Rmu_sc0001877.1_g000005

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001877.1
OG0003682
Physical Location & Seq
Forward (+)
44201 .. 48315
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001877.1_g000005.1.cds

Sequence Viewer

Length: 3969 bp
atggcatttctgggcttggatcctggggatcctaacaactggtatcaaagccctcgatccaatatgtgcggggtttggtttgctcccgatgatccctacctcccaccgccatggaaaggggtaattgatggcaatacaaggcgcttatactattggaaccttgagacgaacatcacccagtatgagaaaccagcttattgggttcagtcgtcgtgctctcccccttcgttttatcactcacctgtgacagcctcttccgattatacctatccttcgcaatacccaaacctccatccccaatatcagagacctgctggggttatggcggtgggatctctggcgggtgttgctcagcagcctctcaccaccactcctcgtgacccatacatccctacttaccattcacctcattctaactcaagtcccgggatctatccatcgattttacaaagccattcctatgacccatcaggtgtcggtgttcattctccgttcatcttcaccaaagccatgactacaccacctatttacccttctgctccttcacctcccgcttgtgagcaaccgcagtaccagatgaatacttccattccaacctttcagtcacccttagaccccacttttgtgccacaactccaattttcagaccccaaacctccgtcttcttttcgtccgatgagcgactgtgagaatcatctcggactagacgcgattctagattccacaccaactggtgaagcccactacactcccgcacaagcccatgatggttcatctttgcctccgtcaatcgactttgacggcgacagcgactctgaaaacaaagagagtattgctccgaatctgaaaaccaatgaagaatacgcttgccggtatgaggatctgaagaagcgaggcctggtagatgaacactcaggttctgactcgtcctcggaggatgacgacgtcgtcgtcgttttggcagccaattccaagaagaaaaatttggaattctttgaagctaacatcaaggtaaaagttctagaccctatcttgaataacaaagaggttgggttatctaaatctattgataatgaaattgaagacactagccttgtgaaagcggagaattgcaaagctatgaagttgggctttaagaggcataataagctagaagaaatttatatcgaagtccacatggatgtagatagtgatggagctagacagattctcaacagcctcataggtttgggtaatgggcattatcctgaatttaattcgaggtatgaatctcactttcccaaatccagtgagacaaagacatccaagggtagtgaattagctttgggtgggctttgggatgatagtggtggattgaacaccatgcagagcaaatttaagagtttctgcaagcctagtttggtgcctggagactttgcgctgattcatgacgaagaccacatactggaagctcatgagaaaagtgcaattgtgacgtctcactctcctcagctgtgccaaaagactggcgttaaggtacacatggttactgcagacttgcttatgctgcctcttcctctgcatttaaagcttattaatggtgataattttaatgttactgttttggagaatttcaagtgcacaagctatgatggtgatcttgttggtattgtggaggattcacaattttattatttcaagaaagataagagaagttttgcgaaagagcaggtgtgggctatatatgatgatgatgaaaggctgagaaattatggtttggttgaaatcaatccaggaatttcaatttcatttgtgactttgaaattgatggcatttaactcttgtacgagtgggaacatgtctatggataaagaaagggtccaggcatttgatgatggtaccattggtcatggtcatcaagtggagaattggctttccttgtctctgaaaccaacaagtacttctctgattagtcctcttgaaccctatattttaatggaagttggtggagctagcactattttaatggtagttggtgaaactagcactaattatgatcaggaagtggtgcctcctaattcaactctctattatgaggtcgagcttttatcttttgtcaaagacaaggaaccatgggacatgaatactttagagaaaatggaggttgctgtgtcattgctggagcaggatatcaaaacaggaccattagatcaatctggtttaaattttgtcagtgggattatttgtaaatccaaagctctaatgtttgagaggatgttgtttcatgctacaagtatttggatagctttacatgatccagaaaagtcagttaccaaagctgtagaggatttctgggattgttatggaaatgaatttgggactgactatttaggccttttcaaagcatgttcccatgtccattatacggtccgttatgctgctgcagaggtattagccgctgctttggacaaatctcttgattctatacaggaatccctttctactttacttctcatgtatgtctatgatgctagtttgtctgagagcaatgtcaatactggttggctcaaggttgacagtgagacggtgatgtgttctattgatgcacaatctgatgtgaagttatggccatggctcattctttgtttacagctttatcattgggaaacaaagaaatctattctcttctatagggaagcattcaaccaaataggtgaaatgagtcaaaccacattatctcataatgggcctacacttgctggtaaggataatctcataggaattgtagcaattattgactggtttcggtgtgctttattagaatttggcactgtggctactctaaatgcatggttaaatgataattttctttgtttacctcttgagaacaaaccggagaaagtgactttgtttcttgctgataagttggaaaaaatgggacataaaaggctacttacaaaatctgctgctgttatgtttgtcagcaaggatggaaaatatgttgctttgggaagcaaagatgtagatacatttgtggttgtaattaagaaaatgggacttgaatttattgagctccgaaatcacattttgtctcaaggggtagtgaacttgcttgaagaggtatctgaacttgcttttgtaaaactcaatcccggtgttattttattgaccggtttacaaggaattgggaagacaacagtattcactacattgaagatggcatttttgttatgccaggttgcactgacacgtatggaaaagttacaagatgaaagatttttattctccggtggctttagttatgataattatgcatgttttgatattgtcatggcaaaacaattaccaaatgcagcttgtcattcaatcttgtttaggctcatattggcagctcttagacaagaatcatcagaagccccaaggagatggcaatatgcactggttcttaactattttcagtattgtcaacacatgcttgatctagatatcccatcaacagttttgcaatttttgttgcttgatgagcaagaggtgccttctagttattcttctgttacaagtcaggaaggacagcaccatatggaaagagtggtgactaggttacatgttcctgcagattggaagaagtggcagatctatttgttgcttgtaggaatgtttttggcttttgcagttgcattttctatcttttttgagaagtctggtaatccttggaacttctctcttgaaaaatatcaaccagcaagacctgaattctgggaaattcaaaagttatgtttgcttcatagcttttgctattaccatatcaatgcaccaagacatgacttgagagctgatgtgatatcttcagatttttctcttcttaatgtggatgacctcgcagatcagtttgttgcactagttgatttcttgggtttgaaagaagtattgagcttgggtggtgacttgcatgatggagtagggacaatttggaagatcattcaggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

