Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002822.1

Orthogroup ID

OG0003682

Physical Location & Seq

Genomic Coordinates Forward (+)

67841 .. 70098

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002822.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgcttgatctagatatcccatcaacagttctacaatttttgttgcttgatgagcaagaggtgccttctagttattcttctattacaagtcaggaaggacaacaccatatggaaagagtggtggctaggttaaatgttcctgcagattggaaaaagtggcagatctatttgttgcttgtaggaatgtttttggcttttgcagttgcattttatatcttttttgagaagtctggtaatccttggaacttccctcttgaaaaatatcaaccagcaagacctgaattctgggaaattcaaaagttatgtttgcttcatagcttttgctattaccatatcaatgcaccaagacatgagttgggagctgatgtgatatcttcagatttttctcttcttaatgtggatgacctcgcagatcggtttgttgcacttgttgatttcttgggtttgaaagaagtactgaacttgggtgctttcccttattttccttcccttgcaatggcatttctgggcttggatcctggggatcctaacaaattgccgctgaatcttgctgctggcatttactgcttcttgctgacgttgacgtcgctacgtaccactggctctggcactgggccgggaaggctgcttcccggcgaggtcttggtcgcttctgactaccatgggccgccggcagtggctgagcatgggctccatgggccgccggcaacttggagagattcttcctcctcgcatatatttggttcaagccacttggagagaatgatcagcgtctcctgggcttctagaaatgaccggtggctcagccagaggtggccggaggacggagatatcacggcggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006888 GO:0006950 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0009267 GO:0009306 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015698 GO:0015833 GO:0016020 GO:0016021 GO:0016036 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031224 GO:0031227 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0033554 GO:0042175 GO:0042594 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071496 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098772 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

WD40

Protein Analysis

281

Amino Acids

31.48

Weight (kDa)

