Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003682

Physical Location & Seq

Genomic Coordinates Forward (+)

13487502 .. 13488680

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20454.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCAATTTGTCAAAGAGGATTTTCACATGGTCAGCACTCCATCATGGTGTAATCTACTCCTCAAGTGTGTTATTCTTCCTGCTATAGTTGAGTATCAGCTAGTCGAGGCTACTAGACAAGTTTTTATGAGTTTTGTTGAGTTGCAGAAATTGGGTACTATGTTTCTCAAAGATATTACTGGTGGTAGCCATTATCTATTTGAAGAAGTTTTTACTGATGACAAGCAGTACCCCAGTGCTGAGGTTCACTATTTCACATTCTTTCAAGATGATGCTACAGAACTTGCATTCCTTATAAAGATCATCAATTTTAGTTCTGAATTTGAGACTGTTGTACGGGAACTGAAGTCTCTTTCAGTATCTGCAAACGTCGAGGTTGATTTTGCCTCTAGGGAGAAGACAGAAATTCTGGACAGCGCTAGGAATTTGTTTCTACAGTGTGATTTTGCTATTTCTCAAGAGATCACGAGGAAAAGTATGCATGATGGGGCTTCCAGCAAAATTCTATTAGATGTTTACTGGTTCTTTTTGCTGAAGCAGTGTGTGGGAGTAGAATGCTTGTGGCTGACAAATGATGTTGGTCTCTTGCTCTTGGCATTCTTGTACAAATCTGTTCTCACTACAACAAGTACGAGGACCTTGAGGTTTCATGTTTCTGCATTTTCTGTCATTGTTGGTGATTATACCAGCAAACGAGCGACCATAGCAACACTTTGGGTTGCGAAATCTTGCTATGCAGAGCTTGTGAAGGGGTTTTCCATACCACCAGCATTATATCACAAACATCACAGAGGATGTGCTCTTTCTTCCACTCAACAGATTGCTCAACTGACTCCGATTTCCAGGCAGACTCTTCCCTTTGTTTTGGAAACACTGATGGTTGAAGCCTATGTGATGATTCTGGAGAGGAGACCGGTTTATGCTGTCTTCTCTGGGCGAATTTCTTGTTCCTTACATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

321

Amino Acids

36.46

Weight (kDa)

