Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002522.1

Orthogroup ID

OG0003682

Physical Location & Seq

Genomic Coordinates Forward (+)

87575 .. 88918

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002522.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

atggcaaaacaattaccaaacgcagcttgtcattcaatcttgtttaggctcatattggcaattcttagccaagaatcatcagaagccctaaggagacagcaatatgcagtgcttcttagctattttcagtattgtcaacacatgcttgatctagatatcctatcaacaggtccgcaatttctgcaatttttgttgcttgatgagcaagaggttggagatctggatctccagaaaatcagtcgagaacaagcagaagttgctcatgccaatttatttattttaagaaaagaagctcaatctattttggatttggtaataaaagattctactcaaggatgtgaaattggggagatgatgtcattctatgttttggatgcaatcatatgcgtagatcatgagagatatttcctgggccaacttcaaaacagaggtttcctcagatctggtcgttcttatcaagatggggcacattctcaaaactcaatgcatcagcgagcacaaactctggaggctgagcttgctttgcttttgagaataaaatatctctttgcatccttcatgtcccatgatgaagactattatgcatgtgttgaagggagagaaattatctccaatcttagtatagcagctgcctcaaaatttctattaaattggttggtccagcctgagcatgaacactgcaactggtttgctgcaatttctgttggattaatctcaagtggtctatatattactgaccataagcaaaagtttgagaagtgtttgggagttgttaagtctaccttggatgcccttcatataatgcagaagtcgggattcaaacaaaattatcagtgtttccttaagttgtacttgccttatgttagtgtgggaaaagcatttacaagtctgcaacatgagcatcatattgatccagtcaatgtcaagactgttacttcatctgttcatcagcaagaggtgccttctagttattcttctgttacaaatcaggaaggacatcaccatatagaaagagtggtgactaggttaaatgttcctgcagattggaaaaagtggcagatctatttgttgcttgtagggatgattttggctgttgcagttgcattttatatcttctttgagaagtcggataatttttggaacttccctctggaaaactatcaacgagcaggacctgaattggggcaattccaaagttatgtctgcttcgtaacttttgcaattaccatatcaatgcaccaagacatgagttgggagctgttgtcatatcttcagatttttctcttcttaatgtggatgacctcacagactagcttgttgaacttgttgatttcttgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

447

Amino Acids

51.48

Weight (kDa)

