RchiOBHm_Chr5g0056401

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
60065837 .. 60067583
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33330

Sequence Viewer

Length: 801 bp
ATGTTTACAACTTATGGTATCAAAGATGTTCATGCAAGTCATCTTTCCTGCATGAGAAATGTTAATGTTCCAGATCAGTTTGTGAAAGCAATTAGATCAACAGCAAACGGGAAAGCTATGATGGAGTTGAATATGGGGTTGTATACAAATATTGGACTCCATGATTTTTCATTAGATTCTCAGAGTCCAACACTTGGGTTTGAGCTGCTGTTTGCAAACATGAAGTTCAGAAAAGTATTGTGCATGAAAATGTACATGGTTGCTAAGAACATGGTTGCTTCGGGAGCTACCACTCAAGGCCACATGCTACATGACAAGGTCATTGAAATTTCCTCTCAGCTCAATCAAGCTAATGCATGTACAGCTTTGGGTAATTATGGTCATGCGGAGATGAAAAGACTTGAGCAAGAGACCAATGAAAAATGTGTTGCACTTGCAATTATTCCAATGGGCAATACAGACTTGGTATCAGAAGAAATTGAACAGCCTTTGTTTCTTAATGTCATTTTGCAGGTCCTTGATTTCTCTACTTACTCAGATAATAATCTTGATATCTTATTCGATGATGTCCCTATTGTTGGAATGTTGAAAACAAGTGCTATTGATTGGCTACTTATTGTTCCCTGTTTATTAACGAATGGTGACTCCACTCCGACAGTAATTACTTGGCTATCGAAGCAAAAGGCTCACTCACAAAGCTCAAGCAAGTATGCATCCCCACTTGGAAACTTCTCAACTGCCACCATGGAGTTGCTCAGCCATATTGTACTTGAAGAATGTGAATGCATGGGTAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.37

Weight (kDa)

