Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003682

Physical Location & Seq

Genomic Coordinates Forward (+)

25756106 .. 25759554

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGACTACCAATCGGAGTCAAATCTCATCGTTTCAGGTATGCACTACATTGAATTTAAATTTTCAAGATGTCGGAAGTGCTTTTGGGAGTATCTTGTCTGGTATGCTTAAACTTTATCATAATTGCTTGAATGGTAAAGTTGGAGAAGAAAATTGGCCACCTGATGAGTGGATTGAGAAAATGGATGGGGATGCTAATAATTTGTTTGACAATAGGTCAACTAGAGAAATTAGACTTGATAATTTCCTAGTTGCTACTGGTTTGGCTTATGATACTGATTCAATTGATATGGCACCGCTCGAGATAAATGGCTACCTGAAAAATCTACTTGTTGTTATGTTTATCGGCAAGGATGGAAAGTATCTTGCTCTGGGAAGCAAGAATGGAGATATATGTGTGGTTAACGTTAAGAAAATGGAGCATGAATTGGTTGAGCTTCGACATCACATTTCATCTGAAGGTGTTGTGAACTTTCTTGAAGAGGTTGCTTTGACATGCATGGAAAAGTTACGAGATGAAATATTTTTATTCCCTGGTGGCTTTAGTTATGATAATCAAGCGGACAGAAATAGTAAAGGATTCCATAACAGAATCAGGTTGCATACTGTTTCAGAACTTGCTGAACATGTTAAGGATGAAAGTCATGCTTCGATGGACCTTCATATCAGAGTGGAATTGAAAATATGTCAAACCTGGGTTGAGTCACCTGTACCATTCCCATTGTCAATACTTGAATCTTTCAAGCATGCTGTAAAAGCTTGGTTGAGTTCAACTGCAAATGGTAAAGCTATGATGGAGTTGTATGTGGGGTTGTATACAAATATTGGATTCCATGATTTTGCACTAAATTCTCAGAGTCCAACACTTGGATTTGAGTTGTTTGCAAATATGAAGTTCATAAACGTCTTGTGCAAGAACATGCTTTGCAAGATTTTGAACCAAATGGATCCTAAGGACATCATTGCTTCGGGAGCTACCAGTCTAAGCCACATGCTACATGACAAGGCTACTAAATTTTCCCGTGAACTCAATCAAGCTAATGCATGTACACTATTGAGTAATTATGGTCATGGGAAGATGAAAAGATTAGTGCAAGAGAGTGAAGAGACAAATGGAAAATTTGATAATCTTGACGTCTTATCCCATGATCTTGGTGACAATGGCTTTGTTGCTCTTCATCTTATACTCTGTTTGTTAAATAATGGTGAATCAAAAACCATGGTAATCAATTGGCTATCAAAGGTCAAGACTCATGCTGGAAGTTCAACTTTGAATGTGGATAGAGTAAAAGTATCTCATCACTTGGAGGACAAATCTGATCTTCCTTCGTTTACAACGTCATTTTCTGGTTACGATCCTGGGGATCGTAACAAGGAAGATGATCTAGAGTTGGCGGAGGAACACTCTTCCTCGGAGACCGCCATTGACGATGGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

479

Amino Acids

53.61

Weight (kDa)