5.93

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12421 FvH4_3g20453 FvH4_3g20454
malus_domestica	MD16G1253500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479611 RchiOBHm_Chr4g0393431 RchiOBHm_Chr4g0403131 RchiOBHm_Chr4g0403161 RchiOBHm_Chr4g0419441 RchiOBHm_Chr5g0007271 RchiOBHm_Chr5g0056401
rosa_multiflora	Rmu_sc0000577.1_g000014 Rmu_sc0001218.1_g000016 Rmu_sc0001787.1_g000002 Rmu_sc0001877.1_g000005 Rmu_sc0002396.1_g000007 Rmu_sc0002522.1_g000025 Rmu_sc0002699.1_g000023 Rmu_sc0002822.1_g000015 Rmu_sc0002822.1_g000017 Rmu_sc0003347.1_g000019 Rmu_sc0004174.1_g000005 Rmu_sc0004874.1_g000013 Rmu_sc0009422.1_g000002 Rmu_sc0017595.1_g000001 Rmu_sc0032285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033040 Rroxscaffold_2G00106480 Rroxscaffold_3G00267930 Rroxscaffold_4G00326640 Rroxscaffold_5G00382820 Rroxscaffold_6G00403290 Rroxscaffold_7G00191420
rosa_samantha	Rh2AG247000 Rh6CG057200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	958
AccI	GTMKAC	1 cut(s)	779
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	231, 905
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	1 cut(s)	1256
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	1 cut(s)	1181
AflII	CTTAAG	1 cut(s)	842
AgsI	TTSAA	5 cut(s)	36, 422, 593, 820, 1321
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	7 cut(s)	26, 120, 293, 517, 629, 1258, 1314
AluI	AGCT	7 cut(s)	26, 120, 293, 517, 629, 1258, 1314
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	231, 905
AlwNI	CAGNNNCTG	1 cut(s)	1175
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	4 cut(s)	23, 626, 629, 692
ApoI	RAATTY	1 cut(s)	638
AseI	ATTAAT	1 cut(s)	710
AspS9I	GGNCC	4 cut(s)	170, 412, 658, 1172
AsuHPI	GGTGA	2 cut(s)	992, 1030
AvaII	GGWCC	3 cut(s)	170, 658, 1172
AxyI	CCTNAGG	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	4 cut(s)	35, 616, 638, 679
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	4 cut(s)	152, 966, 1023, 1311
BfmI	CTRYAG	1 cut(s)	1038
BfrI	CTTAAG	1 cut(s)	842
BglII	AGATCT	3 cut(s)	217, 440, 1059
BisI	GCNGC	4 cut(s)	24, 627, 630, 693
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	4 cut(s)	25, 628, 631, 694
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	3 cut(s)	170, 658, 1172
BmgT120I	GGNCC	4 cut(s)	170, 412, 658, 1172
BmiI	GGNNCC	1 cut(s)	960
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	5 cut(s)	364, 496, 560, 778, 910
BpiI	GAAGAC	1 cut(s)	579
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
BpmI	CTGGAG	2 cut(s)	212, 527
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	315, 700
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	409, 783
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 1247, 1277
Bsc4I	CCNNNNNNNGG	1 cut(s)	1181
Bse1I	ACTGG	2 cut(s)	689, 914
Bse21I	CCTNAGG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	409, 783
BseGI	GGATG	6 cut(s)	341, 379, 551, 793, 1086, 1302
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	1181
BseMII	CTCAG	3 cut(s)	451, 504, 657
BseNI	ACTGG	2 cut(s)	689, 914
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	35, 616, 638, 679
BshFI	GGCC	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	958
BsiHKAI	GWGCWC	1 cut(s)	499
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	1 cut(s)	1181
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	469, 499
Bsp143I	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
Bsp1720I	GCTNAGC	1 cut(s)	513
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	3 cut(s)	450, 505, 658
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	960
BspMAI	CTGCAG	1 cut(s)	1042
BspPI	GGATC	2 cut(s)	231, 905
BspT107I	GGYRCC	1 cut(s)	958
BspTI	CTTAAG	1 cut(s)	842
BsrI	ACTGG	2 cut(s)	689, 914
BssECI	CCNNGG	2 cut(s)	409, 783
BssMI	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	931
Bst6I	CTCTTC	1 cut(s)	1289
BstAFI	CTTAAG	1 cut(s)	842
BstAPI	GCANNNNNTGC	3 cut(s)	181, 257, 958
BstC8I	GCNNGC	2 cut(s)	495, 519
BstDEI	CTNAG	7 cut(s)	65, 89, 116, 437, 513, 617, 666
BstF5I	GGATG	6 cut(s)	341, 379, 551, 793, 1086, 1302
BstKTI	GATC	7 cut(s)	151, 220, 226, 394, 443, 913, 1062
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 202, 257, 518, 523, 898, 958
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	2 cut(s)	145, 588
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	1038
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	4 cut(s)	35, 616, 638, 679
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	4 cut(s)	217, 223, 440, 1059
BstYI	RGATCY	4 cut(s)	217, 223, 440, 1059
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	6 cut(s)	341, 379, 551, 793, 1086, 1302
BtsI	GCAGTG	2 cut(s)	114, 676
BtsIMutI	CAGTG	3 cut(s)	114, 676, 839
Cac8I	GCNNGC	2 cut(s)	495, 519
CaiI	CAGNNNCTG	1 cut(s)	1175
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	4 cut(s)	170, 412, 658, 1172