5.11

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12421 FvH4_3g20453 FvH4_3g20454
malus_domestica	MD16G1253500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479611 RchiOBHm_Chr4g0393431 RchiOBHm_Chr4g0403131 RchiOBHm_Chr4g0403161 RchiOBHm_Chr4g0419441 RchiOBHm_Chr5g0007271 RchiOBHm_Chr5g0056401
rosa_multiflora	Rmu_sc0000577.1_g000014 Rmu_sc0001218.1_g000016 Rmu_sc0001787.1_g000002 Rmu_sc0001877.1_g000005 Rmu_sc0002396.1_g000007 Rmu_sc0002522.1_g000025 Rmu_sc0002699.1_g000023 Rmu_sc0002822.1_g000015 Rmu_sc0002822.1_g000017 Rmu_sc0003347.1_g000019 Rmu_sc0004174.1_g000005 Rmu_sc0004874.1_g000013 Rmu_sc0009422.1_g000002 Rmu_sc0017595.1_g000001 Rmu_sc0032285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033040 Rroxscaffold_2G00106480 Rroxscaffold_3G00267930 Rroxscaffold_4G00326640 Rroxscaffold_5G00382820 Rroxscaffold_6G00403290 Rroxscaffold_7G00191420
rosa_samantha	Rh2AG247000 Rh6CG057200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	583
AatII	GACGTC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	61
AciI	CCGC	4 cut(s)	539, 668, 701, 839
AclWI	GGATC	4 cut(s)	509, 518, 522, 531
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	2 cut(s)	281, 291
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	2 cut(s)	456, 595
AfiI	CCNNNNNNNGG	2 cut(s)	496, 824
AgeI	ACCGGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	257, 296, 448, 747
AjnI	CCWGG	2 cut(s)	517, 776
AluBI	AGCT	2 cut(s)	318, 362
AluI	AGCT	2 cut(s)	318, 362
Alw26I	GTCTC	1 cut(s)	778
AlwI	GGATC	4 cut(s)	509, 518, 522, 531
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	4 cut(s)	614, 665, 698, 815
ApeKI	GCWGC	2 cut(s)	551, 625
ApoI	RAATTY	2 cut(s)	281, 291
AsiGI	ACCGGT	1 cut(s)	795
AspS9I	GGNCC	3 cut(s)	614, 665, 698
AsuC2I	CCSGG	2 cut(s)	618, 633
BamHI	GGATCC	2 cut(s)	514, 523
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	538, 612
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	519, 778
BclI	TGATCA	1 cut(s)	765
BcnI	CCSGG	2 cut(s)	618, 633
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	4 cut(s)	11, 69, 126, 786
BfmI	CTRYAG	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	622
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	5 cut(s)	539, 552, 626, 668, 701
BlpI	GCTNAGC	2 cut(s)	681, 803
BlsI	GCNGC	5 cut(s)	540, 553, 627, 669, 702
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	4 cut(s)	519, 618, 633, 778
BmgT120I	GGNCC	3 cut(s)	614, 665, 698
BmiI	GGNNCC	4 cut(s)	63, 516, 525, 692
BmrFI	CCNGG	4 cut(s)	519, 618, 633, 778
BmrI	ACTGGG	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	621
Bpu1102I	GCTNAGC	2 cut(s)	681, 803
BpuMI	CCSGG	2 cut(s)	618, 633
BsaAI	YACGTR	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	239, 518, 661, 694, 777
BsaWI	WCCGGW	1 cut(s)	795
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 824
Bse118I	RCCGGY	3 cut(s)	670, 703, 795
Bse1I	ACTGG	2 cut(s)	604, 616
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	519, 778
BseDI	CCNNGG	5 cut(s)	239, 518, 661, 694, 777
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	496, 824
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	672, 817
BseNI	ACTGG	2 cut(s)	604, 616
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	2 cut(s)	538, 612
BshFI	GGCC	4 cut(s)	616, 667, 700, 817
BshNI	GGYRCC	1 cut(s)	61
BshTI	ACCGGT	1 cut(s)	795
BsiSI	CCGG	6 cut(s)	617, 633, 671, 704, 796, 818
BslI	CCNNNNNNNGG	2 cut(s)	496, 824
BsmAI	GTCTC	1 cut(s)	778
BsmBI	CGTCTC	1 cut(s)	778
BsnI	GGCC	4 cut(s)	616, 667, 700, 817
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
Bsp1720I	GCTNAGC	2 cut(s)	681, 803
Bsp19I	CCATGG	2 cut(s)	661, 694
BspACI	CCGC	4 cut(s)	539, 668, 701, 839
BspANI	GGCC	4 cut(s)	616, 667, 700, 817
BspCNI	CTCAG	2 cut(s)	673, 816
BspLI	GGNNCC	4 cut(s)	63, 516, 525, 692
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	4 cut(s)	509, 518, 522, 531
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	3 cut(s)	670, 703, 795
BsrI	ACTGG	2 cut(s)	604, 616
BssAI	RCCGGY	3 cut(s)	670, 703, 795
BssECI	CCNNGG	5 cut(s)	239, 518, 661, 694, 777
BssMI	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
BssNI	GRCGYC	1 cut(s)	584
BssT1I	CCWWGG	3 cut(s)	239, 661, 694
Bst2UI	CCWGG	2 cut(s)	519, 778
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	584
BstAPI	GCANNNNNTGC	2 cut(s)	61, 564
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	556, 672, 705
BstDEI	CTNAG	2 cut(s)	681, 803
BstDSI	CCRYGG	2 cut(s)	661, 694
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	6 cut(s)	10, 165, 415, 517, 526, 768
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 61, 564, 622, 697
BstNI	CCWGG	2 cut(s)	519, 778
BstSCI	CCNGG	4 cut(s)	517, 616, 631, 776
BstSFI	CTRYAG	1 cut(s)	141
BstSNI	TACGTA	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	538, 612
BstX2I	RGATCY	3 cut(s)	162, 514, 523
BstYI	RGATCY	3 cut(s)	162, 514, 523
BsuRI	GGCC	4 cut(s)	616, 667, 700, 817
BtgI	CCRYGG	2 cut(s)	661, 694