1322

Amino Acids

148.25

Weight (kDa)

5.11

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1699
AasI GACNNNNNNGTC 2 cut(s) 947, 950
AatII GACGTC 2 cut(s) 948, 1478
Acc36I ACCTGC 2 cut(s) 319, 1699
Acc65I GGTACC 1 cut(s) 1877
AccB1I GGYRCC 4 cut(s) 1402, 1877, 2047, 3511
AccB7I CCANNNNNTGG 1 cut(s) 1444
AccII CGCG 1 cut(s) 710
AciI CCGC 9 cut(s) 69, 107, 326, 341, 552, 566, 753, 1103, 2436
AcoI YGGCCR 1 cut(s) 2606
AcuI CTGAAG 2 cut(s) 905, 3810
AcyI GRCGYC 2 cut(s) 945, 1475
AfaI GTAC 5 cut(s) 572, 1518, 1825, 1879, 1939
AfiI CCNNNNNNNGG 4 cut(s) 116, 877, 1444, 2404
AflIII ACRYGT 3 cut(s) 1836, 3227, 3583
AgeI ACCGGT 1 cut(s) 3149
AhlI ACTAGT 1 cut(s) 3877
AjnI CCWGG 6 cut(s) 22, 897, 1405, 1771, 1860, 3213
AjuI GAANNNNNNNTTGG 4 cut(s) 968, 1000, 1924, 1956
AleI CACNNNNGTG 1 cut(s) 623
Alw21I GWGCWC 3 cut(s) 218, 1622, 3054
Alw26I GTCTC 8 cut(s) 158, 301, 1286, 1404, 1482, 1926, 2555, 3075
Alw44I GTGCAC 1 cut(s) 1618
AlwNI CAGNNNCTG 1 cut(s) 920
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 4 cut(s) 895, 2371, 2606, 2726
ApaLI GTGCAC 1 cut(s) 1618
ApeKI GCWGC 9 cut(s) 355, 962, 1546, 2417, 2420, 2438, 2945, 3332, 3368
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AseI ATTAAT 1 cut(s) 1575
AsiGI ACCGGT 1 cut(s) 3149
Asp718I GGTACC 1 cut(s) 1877
AspLEI GCGC 2 cut(s) 144, 1420
AspS9I GGNCC 4 cut(s) 1858, 2180, 2407, 2726
AsuC2I CCSGG 3 cut(s) 426, 427, 3132
AsuNHI GCTAGC 1 cut(s) 1991
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 3 cut(s) 1858, 2180, 2407
BaeGI GKGCMC 1 cut(s) 1622
BaeI ACNNNNGTAYC 4 cut(s) 554, 587, 2997, 3030
BalI TGGCCA 1 cut(s) 2608
BamHI GGATCC 2 cut(s) 19, 28
BanI GGYRCC 4 cut(s) 1402, 1877, 2047, 3511
BanII GRGCYC 1 cut(s) 3054
BarI GAAGNNNNNNTAC 2 cut(s) 1425, 1457
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 4 cut(s) 654, 1089, 1440, 3176
Bbv12I GWGCWC 3 cut(s) 218, 1622, 3054
BbvCI CCTCAGC 1 cut(s) 1488
BbvI GCAGC 9 cut(s) 367, 974, 1533, 2404, 2407, 2425, 2932, 3344, 3380
BceAI ACGGC 1 cut(s) 817
BciT130I CCWGG 6 cut(s) 24, 899, 1407, 1773, 1862, 3215
BclI TGATCA 1 cut(s) 2035
BcnI CCSGG 3 cut(s) 426, 427, 3132
BcoDI GTCTC 8 cut(s) 158, 301, 1286, 1404, 1482, 1926, 2555, 3075
BcuI ACTAGT 1 cut(s) 3877
BfmI CTRYAG 5 cut(s) 1530, 2319, 2421, 2668, 3591
BfoI RGCGCY 1 cut(s) 145
BfuAI ACCTGC 2 cut(s) 319, 1699
BglII AGATCT 1 cut(s) 3612
