Rroxscaffold_1G00033040

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
47512425 .. 47513015
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033040.1

Sequence Viewer

Length: 426 bp
ATGGTTGCTTCGGGAGCTACCACTCAAGGTCACATGCTACATGCCAAGGTCATTGAATTTTTCTCTCAGCTCAATCAAGTTAATGCACGTACACCATTGAGTAATTATGGTAATGGAGAGATAAAAAGACTTGTGCAAGAGACCAATGAAAAATGTGCTGCAATTGCAATCATTCTAATCGAAAATGCAGACCAAGTATCAGAAGAAAATGAACAGCCTTTGCTTCTCAATGTCATTTTTCAGCTCAAGGCTCACTCACCAAGCTCAAGTAAGTATTCAACCTCACTTGGAAACCTCTCAACTGCCATAGAGTTTCTTAGCCACATTGTACTTGAAGAATGTGAATGGTTAGTTGTTAAGTCTGTAAAGAATTGCTATGATGATAAACCAGGAGAAGGGGCTCAGTTCACTAGAGTTATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.58

Weight (kDa)

5.32

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 2 cut(s) 91, 330
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 3 cut(s) 56, 279, 335
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 4 cut(s) 17, 70, 244, 264
AluI AGCT 4 cut(s) 17, 70, 244, 264
Alw26I GTCTC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 249
BanII GRGCYC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 411
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 390
BpuEI CTTGAG 3 cut(s) 9, 230, 250
BsaAI YACGTR 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 80, 416
BseXI GCAGC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 403
BspCNI CTCAG 2 cut(s) 79, 415
BspTNI GGTCTC 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 390
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 66, 317, 402
BstMAI GTCTC 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 14, 164
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 2 cut(s) 37, 44
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 90, 329
CviAII CATG 2 cut(s) 34, 41
CviJI RGCY 8 cut(s) 17, 70, 217, 244, 251, 264, 321, 401
CviKI_1 RGCY 8 cut(s) 17, 70, 217, 244, 251, 264, 321, 401
CviQI GTAC 2 cut(s) 90, 329
DdeI CTNAG 3 cut(s) 66, 317, 402
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 403
Eco31I GGTCTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 37, 44
FaiI YATR 6 cut(s) 35, 42, 108, 308, 378, 419
FatI CATG 2 cut(s) 33, 40
Fnu4HI GCNGC 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 411
GluI GCNGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 37, 44
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 92, 408
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 92, 408
HpyAV CCTTC 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 5 cut(s) 86, 136, 161, 167, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 164
HpyF3I CTNAG 3 cut(s) 66, 317, 402
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 2 cut(s) 37, 44
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 2 cut(s) 375, 402
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 29
MboII GAAGA 2 cut(s) 215, 347
MfeI CAATTG 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 5 cut(s) 56, 103, 162, 370, 421
MnlI CCTC 2 cut(s) 292, 305
MseI TTAA 3 cut(s) 81, 357, 424
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 14, 164
NlaIII CATG 2 cut(s) 37, 44
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 2 cut(s) 37, 44
PkrI GCNGC 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
RsaI GTAC 2 cut(s) 91, 330
RsaNI GTAC 2 cut(s) 90, 329
SaqAI TTAA 3 cut(s) 81, 357, 424
SatI GCNGC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 403
SetI ASST 9 cut(s) 19, 31, 51, 72, 91, 246, 266, 284, 297
SmlI CTYRAG 3 cut(s) 24, 245, 265
SmoI CTYRAG 3 cut(s) 24, 245, 265
Sse9I AATT 5 cut(s) 56, 103, 162, 370, 421
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 180
TasI AATT 5 cut(s) 56, 103, 162, 370, 421
TatI WGTACW 1 cut(s) 328
Tru1I TTAA 3 cut(s) 81, 357, 424
Tru9I TTAA 3 cut(s) 81, 357, 424
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 162, 225
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 37, 44
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.