Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003682

Physical Location & Seq

Genomic Coordinates Reverse (-)

62593859 .. 62595265

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGTGAAGTCGGAGTCCCAATTGGGGAAAGTGAAGAGCCAATTTTTGGTGGAAATGACTACCAATCGGAGTCAAATCTCATCGTTTCGTGTATGCACTACATTGAATTTAAGTTTTCAAGATGTCGGAAGTGCTTTTGAGAGTATCTTGTCCGGTATGCTTAAGCTCTATCATAATTGCTTGAATGGTAAAGTTGGAGAAGAAAATTGGCCACCCGATGAGTGGATTGAGAAAATGGATGGGGATGCTGATAATTTGTTTGACAACAGGTCAACTAGAGAAATTAGACTTGATAATTTCCTAGTTGCTACTAGTTTGATTTATGGTGCTGATTCAATTGATATGGCACCGCTCGATAGTTCCGAAATGGTTAATGAGAGGTCAAATAAGAGACAGATGGTTACTTCTTTGTCATTGATGGAATTATTATTTTCCAAGGTGTTTAGAATGGAAACCGATGAGAAAAATCAAGCACCTATACGTCAATGGCTTATTTGTTGCTTATTACTCTGTTATTGCAAAAAGGACATTCCTACACTTGCTGGTACTTTGAACGCATGGTTGAATGGATGGAAAGTATCTTGCTCGGGAAGCAAGAATGGAGATATATGTGTGGTTAACATTAAGAAAATGGAGCATGAATTGGTTGAGCTTCGACATCACATTTCATTTCAAGGTATTGTGAACTTGCTTGAAGAGGTTGCTTTGACATGCATGGGAAAGTTACGAGATGAAATATTTTTATTCCCTAGTGGCTTTAGTTATGATAATCAGGTATGCCTTGATAATATCATGGCAAAACAATTACCAAAAGCAGCTTGTCACTCAATCTTCTTTAAGCTCATATTGGCAATTCTTAGACAAGACTCATCAAATGCTTTAAGGAGACGGCAATATGCATTGTCGCTTAGCTATTTTCAGTATTTTCAACACAAGCTTGATCTAGATATCCCATCAACAGTTCTGCAATTTTTATTACTTGATGCGCAAGAGGTGAAGATCCGGATCCCCAGCAGCTTCAATCGAGAACGAGCAAAAGTTGCTCATGCCAATTTTTCTATTTTACAAAAAGAAGTTCAATCTATTTTGAATTCGGTAATAAAAGATGCTACTCAAGGAAGTGAAATTAGAGGTGATGATGTCAAAAATGTTTCTATCATTATAGCTCTACGTAAACACACCAATTGTAGATTTGATTGTATCGTGGACGTAAATGAAACGGTTAAGGATTCCGTGGCAGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

415

Amino Acids

47.13

Weight (kDa)