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	9 cut(s)	142, 263, 395, 559, 566, 585, 671, 896, 1246
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	7 cut(s)	65, 89, 116, 437, 513, 617, 666
DpnI	GATC	7 cut(s)	150, 219, 225, 393, 442, 912, 1061
DpnII	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
Eam1104I	CTCTTC	1 cut(s)	1289
EarI	CTCTTC	1 cut(s)	1289
Eco130I	CCWWGG	1 cut(s)	783
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	170, 658, 1172
Eco57I	CTGAAG	1 cut(s)	1256
Eco81I	CCTNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	1172
EcoRII	CCWGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	2 cut(s)	489, 586
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	9 cut(s)	145, 266, 398, 562, 569, 588, 674, 899, 1249
FalI	AAGNNNNNCTT	4 cut(s)	767, 799, 836, 868
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	9 cut(s)	141, 262, 394, 558, 565, 584, 670, 895, 1245
FauNDI	CATATG	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	779
Fnu4HI	GCNGC	4 cut(s)	24, 627, 630, 693
FokI	GGATG	6 cut(s)	348, 386, 538, 800, 1093, 1309
Fsp4HI	GCNGC	4 cut(s)	24, 627, 630, 693
FspBI	CTAG	4 cut(s)	152, 966, 1023, 1311
GluI	GCNGC	4 cut(s)	24, 627, 630, 693
GsuI	CTGGAG	2 cut(s)	212, 527
HaeIII	GGCC	1 cut(s)	414
Hin1II	CATG	9 cut(s)	145, 266, 398, 562, 569, 588, 674, 899, 1249
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	3 cut(s)	74, 323, 816
HphI	GGTGA	2 cut(s)	992, 1030
Hpy166II	GTNNAC	2 cut(s)	137, 780
Hpy188I	TCNGA	4 cut(s)	82, 440, 1129, 1275
Hpy8I	GTNNAC	2 cut(s)	137, 780
HpyAV	CCTTC	5 cut(s)	565, 587, 803, 972, 986
HpyCH4III	ACNGT	1 cut(s)	931
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 202, 257, 518, 523, 898, 958
HpyF3I	CTNAG	7 cut(s)	65, 89, 116, 437, 513, 617, 666
Hsp92II	CATG	9 cut(s)	145, 266, 398, 562, 569, 588, 674, 899, 1249
Kzo9I	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
LmnI	GCTCC	1 cut(s)	1255
Lsp1109I	GCAGC	4 cut(s)	35, 616, 638, 679
LweI	GCATC	5 cut(s)	364, 496, 560, 778, 910
MaeI	CTAG	4 cut(s)	152, 966, 1023, 1311
MaeIII	GTNAC	4 cut(s)	931, 979, 1018, 1210
MalI	GATC	7 cut(s)	150, 219, 225, 393, 442, 912, 1061
MboI	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
MboII	GAAGA	5 cut(s)	584, 966, 1105, 1262, 1276
MflI	RGATCY	4 cut(s)	217, 223, 440, 1059
MhlI	GDGCHC	2 cut(s)	469, 499
MmeI	TCCRAC	3 cut(s)	193, 685, 1107
MnlI	CCTC	8 cut(s)	202, 422, 446, 502, 643, 949, 1158, 1312
Mph1103I	ATGCAT	2 cut(s)	489, 586
MseI	TTAA	7 cut(s)	281, 647, 710, 774, 843, 1028, 1289
MslI	CAYNNNNRTG	1 cut(s)	1232
MspA1I	CMGCKG	1 cut(s)	629
MspCI	CTTAAG	1 cut(s)	842
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	7 cut(s)	181, 202, 257, 518, 523, 898, 958
NdeI	CATATG	1 cut(s)	383
NdeII	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
NlaIII	CATG	9 cut(s)	145, 266, 398, 562, 569, 588, 674, 899, 1249
NlaIV	GGNNCC	1 cut(s)	960
NmuCI	GTSAC	1 cut(s)	1018
NsiI	ATGCAT	2 cut(s)	489, 586
NspI	RCATGY	2 cut(s)	145, 588
PagI	TCATGA	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	74, 323, 816
PkrI	GCNGC	4 cut(s)	25, 628, 631, 694
PpuMI	RGGWCCY	1 cut(s)	1172
PshBI	ATTAAT	1 cut(s)	710
Psp5II	RGGWCCY	1 cut(s)	1172
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	960
PspPI	GGNCC	4 cut(s)	170, 412, 658, 1172
PspPPI	RGGWCCY	1 cut(s)	1172
PstI	CTGCAG	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	1175
PsuI	RGATCY	4 cut(s)	217, 223, 440, 1059
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	1232
SaqAI	TTAA	7 cut(s)	281, 647, 710, 774, 843, 1028, 1289
SatI	GCNGC	4 cut(s)	24, 627, 630, 693
Sau3AI	GATC	7 cut(s)	148, 217, 223, 391, 440, 910, 1059
Sau96I	GGNCC	4 cut(s)	170, 412, 658, 1172
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	469, 499
SfaNI	GCATC	5 cut(s)	364, 496, 560, 778, 910
SfcI	CTRYAG	1 cut(s)	1038
SinI	GGWCC	3 cut(s)	170, 658, 1172
SmiMI	CAYNNNNRTG	1 cut(s)	1232
SmlI	CTYRAG	3 cut(s)	330, 715, 842
SmoI	CTYRAG	3 cut(s)	330, 715, 842
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	4 cut(s)	152, 966, 1023, 1311
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	1 cut(s)	931
TaqI	TCGA	1 cut(s)	241
TatI	WGTACW	1 cut(s)	849
TfiI	GAWTC	3 cut(s)	74, 323, 816
Tru1I	TTAA	7 cut(s)	281, 647, 710, 774, 843, 1028, 1289
Tru9I	TTAA	7 cut(s)	281, 647, 710, 774, 843, 1028, 1289
TscAI	CASTG	3 cut(s)	114, 683, 839
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	4 cut(s)	23, 626, 629, 692
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	6 cut(s)	547, 585, 687, 785, 927, 935
TspRI	CASTG	3 cut(s)	114, 683, 839
Vha464I	CTTAAG	1 cut(s)	842
VpaK11BI	GGWCC	3 cut(s)	170, 658, 1172
VspI	ATTAAT	1 cut(s)	710
XapI	RAATTY	1 cut(s)	638
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	2 cut(s)	145, 588
XmiI	GTMKAC	1 cut(s)	779
XspI	CTAG	4 cut(s)	152, 966, 1023, 1311
Zsp2I	ATGCAT	2 cut(s)	489, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.