Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003682

Physical Location & Seq

Genomic Coordinates Reverse (-)

30091937 .. 30093596

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTAGTTGGTGGAACTAGCACGAATTATGATCAAGAAGAGGTGCCATTGAGTTTCTTGCCTTTGGAACAAATAAGTCTTCATAAGAATGATCCAACTGGATTCTCGGTTGTCATGGAAGTTAGTGATACTAGCAGTAGTTATATTCAAATGGGTGTCCCTCAACCTATTATTAAAGATGCCCAATATGTAGAAATCAGTGCTAGTGATCTCATCAAATGGGACAAGGCCAAAATGGGGTACTACGTTGGCATTGATATATGGCTAAAGGATTATTCCTTGGAAATAGTGTGTATGGGATACAATTCGATGAAGAAGGGATATTCCTCTTTCATGTCTTCAAATCATTGGAAGAAGAGTATGGCAGATCCTCTTGCATTGGAACATTGGGCAGGCAAGGTCTACGGTTGCTACATCTCTTGTTGCATCAATAAATCCCCATCTCAACATTGTAGCATTGCGAATAGAGTTGGCCCCGAAACCGAGAATGTGTTTGATGACACCAAATGGGAGAGTTTAAGTGTTGTTATTAATGCAGTACATACAGCCGGACTCTATGTTGATCGAGGTGCTTATATTTCCGAGAAGACACTTCTTGAGTCGAGTACTCGTGGTGCAAAATGCAACACTCGGATGGCTATTCCTCACATAACAGAAAACTATGGTGCCATTAGAGATGTTCCGAGAAACAAGCACCCATGTGTATTGTGCACTCAATTCCACACATCATGGACCACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033554 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

247

Amino Acids

27.62

Weight (kDa)