5.38

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12421 FvH4_3g20453 FvH4_3g20454
malus_domestica	MD16G1253500.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479611 RchiOBHm_Chr4g0393431 RchiOBHm_Chr4g0403131 RchiOBHm_Chr4g0403161 RchiOBHm_Chr4g0419441 RchiOBHm_Chr5g0007271 RchiOBHm_Chr5g0056401
rosa_multiflora	Rmu_sc0000577.1_g000014 Rmu_sc0001218.1_g000016 Rmu_sc0001787.1_g000002 Rmu_sc0001877.1_g000005 Rmu_sc0002396.1_g000007 Rmu_sc0002522.1_g000025 Rmu_sc0002699.1_g000023 Rmu_sc0002822.1_g000015 Rmu_sc0002822.1_g000017 Rmu_sc0003347.1_g000019 Rmu_sc0004174.1_g000005 Rmu_sc0004874.1_g000013 Rmu_sc0009422.1_g000002 Rmu_sc0017595.1_g000001 Rmu_sc0032285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033040 Rroxscaffold_2G00106480 Rroxscaffold_3G00267930 Rroxscaffold_4G00326640 Rroxscaffold_5G00382820 Rroxscaffold_6G00403290 Rroxscaffold_7G00191420
rosa_samantha	Rh2AG247000 Rh6CG057200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1137
AccB1I	GGYRCC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccBSI	CCGCTC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	815
AciI	CCGC	4 cut(s)	296, 560, 1394, 1419
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	4 cut(s)	941, 954, 1349, 1371
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	5 cut(s)	52, 58, 847, 1013, 1118
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	1134
AfaI	GTAC	2 cut(s)	711, 1048
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflIII	ACRYGT	1 cut(s)	625
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	3 cut(s)	532, 692, 1357
AluBI	AGCT	5 cut(s)	436, 758, 788, 974, 1037
AluI	AGCT	5 cut(s)	436, 758, 788, 974, 1037
Alw26I	GTCTC	2 cut(s)	1100, 1409
AlwI	GGATC	4 cut(s)	941, 954, 1349, 1371
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	155
ApoI	RAATTY	5 cut(s)	52, 58, 847, 1013, 1118
ArsI	GACNNNNNNTTYG	2 cut(s)	1148, 1180
AspS9I	GGNCC	1 cut(s)	655
AsuHPI	GGTGA	3 cut(s)	696, 1166, 1217
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	655
AxyI	CCTNAGG	1 cut(s)	951
BalI	TGGCCA	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	292
BccI	CCATC	5 cut(s)	179, 347, 646, 787, 1424
BciT130I	CCWGG	3 cut(s)	534, 694, 1359
BcoDI	GTCTC	2 cut(s)	1100, 1409
BfaI	CTAG	4 cut(s)	222, 248, 1385, 1438
Bme1390I	CCNGG	3 cut(s)	534, 694, 1359
Bme18I	GGWCC	1 cut(s)	655
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	655
BmiI	GGNNCC	2 cut(s)	294, 948
BmrFI	CCNGG	3 cut(s)	534, 694, 1359
BmsI	GCATC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	1388, 1420
BsaHI	GRCGYC	1 cut(s)	1134
BsaI	GGTCTC	1 cut(s)	1409
BsaJI	CCNNGG	5 cut(s)	532, 693, 1218, 1358, 1410
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	2 cut(s)	262, 978
Bse21I	CCTNAGG	1 cut(s)	951
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	3 cut(s)	534, 694, 1359
BseDI	CCNNGG	5 cut(s)	532, 693, 1218, 1358, 1410
BseGI	GGATG	4 cut(s)	190, 196, 358, 640
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	1 cut(s)	866
BseNI	ACTGG	2 cut(s)	262, 978
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	2 cut(s)	1100, 1409
BsnI	GGCC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	1409
BsoBI	CYCGRG	1 cut(s)	299
Bsp1407I	TGTACA	1 cut(s)	1046
Bsp143I	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