6.47

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12421 FvH4_3g20453 FvH4_3g20454
malus_domestica	MD16G1253500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479611 RchiOBHm_Chr4g0393431 RchiOBHm_Chr4g0403131 RchiOBHm_Chr4g0403161 RchiOBHm_Chr4g0419441 RchiOBHm_Chr5g0007271 RchiOBHm_Chr5g0056401
rosa_multiflora	Rmu_sc0000577.1_g000014 Rmu_sc0001218.1_g000016 Rmu_sc0001787.1_g000002 Rmu_sc0001877.1_g000005 Rmu_sc0002396.1_g000007 Rmu_sc0002522.1_g000025 Rmu_sc0002699.1_g000023 Rmu_sc0002822.1_g000015 Rmu_sc0002822.1_g000017 Rmu_sc0003347.1_g000019 Rmu_sc0004174.1_g000005 Rmu_sc0004874.1_g000013 Rmu_sc0009422.1_g000002 Rmu_sc0017595.1_g000001 Rmu_sc0032285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033040 Rroxscaffold_2G00106480 Rroxscaffold_3G00267930 Rroxscaffold_4G00326640 Rroxscaffold_5G00382820 Rroxscaffold_6G00403290 Rroxscaffold_7G00191420
rosa_samantha	Rh2AG247000 Rh6CG057200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	987
AccB1I	GGYRCC	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	1002
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	3 cut(s)	994, 1000, 1013
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	106, 1090
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	3 cut(s)	24, 46, 222
AflII	CTTAAG	1 cut(s)	161
AhdI	GACNNNNNGTC	1 cut(s)	268
AhlI	ACTAGT	1 cut(s)	311
AluBI	AGCT	8 cut(s)	166, 652, 818, 841, 912, 937, 1017, 1166
AluI	AGCT	8 cut(s)	166, 652, 818, 841, 912, 937, 1017, 1166
Alw26I	GTCTC	2 cut(s)	385, 880
AlwI	GGATC	3 cut(s)	994, 1000, 1013
Ama87I	CYCGRG	1 cut(s)	586
Aor13HI	TCCGGA	1 cut(s)	1002
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	815, 1014
ApoI	RAATTY	2 cut(s)	106, 1090
AspLEI	GCGC	1 cut(s)	988
AsuHPI	GGTGA	3 cut(s)	16, 1006, 1145
AvaI	CYCGRG	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	1005
BanI	GGYRCC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	827, 1026
BccI	CCATC	5 cut(s)	233, 391, 412, 564, 961
BceAI	ACGGC	1 cut(s)	905
BcoDI	GTCTC	2 cut(s)	385, 880
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	5 cut(s)	276, 302, 312, 750, 944
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	816, 1015
BlpI	GCTNAGC	1 cut(s)	908
BlsI	GCNGC	2 cut(s)	817, 1016
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	586
BmiI	GGNNCC	2 cut(s)	348, 1007
BmsI	GCATC	3 cut(s)	235, 973, 1096
Bpu1102I	GCTNAGC	1 cut(s)	908
BpuEI	CTTGAG	1 cut(s)	1098
BsaAI	YACGTR	1 cut(s)	1172
BsaBI	GATNNNNATC	1 cut(s)	1004
BsaJI	CCNNGG	2 cut(s)	435, 1233
BsaWI	WCCGGW	2 cut(s)	152, 1002
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 46, 222
Bse8I	GATNNNNATC	1 cut(s)	1004
BseAI	TCCGGA	1 cut(s)	1002
BseDI	CCNNGG	2 cut(s)	435, 1233
BseGI	GGATG	3 cut(s)	244, 250, 575
BseJI	GATNNNNATC	1 cut(s)	1004
BseLI	CCNNNNNNNGG	3 cut(s)	24, 46, 222
BseXI	GCAGC	2 cut(s)	827, 1026
BseYI	CCCAGC	1 cut(s)	1010
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	153, 1003
BslI	CCNNNNNNNGG	3 cut(s)	24, 46, 222
BsmAI	GTCTC	2 cut(s)	385, 880
BsmBI	CGTCTC	1 cut(s)	880
BsnI	GGCC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	586