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	3 cut(s)	597, 609, 681
Cac8I	GCNNGC	3 cut(s)	556, 672, 705
CaiI	CAGNNNCTG	1 cut(s)	680
Cfr10I	RCCGGY	3 cut(s)	670, 703, 795
Cfr13I	GGNCC	3 cut(s)	614, 665, 698
CseI	GACGC	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	455, 594
CspAI	ACCGGT	1 cut(s)	795
CviAII	CATG	4 cut(s)	350, 662, 686, 695
CviQI	GTAC	2 cut(s)	455, 594
DdeI	CTNAG	2 cut(s)	681, 803
DpnI	GATC	6 cut(s)	9, 164, 414, 516, 525, 767
DpnII	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
DrdI	GACNNNNNNGTC	1 cut(s)	583
DseDI	GACNNNNNNGTC	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	815
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco105I	TACGTA	1 cut(s)	593
Eco130I	CCWWGG	3 cut(s)	239, 661, 694
Eco24I	GRGCYC	1 cut(s)	693
Eco32I	GATATC	3 cut(s)	16, 372, 832
Eco57I	CTGAAG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	517, 776
EcoRV	GATATC	3 cut(s)	16, 372, 832
EcoT14I	CCWWGG	3 cut(s)	239, 661, 694
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	3 cut(s)	239, 661, 694
Esp3I	CGTCTC	1 cut(s)	778
FaeI	CATG	4 cut(s)	353, 665, 689, 698
FatI	CATG	4 cut(s)	349, 661, 685, 694
FauNDI	CATATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	5 cut(s)	539, 552, 626, 668, 701
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	5 cut(s)	539, 552, 626, 668, 701
FspBI	CTAG	4 cut(s)	11, 69, 126, 786
GluI	GCNGC	5 cut(s)	539, 552, 626, 668, 701
HaeIII	GGCC	4 cut(s)	616, 667, 700, 817
HapII	CCGG	6 cut(s)	617, 633, 671, 704, 796, 818
HgaI	GACGC	1 cut(s)	760
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	4 cut(s)	353, 665, 689, 698
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	2 cut(s)	544, 719
HpaII	CCGG	6 cut(s)	617, 633, 671, 704, 796, 818
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	2 cut(s)	379, 655
Hpy188III	TCNNGA	4 cut(s)	11, 92, 254, 786
Hpy8I	GTNNAC	1 cut(s)	582
Hpy99I	CGWCG	1 cut(s)	589
HpyAV	CCTTC	4 cut(s)	75, 89, 495, 615
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	3 cut(s)	578, 584, 592
HpyCH4V	TGCA	6 cut(s)	143, 200, 206, 341, 425, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 61, 564, 622, 697
HpyF3I	CTNAG	2 cut(s)	681, 803
HpySE526I	ACGT	3 cut(s)	578, 584, 592
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	4 cut(s)	353, 665, 689, 698
KroI	GCCGGC	2 cut(s)	670, 703
KroNI	GCCGGC	2 cut(s)	672, 705
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
LmnI	GCTCC	2 cut(s)	359, 696
Lsp1109I	GCAGC	2 cut(s)	538, 612
MaeI	CTAG	4 cut(s)	11, 69, 126, 786
MaeII	ACGT	3 cut(s)	578, 584, 592
MalI	GATC	6 cut(s)	9, 164, 414, 516, 525, 767
MboI	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
MboII	GAAGA	4 cut(s)	69, 366, 380, 714
MflI	RGATCY	3 cut(s)	162, 514, 523
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	4 cut(s)	35, 281, 291, 533
MnlI	CCTC	8 cut(s)	52, 261, 416, 631, 736, 739, 804, 814
MroNI	GCCGGC	2 cut(s)	670, 703
MseI	TTAA	2 cut(s)	131, 393
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	6 cut(s)	617, 633, 671, 704, 796, 818
MspR9I	CCNGG	4 cut(s)	519, 618, 633, 778
MvaI	CCWGG	2 cut(s)	519, 778
MwoI	GCNNNNNNNGC	5 cut(s)	52, 61, 564, 622, 697
NaeI	GCCGGC	2 cut(s)	672, 705
NciI	CCSGG	2 cut(s)	618, 633
NcoI	CCATGG	2 cut(s)	661, 694
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
NgoMIV	GCCGGC	2 cut(s)	670, 703
NlaIII	CATG	4 cut(s)	353, 665, 689, 698
NlaIV	GGNNCC	4 cut(s)	63, 516, 525, 692
PdiI	GCCGGC	2 cut(s)	672, 705
PfeI	GAWTC	2 cut(s)	544, 719
PinAI	ACCGGT	1 cut(s)	795
PkrI	GCNGC	5 cut(s)	540, 553, 627, 669, 702
Ppu21I	YACGTR	1 cut(s)	593
Psp6I	CCWGG	2 cut(s)	517, 776
PspGI	CCWGG	2 cut(s)	517, 776
PspN4I	GGNNCC	4 cut(s)	63, 516, 525, 692
PspPI	GGNCC	3 cut(s)	614, 665, 698
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	3 cut(s)	162, 514, 523
RsaI	GTAC	2 cut(s)	456, 595
RsaNI	GTAC	2 cut(s)	455, 594
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	131, 393
SatI	GCNGC	5 cut(s)	539, 552, 626, 668, 701
Sau3AI	GATC	6 cut(s)	7, 162, 412, 514, 523, 765
Sau96I	GGNCC	3 cut(s)	614, 665, 698
ScaI	AGTACT	1 cut(s)	456
ScrFI	CCNGG	4 cut(s)	519, 618, 633, 778
SduI	GDGCHC	1 cut(s)	693
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	336
SnaBI	TACGTA	1 cut(s)	593
Sse9I	AATT	4 cut(s)	35, 281, 291, 533
SsiI	CCGC	4 cut(s)	539, 668, 701, 839
SspMI	CTAG	4 cut(s)	11, 69, 126, 786
StyD4I	CCNGG	4 cut(s)	517, 616, 631, 776
StyI	CCWWGG	3 cut(s)	239, 661, 694
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	3 cut(s)	581, 587, 595
TasI	AATT	4 cut(s)	35, 281, 291, 533
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	3 cut(s)	541, 670, 703
TfiI	GAWTC	2 cut(s)	544, 719
Tru1I	TTAA	2 cut(s)	131, 393
Tru9I	TTAA	2 cut(s)	131, 393
TscAI	CASTG	3 cut(s)	604, 616, 681
TseI	GCWGC	2 cut(s)	551, 625
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	3 cut(s)	604, 616, 681
XapI	RAATTY	2 cut(s)	281, 291
XbaI	TCTAGA	2 cut(s)	10, 785
XspI	CTAG	4 cut(s)	11, 69, 126, 786
ZraI	GACGTC	1 cut(s)	585
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.