Bsp19I	CCATGG	1 cut(s)	1218
BspACI	CCGC	4 cut(s)	296, 560, 1394, 1419
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	865
BspLI	GGNNCC	2 cut(s)	294, 948
BspPI	GGATC	4 cut(s)	941, 954, 1349, 1371
BspQI	GCTCTTC	1 cut(s)	1179
BspT107I	GGYRCC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	1409
BsrBI	CCGCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	960
BsrGI	TGTACA	1 cut(s)	1046
BsrI	ACTGG	2 cut(s)	262, 978
BssECI	CCNNGG	5 cut(s)	532, 693, 1218, 1358, 1410
BssMI	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
BssNAI	GTATAC	1 cut(s)	816
BssNI	GRCGYC	1 cut(s)	1134
BssT1I	CCWWGG	1 cut(s)	1218
Bst1107I	GTATAC	1 cut(s)	816
Bst2UI	CCWGG	3 cut(s)	534, 694, 1359
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	4 cut(s)	474, 1098, 1179, 1411
BstACI	GRCGYC	1 cut(s)	1134
BstAUI	TGTACA	1 cut(s)	1046
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	3 cut(s)	852, 951, 983
BstDSI	CCRYGG	1 cut(s)	1218
BstF5I	GGATG	4 cut(s)	190, 196, 358, 640
BstKTI	GATC	6 cut(s)	949, 1150, 1321, 1357, 1366, 1384
BstMAI	GTCTC	2 cut(s)	1100, 1409
BstMBI	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
BstMWI	GCNNNNNNNGC	2 cut(s)	755, 971
BstNI	CCWGG	3 cut(s)	534, 694, 1359
BstNSI	RCATGY	6 cut(s)	498, 629, 749, 922, 994, 1047
BstSCI	CCNGG	3 cut(s)	532, 692, 1357
BstX2I	RGATCY	1 cut(s)	946
BstXI	CCANNNNNNTGG	1 cut(s)	1151
BstYI	RGATCY	1 cut(s)	946
BstZ17I	GTATAC	1 cut(s)	816
Bsu36I	CCTNAGG	1 cut(s)	951
BsuRI	GGCC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	1218
BtsCI	GGATG	4 cut(s)	190, 196, 358, 640
Cac8I	GCNNGC	1 cut(s)	747
Cfr13I	GGNCC	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	710, 1047
CviQI	GTAC	2 cut(s)	710, 1047
DdeI	CTNAG	3 cut(s)	852, 951, 983
DpnI	GATC	6 cut(s)	948, 1149, 1320, 1356, 1365, 1383
DpnII	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
DraI	TTTAAA	1 cut(s)	57
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	4 cut(s)	474, 1098, 1179, 1411
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EarI	CTCTTC	4 cut(s)	474, 1098, 1179, 1411
EciI	GGCGGA	1 cut(s)	1409
Eco130I	CCWWGG	1 cut(s)	1218
Eco31I	GGTCTC	1 cut(s)	1409
Eco47I	GGWCC	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	951
Eco88I	CYCGRG	1 cut(s)	299
EcoRII	CCWGG	3 cut(s)	532, 692, 1357
EcoT14I	CCWWGG	1 cut(s)	1218
EcoT22I	ATGCAT	2 cut(s)	500, 1045
ErhI	CCWWGG	1 cut(s)	1218
FalI	AAGNNNNNCTT	4 cut(s)	631, 663, 1252, 1284
FblI	GTMKAC	1 cut(s)	815
FokI	GGATG	4 cut(s)	197, 203, 365, 647
FspBI	CTAG	4 cut(s)	222, 248, 1385, 1438
HaeIII	GGCC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	1134
HincII	GTYRAC	2 cut(s)	219, 403
HindII	GTYRAC	2 cut(s)	219, 403
HindIII	AAGCTT	1 cut(s)	756
HpaI	GTTAAC	1 cut(s)	403
HphI	GGTGA	3 cut(s)	696, 1166, 1217
Hpy166II	GTNNAC	7 cut(s)	219, 403, 469, 816, 1025, 1049, 1332
Hpy188I	TCNGA	8 cut(s)	15, 74, 457, 613, 668, 855, 1318, 1414
Hpy188III	TCNNGA	7 cut(s)	65, 301, 476, 969, 1130, 1246, 1385
Hpy8I	GTNNAC	7 cut(s)	219, 403, 469, 816, 1025, 1049, 1332
HpyAV	CCTTC	3 cut(s)	452, 668, 1335
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	4 cut(s)	405, 903, 1134, 1337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	755, 971
HpyF3I	CTNAG	3 cut(s)	852, 951, 983
HpySE526I	ACGT	4 cut(s)	405, 903, 1134, 1337