6.15

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12421 FvH4_3g20453 FvH4_3g20454
malus_domestica	MD16G1253500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479611 RchiOBHm_Chr4g0393431 RchiOBHm_Chr4g0403131 RchiOBHm_Chr4g0403161 RchiOBHm_Chr4g0419441 RchiOBHm_Chr5g0007271 RchiOBHm_Chr5g0056401
rosa_multiflora	Rmu_sc0000577.1_g000014 Rmu_sc0001218.1_g000016 Rmu_sc0001787.1_g000002 Rmu_sc0001877.1_g000005 Rmu_sc0002396.1_g000007 Rmu_sc0002522.1_g000025 Rmu_sc0002699.1_g000023 Rmu_sc0002822.1_g000015 Rmu_sc0002822.1_g000017 Rmu_sc0003347.1_g000019 Rmu_sc0004174.1_g000005 Rmu_sc0004874.1_g000013 Rmu_sc0009422.1_g000002 Rmu_sc0017595.1_g000001 Rmu_sc0032285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033040 Rroxscaffold_2G00106480 Rroxscaffold_3G00267930 Rroxscaffold_4G00326640 Rroxscaffold_5G00382820 Rroxscaffold_6G00403290 Rroxscaffold_7G00191420
rosa_samantha	Rh2AG247000 Rh6CG057200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AcsI	RAATTY	5 cut(s)	320, 405, 424, 501, 939
AcuI	CTGAAG	2 cut(s)	365, 554
AfaI	GTAC	5 cut(s)	157, 230, 336, 605, 631
AfeI	AGCGCT	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	955
AgeI	ACCGGT	1 cut(s)	913
AgsI	TTSAA	3 cut(s)	203, 266, 884
AjnI	CCWGG	1 cut(s)	842
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	2 cut(s)	100, 742
AluI	AGCT	2 cut(s)	100, 742
Alw21I	GWGCWC	1 cut(s)	802
Alw26I	GTCTC	4 cut(s)	320, 354, 587, 904
AlwNI	CAGNNNCTG	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	418
ApoI	RAATTY	5 cut(s)	320, 405, 424, 501, 939
AsiGI	ACCGGT	1 cut(s)	913
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	636
AsuHPI	GGTGA	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	466
BbsI	GAAGAC	2 cut(s)	404, 919
Bbv12I	GWGCWC	1 cut(s)	802
BbvCI	CCTCAGC	1 cut(s)	240
BccI	CCATC	3 cut(s)	49, 479, 871
BciT130I	CCWGG	1 cut(s)	844
BcoDI	GTCTC	4 cut(s)	320, 354, 587, 904
BfaI	CTAG	4 cut(s)	101, 114, 390, 420
BfmI	CTRYAG	3 cut(s)	84, 276, 434
BfoI	RGCGCY	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	844
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	636
BmrFI	CCNGG	1 cut(s)	844
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	404, 919
BpmI	CTGGAG	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	3 cut(s)	47, 441, 661
BsaI	GGTCTC	2 cut(s)	587, 904
BsaWI	WCCGGW	1 cut(s)	913
Bse118I	RCCGGY	1 cut(s)	913
Bse1I	ACTGG	3 cut(s)	184, 234, 524
BseBI	CCWGG	1 cut(s)	844
BseGI	GGATG	1 cut(s)	800
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	184, 234, 524
BseRI	GAGGAG	2 cut(s)	50, 922
BshTI	ACCGGT	1 cut(s)	913
BsiHKAI	GWGCWC	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	914
BsmAI	GTCTC	4 cut(s)	320, 354, 587, 904
BsmI	GAATGC	3 cut(s)	287, 560, 596
Bso31I	GGTCTC	2 cut(s)	587, 904
Bsp1286I	GDGCHC	1 cut(s)	802
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	300, 462
BspCNI	CTCAG	1 cut(s)	232
BspTNI	GGTCTC	2 cut(s)	587, 904
BsrFI	RCCGGY	1 cut(s)	913
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	184, 234, 524
BssAI	RCCGGY	1 cut(s)	913
BssMI	GATC	2 cut(s)	300, 462
BssSI	CACGAG	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	2 cut(s)	331, 438
Bst6I	CTCTTC	1 cut(s)	858
BstAUI	TGTACA	1 cut(s)	603
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	800
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	303, 465
BstMAI	GTCTC	4 cut(s)	320, 354, 587, 904
BstMBI	GATC	2 cut(s)	300, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNI	CCWGG	1 cut(s)	844
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	842
BstSFI	CTRYAG	3 cut(s)	84, 276, 434
BstV2I	GAAGAC	2 cut(s)	404, 919
BtsCI	GGATG	1 cut(s)	800
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	4 cut(s)	241, 443, 545, 872
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	913
Cfr13I	GGNCC	1 cut(s)	636
Csp6I	GTAC	5 cut(s)	156, 229, 335, 604, 630