6.05

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12421 FvH4_3g20453 FvH4_3g20454
malus_domestica	MD16G1253500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479611 RchiOBHm_Chr4g0393431 RchiOBHm_Chr4g0403131 RchiOBHm_Chr4g0403161 RchiOBHm_Chr4g0419441 RchiOBHm_Chr5g0007271 RchiOBHm_Chr5g0056401
rosa_multiflora	Rmu_sc0000577.1_g000014 Rmu_sc0001218.1_g000016 Rmu_sc0001787.1_g000002 Rmu_sc0001877.1_g000005 Rmu_sc0002396.1_g000007 Rmu_sc0002522.1_g000025 Rmu_sc0002699.1_g000023 Rmu_sc0002822.1_g000015 Rmu_sc0002822.1_g000017 Rmu_sc0003347.1_g000019 Rmu_sc0004174.1_g000005 Rmu_sc0004874.1_g000013 Rmu_sc0009422.1_g000002 Rmu_sc0017595.1_g000001 Rmu_sc0032285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033040 Rroxscaffold_2G00106480 Rroxscaffold_3G00267930 Rroxscaffold_4G00326640 Rroxscaffold_5G00382820 Rroxscaffold_6G00403290 Rroxscaffold_7G00191420
rosa_samantha	Rh2AG247000 Rh6CG057200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 665
AccI	GTMKAC	1 cut(s)	402
AclWI	GGATC	2 cut(s)	86, 362
AfaI	GTAC	3 cut(s)	242, 540, 607
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	149, 342
AleI	CACNNNNGTG	1 cut(s)	699
Alw21I	GWGCWC	1 cut(s)	713
Alw44I	GTGCAC	1 cut(s)	709
AlwI	GGATC	2 cut(s)	86, 362
AoxI	GGCC	2 cut(s)	228, 472
ApaLI	GTGCAC	1 cut(s)	709
AseI	ATTAAT	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	473, 732
AvaII	GGWCC	1 cut(s)	732
BaeGI	GKGCMC	1 cut(s)	713
BanI	GGYRCC	2 cut(s)	43, 665
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	3 cut(s)	71, 330, 593
Bbv12I	GWGCWC	1 cut(s)	713
BccI	CCATC	2 cut(s)	448, 628
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	3 cut(s)	18, 132, 204
BfuI	GTATCC	1 cut(s)	293
BmcAI	AGTACT	1 cut(s)	607
Bme18I	GGWCC	1 cut(s)	732
BmgT120I	GGNCC	2 cut(s)	473, 732
BmiI	GGNNCC	3 cut(s)	45, 475, 667
BmsI	GCATC	2 cut(s)	169, 435
BpiI	GAAGAC	3 cut(s)	71, 330, 593
BpuEI	CTTGAG	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	713
BshFI	GGCC	2 cut(s)	230, 474
BshNI	GGYRCC	2 cut(s)	43, 665
BsiHKAI	GWGCWC	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	549
BslFI	GGGAC	2 cut(s)	143, 236
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	2 cut(s)	143, 236
BsnI	GGCC	2 cut(s)	230, 474
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	5 cut(s)	31, 91, 208, 367, 562
BspANI	GGCC	2 cut(s)	230, 474
BspLI	GGNNCC	3 cut(s)	45, 475, 667
BspPI	GGATC	2 cut(s)	86, 362
BspT107I	GGYRCC	2 cut(s)	43, 665
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	5 cut(s)	31, 91, 208, 367, 562
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	609
Bst4CI	ACNGT	2 cut(s)	407, 739
Bst6I	CTCTTC	2 cut(s)	33, 350
BstC8I	GCNNGC	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	639
BstKTI	GATC	5 cut(s)	34, 94, 211, 370, 565
BstMBI	GATC	5 cut(s)	31, 91, 208, 367, 562
BstSLI	GKGCMC	1 cut(s)	713
BstV2I	GAAGAC	3 cut(s)	71, 330, 593
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	230, 474
BtsCI	GGATG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	205, 735
Cac8I	GCNNGC	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	473, 732
Csp6I	GTAC	3 cut(s)	241, 539, 606
CviAII	CATG	4 cut(s)	115, 334, 699, 729
CviJI	RGCY	5 cut(s)	230, 265, 474, 548, 638
CviKI_1	RGCY	5 cut(s)	230, 265, 474, 548, 638
CviQI	GTAC	3 cut(s)	241, 539, 606
DpnI	GATC	5 cut(s)	33, 93, 210, 369, 564
DpnII	GATC	5 cut(s)	31, 91, 208, 367, 562
Eam1104I	CTCTTC	2 cut(s)	33, 350
EarI	CTCTTC	2 cut(s)	33, 350
Eco130I	CCWWGG	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	4 cut(s)	118, 337, 702, 732
FaqI	GGGAC	2 cut(s)	143, 236
FatI	CATG	4 cut(s)	114, 333, 698, 728
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	402
FokI	GGATG	1 cut(s)	646
FspBI	CTAG	3 cut(s)	18, 132, 204
HaeIII	GGCC	2 cut(s)	230, 474
HapII	CCGG	1 cut(s)	549
Hin1II	CATG	4 cut(s)	118, 337, 702, 732
HinfI	GANTC	3 cut(s)	102, 552, 599
HpaII	CCGG	1 cut(s)	549
Hpy166II	GTNNAC	2 cut(s)	403, 711
Hpy188I	TCNGA	3 cut(s)	583, 633, 684
Hpy188III	TCNNGA	2 cut(s)	35, 596
Hpy8I	GTNNAC	2 cut(s)	403, 711
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	407, 739
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	6 cut(s)	377, 426, 536, 617, 624, 711
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	118, 337, 702, 732
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	31, 91, 208, 367, 562
LpnPI	CCDG	3 cut(s)	84, 378, 562
LweI	GCATC	2 cut(s)	169, 435
MaeI	CTAG	3 cut(s)	18, 132, 204
MaeII	ACGT	1 cut(s)	246
MalI	GATC	5 cut(s)	33, 93, 210, 369, 564
MboI	GATC	5 cut(s)	31, 91, 208, 367, 562
MboII	GAAGA	7 cut(s)	50, 71, 325, 330, 364, 367, 598
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	3 cut(s)	25, 304, 716
MlyI	GAGTC	2 cut(s)	546, 608
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	34, 171, 337, 381, 560, 654
MseI	TTAA	3 cut(s)	174, 518, 531
MslI	CAYNNNNRTG	3 cut(s)	87, 632, 699
MspI	CCGG	1 cut(s)	549
NdeII	GATC	5 cut(s)	31, 91, 208, 367, 562
NlaIII	CATG	4 cut(s)	118, 337, 702, 732
NlaIV	GGNNCC	3 cut(s)	45, 475, 667
OliI	CACNNNNGTG	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	546, 607
PpsI	GAGTC	2 cut(s)	546, 607
PshBI	ATTAAT	1 cut(s)	531
PspN4I	GGNNCC	3 cut(s)	45, 475, 667
PspPI	GGNCC	2 cut(s)	473, 732
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	3 cut(s)	242, 540, 607
RsaNI	GTAC	3 cut(s)	241, 539, 606
RseI	CAYNNNNRTG	3 cut(s)	87, 632, 699
SaqAI	TTAA	3 cut(s)	174, 518, 531
Sau3AI	GATC	5 cut(s)	31, 91, 208, 367, 562
Sau96I	GGNCC	2 cut(s)	473, 732
ScaI	AGTACT	1 cut(s)	607
SchI	GAGTC	2 cut(s)	546, 608
SduI	GDGCHC	1 cut(s)	713
SetI	ASST	5 cut(s)	45, 169, 249, 402, 571
SfaNI	GCATC	2 cut(s)	169, 435
SinI	GGWCC	1 cut(s)	732
SmiMI	CAYNNNNRTG	3 cut(s)	87, 632, 699
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	3 cut(s)	25, 304, 716
SspMI	CTAG	3 cut(s)	18, 132, 204
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	407, 739
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	308, 565, 602
TasI	AATT	3 cut(s)	25, 304, 716
TatI	WGTACW	2 cut(s)	538, 605
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	3 cut(s)	174, 518, 531
Tru9I	TTAA	3 cut(s)	174, 518, 531
TscAI	CASTG	2 cut(s)	205, 742
TspDTI	ATGAA	3 cut(s)	71, 322, 326
TspRI	CASTG	2 cut(s)	205, 742
VneI	GTGCAC	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	732
VspI	ATTAAT	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	3 cut(s)	18, 132, 204
ZrmI	AGTACT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.