Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003682

Physical Location & Seq

Genomic Coordinates Forward (+)

27790786 .. 27793042

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG247000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCATTTTTGTTGTGCCAGGTTGCACTAACACGCATGGGAAAGTTACAAGATGAAAGATTTTTATTCTCTGGTAGCTTTAGTTATGATAATTATGCATGTTTTGATATTGTCATGGCAAAACAATTACCAAATGCAGCTTGTCATTCAATCTTGTTTAGGCTCATATTGGGAGCTCTTAGACAAGAATCATCAGAAGCCCTAAGGAGATGGCAATATGCACTGCTTCTTAGCTCTTTTCAGTATTGTCAACACATGCGTGATCTAGATATCCCATCAACAGTTCTGCAATTTTTGTTGCTTGATGAGCAAGAGGTTGAAGATCTGGATCTCCAGAAAATTAGTCGAGAACAAGCAAAAGTTGCTCATGGAAATTTCTTTATTTTAAGAAAAAAAGCTCAATCTGTTTTGGATTTGGTAATAAATGATTCTACTCAAGGATGTGAAATTGGAGAGATGATGTCACTCTACGTTTTGGATGCAATCATATGCGTAGATCATGATGGGGTACATTCTCAAAACTCAATGCAGCAGCAAGCACAAACTCTGGAGGCTGAGCTTGCTTTGCTATTGAAAATAAAATATCTCTTTGCATCCTTTATTTCCTGTGATGAAGACTATTATGCATGTGTTGAAGGGAGAGAAATTATCTCCAATCTTAGTATCACAGCTGCCTCAAAATTTCTATTAAATTTGTTGGTCCAGCCTGAGCATGAACACCGCAAATGGTCTACTGCAATTTCTGTTGGATTAATCTCAAGTGGTCTATATATTACTGATCATAAGCAAAAGTTTGAGGAGTGTTTGGGAGTTGTTAAGTCTACCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

277

Amino Acids

31.5

Weight (kDa)