Bsp13I	TCCGGA	1 cut(s)	1002
Bsp143I	GATC	3 cut(s)	940, 999, 1005
Bsp1720I	GCTNAGC	1 cut(s)	908
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	211
BspEI	TCCGGA	1 cut(s)	1002
BspLI	GGNNCC	2 cut(s)	348, 1007
BspPI	GGATC	3 cut(s)	994, 1000, 1013
BspQI	GCTCTTC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	346
BspTI	CTTAAG	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	435, 1233
BssMI	GATC	3 cut(s)	940, 999, 1005
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	961, 1222
Bst6I	CTCTTC	2 cut(s)	29, 690
BstAFI	CTTAAG	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstBAI	YACGTR	1 cut(s)	1172
BstDEI	CTNAG	2 cut(s)	857, 908
BstDSI	CCRYGG	1 cut(s)	1233
BstF5I	GGATG	3 cut(s)	244, 250, 575
BstHHI	GCGC	1 cut(s)	988
BstKTI	GATC	3 cut(s)	943, 1002, 1008
BstMAI	GTCTC	2 cut(s)	385, 880
BstMBI	GATC	3 cut(s)	940, 999, 1005
BstMWI	GCNNNNNNNGC	2 cut(s)	591, 1040
BstNSI	RCATGY	1 cut(s)	714
BstSNI	TACGTA	1 cut(s)	1172
BstV1I	GCAGC	2 cut(s)	827, 1026
BstX2I	RGATCY	2 cut(s)	999, 1005
BstYI	RGATCY	2 cut(s)	999, 1005
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	1233
BtsCI	GGATG	3 cut(s)	244, 250, 575
BtsI	GCAGTG	1 cut(s)	1245
BtsIMutI	CAGTG	1 cut(s)	1245
CfoI	GCGC	1 cut(s)	988
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	6 cut(s)	558, 638, 711, 715, 793, 1046
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	2 cut(s)	857, 908
DpnI	GATC	3 cut(s)	942, 1001, 1007
DpnII	GATC	3 cut(s)	940, 999, 1005
DriI	GACNNNNNGTC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	29, 690
Eam1105I	GACNNNNNGTC	1 cut(s)	268
EarI	CTCTTC	2 cut(s)	29, 690
Eco105I	TACGTA	1 cut(s)	1172
Eco130I	CCWWGG	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	949
Eco88I	CYCGRG	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	1090
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	2 cut(s)	716, 901
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	880
FaeI	CATG	6 cut(s)	561, 641, 714, 718, 796, 1049
FatI	CATG	6 cut(s)	557, 637, 710, 714, 792, 1045
Fnu4HI	GCNGC	2 cut(s)	816, 1015
FokI	GGATG	3 cut(s)	251, 257, 582
Fsp4HI	GCNGC	2 cut(s)	816, 1015
FspBI	CTAG	5 cut(s)	276, 302, 312, 750, 944
FspI	TGCGCA	1 cut(s)	987
GlaI	GCGC	1 cut(s)	987
GluI	GCNGC	2 cut(s)	816, 1015
GsaI	CCCAGC	1 cut(s)	1014
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	2 cut(s)	153, 1003
HhaI	GCGC	1 cut(s)	988
Hin1II	CATG	6 cut(s)	561, 641, 714, 718, 796, 1049
Hin6I	GCGC	1 cut(s)	986
HinP1I	GCGC	1 cut(s)	986
HincII	GTYRAC	2 cut(s)	273, 619
HindII	GTYRAC	2 cut(s)	273, 619
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	5 cut(s)	14, 70, 332, 866, 1229
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	153, 1003
HphI	GGTGA	3 cut(s)	16, 1006, 1145
Hpy166II	GTNNAC	5 cut(s)	273, 619, 685, 1175, 1207
Hpy188I	TCNGA	4 cut(s)	13, 69, 128, 364
Hpy188III	TCNNGA	5 cut(s)	119, 588, 944, 1003, 1025
Hpy8I	GTNNAC	5 cut(s)	273, 619, 685, 1175, 1207
HpyCH4III	ACNGT	2 cut(s)	961, 1222
HpyCH4IV	ACGT	3 cut(s)	481, 1171, 1209
HpyCH4V	TGCA	5 cut(s)	96, 519, 714, 899, 967
HpyF10VI	GCNNNNNNNGC	2 cut(s)	591, 1040
HpyF3I	CTNAG	2 cut(s)	857, 908