5.3

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AccB7I CCANNNNNTGG 1 cut(s) 194
AccI GTMKAC 1 cut(s) 143
AciI CCGC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 327
AfaI GTAC 3 cut(s) 254, 361, 768
AfiI CCNNNNNNNGG 2 cut(s) 194, 578
AgsI TTSAA 5 cut(s) 130, 326, 482, 589, 773
AluBI AGCT 7 cut(s) 116, 205, 287, 340, 350, 365, 699
AluI AGCT 7 cut(s) 116, 205, 287, 340, 350, 365, 699
Alw26I GTCTC 1 cut(s) 404
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 653
AvaII GGWCC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 502
BisI GCNGC 1 cut(s) 206
BlpI GCTNAGC 1 cut(s) 755
BlsI GCNGC 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 514
BmsI GCATC 1 cut(s) 722
Bpu1102I GCTNAGC 1 cut(s) 755
BpuEI CTTGAG 3 cut(s) 279, 422, 685
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 744
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 578
Bse8I GATNNNNATC 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 744
BseGI GGATG 1 cut(s) 713
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 2 cut(s) 194, 578
BseMII CTCAG 4 cut(s) 194, 350, 549, 769
BseXI GCAGC 1 cut(s) 192
BshFI GGCC 1 cut(s) 300
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 194, 578
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 1 cut(s) 300
Bso31I GGTCTC 1 cut(s) 404
Bsp1407I TGTACA 2 cut(s) 252, 359
Bsp143I GATC 2 cut(s) 73, 95
Bsp1720I GCTNAGC 1 cut(s) 755
Bsp19I CCATGG 1 cut(s) 744
BspACI CCGC 1 cut(s) 386
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 4 cut(s) 193, 349, 548, 768
BspMI ACCTGC 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 404
BsrGI TGTACA 2 cut(s) 252, 359
BssECI CCNNGG 1 cut(s) 744
BssMI GATC 2 cut(s) 73, 95
BssNAI GTATAC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 744
Bst1107I GTATAC 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 658
BstAUI TGTACA 2 cut(s) 252, 359
BstDEI CTNAG 5 cut(s) 180, 264, 336, 535, 755
BstDSI CCRYGG 1 cut(s) 744
BstF5I GGATG 1 cut(s) 713
BstKTI GATC 2 cut(s) 76, 98
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 2 cut(s) 73, 95
BstMWI GCNNNNNNNGC 3 cut(s) 284, 362, 676
BstNSI RCATGY 2 cut(s) 307, 360
BstV1I GCAGC 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 744
BtsCI GGATG 1 cut(s) 713
BveI ACCTGC 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 514
Csp6I GTAC 3 cut(s) 253, 360, 767
CviQI GTAC 3 cut(s) 253, 360, 767
DdeI CTNAG 5 cut(s) 180, 264, 336, 535, 755
DpnI GATC 2 cut(s) 75, 97
DpnII GATC 2 cut(s) 73, 95
Eco130I CCWWGG 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 514
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 744
EcoT22I ATGCAT 3 cut(s) 358, 715, 788
ErhI CCWWGG 1 cut(s) 744
FaqI GGGAC 1 cut(s) 554
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 700
Fsp4HI GCNGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 1 cut(s) 300
HinfI GANTC 4 cut(s) 156, 176, 184, 644
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 2 cut(s) 6, 144
Hpy188I TCNGA 5 cut(s) 183, 230, 472, 538, 654
Hpy188III TCNNGA 3 cut(s) 71, 282, 548
Hpy8I GTNNAC 2 cut(s) 6, 144
HpyCH4III ACNGT 1 cut(s) 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 362, 676
HpyF3I CTNAG 5 cut(s) 180, 264, 336, 535, 755
Kzo9I GATC 2 cut(s) 73, 95
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 4 cut(s) 61, 84, 497, 637
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 1 cut(s) 722
MaeIII GTNAC 1 cut(s) 641
MalI GATC 2 cut(s) 75, 97
MboI GATC 2 cut(s) 73, 95
MboII GAAGA 2 cut(s) 485, 785
MluCI AATT 6 cut(s) 90, 327, 373, 438, 477, 660
MlyI GAGTC 3 cut(s) 150, 193, 638
MmeI TCCRAC 3 cut(s) 212, 559, 677
MnlI CCTC 1 cut(s) 343
Mph1103I ATGCAT 3 cut(s) 358, 715, 788
MseI TTAA 4 cut(s) 63, 498, 632, 799
MslI CAYNNNNRTG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 788
MwoI GCNNNNNNNGC 3 cut(s) 284, 362, 676
NcoI CCATGG 1 cut(s) 744
NdeII GATC 2 cut(s) 73, 95
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 3 cut(s) 358, 715, 788
NspI RCATGY 2 cut(s) 307, 360
PctI GAATGC 1 cut(s) 788
PfeI GAWTC 1 cut(s) 176
PflFI GACNNNGTC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 3 cut(s) 150, 192, 638
PpsI GAGTC 3 cut(s) 150, 192, 638
PpuMI RGGWCCY 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 514
PspPI GGNCC 1 cut(s) 514
PspPPI RGGWCCY 1 cut(s) 514
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 3 cut(s) 254, 361, 768
RsaNI GTAC 3 cut(s) 253, 360, 767
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 4 cut(s) 63, 498, 632, 799
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 73, 95
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 3 cut(s) 150, 193, 638
SetI ASST 9 cut(s) 118, 207, 289, 321, 342, 352, 367, 516, 701
SfaNI GCATC 1 cut(s) 722
SinI GGWCC 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 3 cut(s) 294, 401, 700
SmoI CTYRAG 3 cut(s) 294, 401, 700
Sse9I AATT 6 cut(s) 90, 327, 373, 438, 477, 660
SsiI CCGC 1 cut(s) 386
SspI AATATT 1 cut(s) 151
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 1 cut(s) 658
TaqI TCGA 2 cut(s) 561, 674
TasI AATT 6 cut(s) 90, 327, 373, 438, 477, 660
TatI WGTACW 3 cut(s) 252, 359, 766
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 4 cut(s) 63, 498, 632, 799
Tru9I TTAA 4 cut(s) 63, 498, 632, 799
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 6 cut(s) 20, 159, 236, 260, 407, 432
Tth111I GACNNNGTC 1 cut(s) 317
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 1 cut(s) 327
XceI RCATGY 2 cut(s) 307, 360
XmiI GTMKAC 1 cut(s) 143
Zsp2I ATGCAT 3 cut(s) 358, 715, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.