Hsp92I	GRCGYC	1 cut(s)	1134
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
LguI	GCTCTTC	1 cut(s)	1179
LmnI	GCTCC	2 cut(s)	418, 971
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	4 cut(s)	222, 248, 1385, 1438
MaeII	ACGT	4 cut(s)	405, 903, 1134, 1337
MaeIII	GTNAC	5 cut(s)	507, 702, 1154, 1349, 1367
MalI	GATC	6 cut(s)	948, 1149, 1320, 1356, 1365, 1383
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
MboII	GAAGA	8 cut(s)	158, 491, 1087, 1115, 1166, 1313, 1388, 1398
MfeI	CAATTG	2 cut(s)	282, 1228
MflI	RGATCY	1 cut(s)	946
MlsI	TGGCCA	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	4 cut(s)	25, 710, 865, 1243
MmeI	TCCRAC	3 cut(s)	52, 121, 884
MnlI	CCTC	4 cut(s)	475, 1300, 1390, 1420
Mox20I	TGGCCA	1 cut(s)	157
Mph1103I	ATGCAT	2 cut(s)	500, 1045
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	6 cut(s)	56, 108, 402, 408, 630, 1196
Msp20I	TGGCCA	1 cut(s)	157
MspR9I	CCNGG	3 cut(s)	534, 694, 1359
MunI	CAATTG	2 cut(s)	282, 1228
MvaI	CCWGG	3 cut(s)	534, 694, 1359
MwoI	GCNNNNNNNGC	2 cut(s)	755, 971
NcoI	CCATGG	1 cut(s)	1218
NdeII	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
NlaIV	GGNNCC	2 cut(s)	294, 948
NmuCI	GTSAC	2 cut(s)	702, 1154
NsiI	ATGCAT	2 cut(s)	500, 1045
NspI	RCATGY	6 cut(s)	498, 629, 749, 922, 994, 1047
PaeI	GCATGC	1 cut(s)	749
PaeR7I	CTCGAG	1 cut(s)	299
PciI	ACATGT	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	1179
PcsI	WCGNNNNNNNCGW	1 cut(s)	1334
PfeI	GAWTC	6 cut(s)	278, 579, 591, 734, 828, 1208
PflMI	CCANNNNNTGG	1 cut(s)	866
PleI	GAGTC	4 cut(s)	24, 709, 864, 1243
PpsI	GAGTC	4 cut(s)	24, 709, 864, 1243
PscI	ACATGT	1 cut(s)	625
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	532, 692, 1357
PspGI	CCWGG	3 cut(s)	532, 692, 1357
PspN4I	GGNNCC	2 cut(s)	294, 948
PspPI	GGNCC	1 cut(s)	655
PsuI	RGATCY	1 cut(s)	946
RsaI	GTAC	2 cut(s)	711, 1048
RsaNI	GTAC	2 cut(s)	710, 1047
SapI	GCTCTTC	1 cut(s)	1179
SaqAI	TTAA	6 cut(s)	56, 108, 402, 408, 630, 1196
Sau3AI	GATC	6 cut(s)	946, 1147, 1318, 1354, 1363, 1381
Sau96I	GGNCC	1 cut(s)	655
SchI	GAGTC	4 cut(s)	25, 710, 865, 1243
ScrFI	CCNGG	3 cut(s)	534, 694, 1359
SfaNI	GCATC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	655
SlaI	CTCGAG	1 cut(s)	299
SmiI	ATTTAAAT	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	749
SsiI	CCGC	4 cut(s)	296, 560, 1394, 1419
SspI	AATATT	2 cut(s)	522, 823
SspMI	CTAG	4 cut(s)	222, 248, 1385, 1438
StyD4I	CCNGG	3 cut(s)	532, 692, 1357
StyI	CCWWGG	1 cut(s)	1218
SwaI	ATTTAAAT	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	4 cut(s)	408, 906, 1137, 1340
TaqI	TCGA	3 cut(s)	300, 439, 650
TatI	WGTACW	1 cut(s)	1046
TfiI	GAWTC	6 cut(s)	278, 579, 591, 734, 828, 1208
Tru1I	TTAA	6 cut(s)	56, 108, 402, 408, 630, 1196
Tru9I	TTAA	6 cut(s)	56, 108, 402, 408, 630, 1196
TseFI	GTSAC	2 cut(s)	702, 1154
Tsp45I	GTSAC	2 cut(s)	702, 1154
TspDTI	ATGAA	9 cut(s)	438, 441, 531, 650, 651, 886, 905, 1094, 1166
Van91I	CCANNNNNTGG	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	5 cut(s)	52, 58, 847, 1013, 1118
XbaI	TCTAGA	1 cut(s)	1384
XceI	RCATGY	6 cut(s)	498, 629, 749, 922, 994, 1047
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	815
XspI	CTAG	4 cut(s)	222, 248, 1385, 1438
ZraI	GACGTC	1 cut(s)	1135
Zsp2I	ATGCAT	2 cut(s)	500, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.