CATG 2 cut(s) 232, 301
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 317
GluI GCNGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 189
Hin1II CATG 2 cut(s) 236, 305
HinfI GANTC 3 cut(s) 12, 139, 226
HpaII CCGG 1 cut(s) 189
HphI GGTGA 2 cut(s) 148, 221
Hpy166II GTNNAC 2 cut(s) 112, 314
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 2 cut(s) 112, 314
HpyAV CCTTC 3 cut(s) 216, 252, 291
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 236, 305
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 7 cut(s) 27, 54, 133, 202, 276, 288, 303
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 177
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 154, 157
MluCI AATT 1 cut(s) 307
MlyI GAGTC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 198
MseI TTAA 2 cut(s) 75, 252
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 42, 291
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 2 cut(s) 42, 291
MvnI CGCG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 301
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 236, 305
PceI AGGCCT 1 cut(s) 119
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 2 cut(s) 139, 226
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PsiI TTATAA 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 40, 289
PspGI CCWGG 2 cut(s) 40, 289
PstI CTGCAG 1 cut(s) 63
RsaI GTAC 3 cut(s) 124, 273, 279
RsaNI GTAC 3 cut(s) 123, 272, 278
SaqAI TTAA 2 cut(s) 75, 252
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 42, 291
SetI ASST 6 cut(s) 20, 60, 180, 283, 292, 322
SfcI CTRYAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 307
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 335
SspMI CTAG 1 cut(s) 317
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 40, 289
StyI CCWWGG 1 cut(s) 301
TaiI ACGT 1 cut(s) 180
TasI AATT 1 cut(s) 307
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 2 cut(s) 139, 226
Tru1I TTAA 2 cut(s) 75, 252
Tru9I TTAA 2 cut(s) 75, 252
TseI GCWGC 1 cut(s) 58
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.