CspAI	ACCGGT	1 cut(s)	913
CviAII	CATG	5 cut(s)	28, 45, 482, 650, 956
CviJI	RGCY	7 cut(s)	100, 110, 189, 491, 565, 742, 887
CviKI_1	RGCY	7 cut(s)	100, 110, 189, 491, 565, 742, 887
CviQI	GTAC	5 cut(s)	156, 229, 335, 604, 630
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	302, 464
DpnII	GATC	2 cut(s)	300, 462
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco31I	GGTCTC	2 cut(s)	587, 904
Eco47I	GGWCC	1 cut(s)	636
Eco47III	AGCGCT	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	365, 554
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	842
EcoT22I	ATGCAT	1 cut(s)	483
FaeI	CATG	5 cut(s)	31, 48, 485, 653, 959
FatI	CATG	5 cut(s)	27, 44, 481, 649, 955
FokI	GGATG	1 cut(s)	807
FspBI	CTAG	4 cut(s)	101, 114, 390, 420
GlaI	GCGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	923
HaeII	RGCGCY	1 cut(s)	420
HapII	CCGG	1 cut(s)	914
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	5 cut(s)	31, 48, 485, 653, 959
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	832, 850, 898
HpaII	CCGG	1 cut(s)	914
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	2 cut(s)	247, 517
Hpy188I	TCNGA	2 cut(s)	319, 837
Hpy188III	TCNNGA	5 cut(s)	266, 410, 458, 466, 902
Hpy8I	GTNNAC	2 cut(s)	247, 517
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	742
HpyCH4III	ACNGT	2 cut(s)	331, 438
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	7 cut(s)	4, 145, 287, 365, 481, 659, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	5 cut(s)	31, 48, 485, 653, 959
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	300, 462
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	4 cut(s)	101, 114, 390, 420
MaeII	ACGT	1 cut(s)	369
MalI	GATC	2 cut(s)	302, 464
MboI	GATC	2 cut(s)	300, 462
MboII	GAAGA	6 cut(s)	68, 215, 409, 798, 845, 919
MhlI	GDGCHC	1 cut(s)	802
MluCI	AATT	8 cut(s)	5, 149, 307, 320, 405, 424, 501, 939
MlyI	GAGTC	2 cut(s)	826, 844
Mph1103I	ATGCAT	1 cut(s)	483
MseI	TTAA	1 cut(s)	961
MslI	CAYNNNNRTG	1 cut(s)	46
MspI	CCGG	1 cut(s)	914
MspR9I	CCNGG	1 cut(s)	844
Mva1269I	GAATGC	3 cut(s)	287, 560, 596
MvaI	CCWGG	1 cut(s)	844
MwoI	GCNNNNNNNGC	1 cut(s)	704
NdeII	GATC	2 cut(s)	300, 462
NlaIII	CATG	5 cut(s)	31, 48, 485, 653, 959
NsiI	ATGCAT	1 cut(s)	483
NspI	RCATGY	1 cut(s)	959
PciI	ACATGT	1 cut(s)	955
PctI	GAATGC	3 cut(s)	287, 560, 596
PfeI	GAWTC	1 cut(s)	898
PinAI	ACCGGT	1 cut(s)	913
PleI	GAGTC	2 cut(s)	826, 844
PpsI	GAGTC	2 cut(s)	826, 844
PpuMI	RGGWCCY	1 cut(s)	636
PscI	ACATGT	1 cut(s)	955
PsiI	TTATAA	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	842
PspPI	GGNCC	1 cut(s)	636
PspPPI	RGGWCCY	1 cut(s)	636
PstNI	CAGNNNCTG	1 cut(s)	362
RsaI	GTAC	5 cut(s)	157, 230, 336, 605, 631
RsaNI	GTAC	5 cut(s)	156, 229, 335, 604, 630
RseI	CAYNNNNRTG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	961
Sau3AI	GATC	2 cut(s)	300, 462
Sau96I	GGNCC	1 cut(s)	636
SchI	GAGTC	2 cut(s)	826, 844
ScrFI	CCNGG	1 cut(s)	844
SduI	GDGCHC	1 cut(s)	802
SetI	ASST	7 cut(s)	102, 246, 372, 378, 641, 647, 744
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	3 cut(s)	84, 276, 434
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	3 cut(s)	62, 456, 640
SmoI	CTYRAG	3 cut(s)	62, 456, 640
Sse9I	AATT	8 cut(s)	5, 149, 307, 320, 405, 424, 501, 939
SspMI	CTAG	4 cut(s)	101, 114, 390, 420
StyD4I	CCNGG	1 cut(s)	842
TaaI	ACNGT	2 cut(s)	331, 438
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	105, 372
TasI	AATT	8 cut(s)	5, 149, 307, 320, 405, 424, 501, 939
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	898
Tru1I	TTAA	1 cut(s)	961
Tru9I	TTAA	1 cut(s)	961
TscAI	CASTG	4 cut(s)	241, 443, 545, 879
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	4 cut(s)	241, 443, 545, 879
VpaK11BI	GGWCC	1 cut(s)	636
XapI	RAATTY	5 cut(s)	320, 405, 424, 501, 939
XceI	RCATGY	1 cut(s)	959
XspI	CTAG	4 cut(s)	101, 114, 390, 420
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.