HpySE526I	ACGT	3 cut(s)	481, 1171, 1209
Hsp92II	CATG	6 cut(s)	561, 641, 714, 718, 796, 1049
HspAI	GCGC	1 cut(s)	986
Kpn2I	TCCGGA	1 cut(s)	1002
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	940, 999, 1005
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	634
LpnPI	CCDG	6 cut(s)	166, 253, 528, 758, 1016, 1024
Lsp1109I	GCAGC	2 cut(s)	827, 1026
LweI	GCATC	3 cut(s)	235, 973, 1096
MaeI	CTAG	5 cut(s)	276, 302, 312, 750, 944
MaeII	ACGT	3 cut(s)	481, 1171, 1209
MaeIII	GTNAC	3 cut(s)	400, 723, 821
MalI	GATC	3 cut(s)	942, 1001, 1007
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	3 cut(s)	940, 999, 1005
MboII	GAAGA	5 cut(s)	46, 212, 707, 823, 1009
MfeI	CAATTG	3 cut(s)	20, 336, 1183
MflI	RGATCY	2 cut(s)	999, 1005
MlsI	TGGCCA	1 cut(s)	211
MluNI	TGGCCA	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	23, 79, 860
MmeI	TCCRAC	2 cut(s)	106, 175
MnlI	CCTC	4 cut(s)	372, 691, 985, 1124
Mox20I	TGGCCA	1 cut(s)	211
Mph1103I	ATGCAT	2 cut(s)	716, 901
MroI	TCCGGA	1 cut(s)	1002
MscI	TGGCCA	1 cut(s)	211
MseI	TTAA	9 cut(s)	110, 162, 372, 618, 624, 837, 881, 1224, 1246
Msp20I	TGGCCA	1 cut(s)	211
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	2 cut(s)	153, 1003
MunI	CAATTG	3 cut(s)	20, 336, 1183
MwoI	GCNNNNNNNGC	2 cut(s)	591, 1040
NdeII	GATC	3 cut(s)	940, 999, 1005
NlaIII	CATG	6 cut(s)	561, 641, 714, 718, 796, 1049
NlaIV	GGNNCC	2 cut(s)	348, 1007
NmuCI	GTSAC	1 cut(s)	821
NsbI	TGCGCA	1 cut(s)	987
NsiI	ATGCAT	2 cut(s)	716, 901
NspI	RCATGY	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	332, 1229
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	817, 1016
PleI	GAGTC	3 cut(s)	22, 78, 860
PpsI	GAGTC	3 cut(s)	22, 78, 860
Ppu21I	YACGTR	1 cut(s)	1172
PspFI	CCCAGC	1 cut(s)	1010
PspN4I	GGNNCC	2 cut(s)	348, 1007
PsuI	RGATCY	2 cut(s)	999, 1005
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	9 cut(s)	110, 162, 372, 618, 624, 837, 881, 1224, 1246
SatI	GCNGC	2 cut(s)	816, 1015
Sau3AI	GATC	3 cut(s)	940, 999, 1005
SchI	GAGTC	3 cut(s)	23, 79, 860
SfaNI	GCATC	3 cut(s)	235, 973, 1096
SmlI	CTYRAG	2 cut(s)	161, 1113
SmoI	CTYRAG	2 cut(s)	161, 1113
SnaBI	TACGTA	1 cut(s)	1172
SpeI	ACTAGT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	5 cut(s)	276, 302, 312, 750, 944
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	961, 1222
TaiI	ACGT	3 cut(s)	484, 1174, 1212
TaqI	TCGA	3 cut(s)	354, 655, 1024
TfiI	GAWTC	2 cut(s)	332, 1229
Tru1I	TTAA	9 cut(s)	110, 162, 372, 618, 624, 837, 881, 1224, 1246
Tru9I	TTAA	9 cut(s)	110, 162, 372, 618, 624, 837, 881, 1224, 1246
TscAI	CASTG	1 cut(s)	1245
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	2 cut(s)	815, 1014
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	4 cut(s)	654, 657, 747, 1230
TspGWI	ACGGA	1 cut(s)	1222
TspRI	CASTG	1 cut(s)	1245
Van91I	CCANNNNNTGG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	106, 1090
XbaI	TCTAGA	1 cut(s)	943
XceI	RCATGY	1 cut(s)	714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XspI	CTAG	5 cut(s)	276, 302, 312, 750, 944
Zsp2I	ATGCAT	2 cut(s)	716, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.