5.38

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12421 FvH4_3g20453 FvH4_3g20454
malus_domestica	MD16G1253500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479611 RchiOBHm_Chr4g0393431 RchiOBHm_Chr4g0403131 RchiOBHm_Chr4g0403161 RchiOBHm_Chr4g0419441 RchiOBHm_Chr5g0007271 RchiOBHm_Chr5g0056401
rosa_multiflora	Rmu_sc0000577.1_g000014 Rmu_sc0001218.1_g000016 Rmu_sc0001787.1_g000002 Rmu_sc0001877.1_g000005 Rmu_sc0002396.1_g000007 Rmu_sc0002522.1_g000025 Rmu_sc0002699.1_g000023 Rmu_sc0002822.1_g000015 Rmu_sc0002822.1_g000017 Rmu_sc0003347.1_g000019 Rmu_sc0004174.1_g000005 Rmu_sc0004874.1_g000013 Rmu_sc0009422.1_g000002 Rmu_sc0017595.1_g000001 Rmu_sc0032285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033040 Rroxscaffold_2G00106480 Rroxscaffold_3G00267930 Rroxscaffold_4G00326640 Rroxscaffold_5G00382820 Rroxscaffold_6G00403290 Rroxscaffold_7G00191420
rosa_samantha	Rh2AG247000 Rh6CG057200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	731, 821
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	3 cut(s)	373, 680, 691
AfaI	GTAC	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	150, 320, 574, 635, 829
AjnI	CCWGG	1 cut(s)	18
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	7 cut(s)	78, 140, 176, 234, 398, 559, 671
AluI	AGCT	7 cut(s)	78, 140, 176, 234, 398, 559, 671
Alw21I	GWGCWC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	336
ApeKI	GCWGC	4 cut(s)	137, 529, 532, 671
ApoI	RAATTY	3 cut(s)	373, 680, 691
AseI	ATTAAT	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	700
AvaII	GGWCC	1 cut(s)	700
AxyI	CCTNAGG	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	149, 541, 544, 658
BccI	CCATC	3 cut(s)	204, 283, 497
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	778
BfaI	CTAG	1 cut(s)	266
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	138, 530, 533, 672
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	4 cut(s)	139, 531, 534, 673
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	700
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	469, 602
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	2 cut(s)	317, 569
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	420, 742
BsaBI	GATNNNNATC	1 cut(s)	327
Bse21I	CCTNAGG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	20
BseGI	GGATG	3 cut(s)	446, 484, 593
BseJI	GATNNNNATC	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	546, 699
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	4 cut(s)	149, 541, 544, 658
BsiHKAI	GWGCWC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	5 cut(s)	262, 322, 328, 496, 778
Bsp1720I	GCTNAGC	1 cut(s)	555
BspACI	CCGC	1 cut(s)	721
BspCNI	CTCAG	2 cut(s)	547, 700
BspHI	TCATGA	1 cut(s)	499
BspPI	GGATC	1 cut(s)	336
BssMI	GATC	5 cut(s)	262, 322, 328, 496, 778
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	537, 561
BstDEI	CTNAG	6 cut(s)	179, 203, 230, 555, 659, 708
BstF5I	GGATG	3 cut(s)	446, 484, 593
BstKTI	GATC	5 cut(s)	265, 325, 331, 499, 781
BstMBI	GATC	5 cut(s)	262, 322, 328, 496, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 362, 560, 565
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	3 cut(s)	102, 259, 630
BstSCI	CCNGG	1 cut(s)	18
BstV1I	GCAGC	4 cut(s)	149, 541, 544, 658
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	2 cut(s)	322, 328
BstYI	RGATCY	2 cut(s)	322, 328
Bsu36I	CCTNAGG	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	446, 484, 593
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	537, 561
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	700
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	8 cut(s)	37, 99, 115, 256, 368, 500, 627, 713
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	6 cut(s)	179, 203, 230, 555, 659, 708
DpnI	GATC	5 cut(s)	264, 324, 330, 498, 780
DpnII	GATC	5 cut(s)	262, 322, 328, 496, 778
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	271
EcoT22I	ATGCAT	2 cut(s)	100, 628
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	8 cut(s)	40, 102, 118, 259, 371, 503, 630, 716
FalI	AAGNNNNNCTT	1 cut(s)	809
FatI	CATG	8 cut(s)	36, 98, 114, 255, 367, 499, 626, 712
FauNDI	CATATG	1 cut(s)	488
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	2 cut(s)	731, 821
Fnu4HI	GCNGC	4 cut(s)	138, 530, 533, 672
FokI	GGATG	3 cut(s)	453, 491, 580
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	138, 530, 533, 672
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	4 cut(s)	138, 530, 533, 672
GsuI	CTGGAG	2 cut(s)	317, 569
Hin1II	CATG	8 cut(s)	40, 102, 118, 259, 371, 503, 630, 716
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HinfI	GANTC	2 cut(s)	188, 428
Hpy166II	GTNNAC	3 cut(s)	251, 732, 822
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	6 cut(s)	266, 326, 334, 347, 500, 548
Hpy8I	GTNNAC	3 cut(s)	251, 732, 822
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 362, 560, 565
HpyF3I	CTNAG	6 cut(s)	179, 203, 230, 555, 659, 708
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	8 cut(s)	40, 102, 118, 259, 371, 503, 630, 716
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	262, 322, 328, 496, 778
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	9 cut(s)	5, 32, 57, 311, 347, 533, 619, 716, 720
Lsp1109I	GCAGC	4 cut(s)	149, 541, 544, 658
LweI	GCATC	2 cut(s)	469, 602
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	45, 462
MalI	GATC	5 cut(s)	264, 324, 330, 498, 780
MboI	GATC	5 cut(s)	262, 322, 328, 496, 778
MboII	GAAGA	2 cut(s)	332, 626
MflI	RGATCY	2 cut(s)	322, 328
MhlI	GDGCHC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	4 cut(s)	307, 544, 685, 790
Mph1103I	ATGCAT	2 cut(s)	100, 628
MseI	TTAA	4 cut(s)	386, 689, 752, 816
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	307, 362, 560, 565
NdeI	CATATG	1 cut(s)	488
NdeII	GATC	5 cut(s)	262, 322, 328, 496, 778
NlaIII	CATG	8 cut(s)	40, 102, 118, 259, 371, 503, 630, 716
NmuCI	GTSAC	1 cut(s)	462
NsiI	ATGCAT	2 cut(s)	100, 628
NspI	RCATGY	3 cut(s)	102, 259, 630
OliI	CACNNNNGTG	1 cut(s)	258
PagI	TCATGA	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	188, 428
PkrI	GCNGC	4 cut(s)	139, 531, 534, 673
PshBI	ATTAAT	1 cut(s)	752
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	700
PsuI	RGATCY	2 cut(s)	322, 328
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	386, 689, 752, 816
SatI	GCNGC	4 cut(s)	138, 530, 533, 672
Sau3AI	GATC	5 cut(s)	262, 322, 328, 496, 778
Sau96I	GGNCC	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	469, 602
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	435, 757
SmoI	CTYRAG	2 cut(s)	435, 757
SsiI	CCGC	1 cut(s)	721
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	188, 428
Tru1I	TTAA	4 cut(s)	386, 689, 752, 816
Tru9I	TTAA	4 cut(s)	386, 689, 752, 816
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	4 cut(s)	137, 529, 532, 671
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	3 cut(s)	69, 627, 729
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	700
VspI	ATTAAT	1 cut(s)	752
XapI	RAATTY	3 cut(s)	373, 680, 691
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	3 cut(s)	102, 259, 630
XmiI	GTMKAC	2 cut(s)	731, 821
XspI	CTAG	1 cut(s)	266
Zsp2I	ATGCAT	2 cut(s)	100, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.