BlpI GCTNAGC 1 cut(s) 351
BmcAI AGTACT 1 cut(s) 1939
Bme1390I CCNGG 9 cut(s) 24, 426, 427, 899, 1407, 1773, 1862, 3132, 3215
Bme18I GGWCC 3 cut(s) 1858, 2180, 2407
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 4 cut(s) 1858, 2180, 2407, 2726
BmiI GGNNCC 9 cut(s) 21, 30, 158, 1404, 1859, 1879, 2049, 2109, 3513
BmrFI CCNGG 9 cut(s) 24, 426, 427, 899, 1407, 1773, 1862, 3132, 3215
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 2 cut(s) 2497, 2572
BmtI GCTAGC 1 cut(s) 1995
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 4 cut(s) 654, 1089, 1440, 3176
BplI GAGNNNNNCTC 2 cut(s) 820, 852
BpmI CTGGAG 2 cut(s) 1428, 2180
Bpu10I CCTNAGC 1 cut(s) 1488
Bpu1102I GCTNAGC 1 cut(s) 351
BpuEI CTTGAG 6 cut(s) 182, 403, 2531, 2882, 3057, 3826
BpuMI CCSGG 3 cut(s) 426, 427, 3132
Bsa29I ATCGAT 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 3230
BsaBI GATNNNNATC 1 cut(s) 1635
BsaHI GRCGYC 2 cut(s) 945, 1475
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 9 cut(s) 23, 110, 425, 930, 1305, 2111, 2609, 3398, 3689
BsaWI WCCGGW 3 cut(s) 2872, 3149, 3266
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 877, 1444, 2404
Bse118I RCCGGY 2 cut(s) 870, 3149
Bse1I ACTGG 9 cut(s) 44, 178, 736, 1287, 1449, 1510, 2542, 2783, 3423
Bse3DI GCAATG 2 cut(s) 2153, 2533
Bse8I GATNNNNATC 1 cut(s) 1635
BseBI CCWGG 6 cut(s) 24, 899, 1407, 1773, 1862, 3215
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 9 cut(s) 23, 110, 425, 930, 1305, 2111, 2609, 3398, 3689
BseGI GGATG 9 cut(s) 292, 387, 943, 1186, 1301, 1345, 2259, 2974, 3856
BseJI GATNNNNATC 1 cut(s) 1635
BseLI CCNNNNNNNGG 4 cut(s) 116, 877, 1444, 2404
BseMI GCAATG 2 cut(s) 2153, 2533
BseMII CTCAG 5 cut(s) 365, 927, 1502, 1733, 2511
BseNI ACTGG 9 cut(s) 44, 178, 736, 1287, 1449, 1510, 2542, 2783, 3423
BseRI GAGGAG 2 cut(s) 363, 1476
BseSI GKGCMC 1 cut(s) 1622
BseXI GCAGC 9 cut(s) 367, 974, 1533, 2404, 2407, 2425, 2932, 3344, 3380
BseYI CCCAGC 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 4 cut(s) 897, 2373, 2608, 2728
BshNI GGYRCC 4 cut(s) 1402, 1877, 2047, 3511
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 3 cut(s) 218, 1622, 3054
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 6 cut(s) 426, 871, 2873, 3132, 3150, 3267
BslFI GGGAC 6 cut(s) 408, 2129, 2371, 2931, 3048, 3955
BslI CCNNNNNNNGG 4 cut(s) 116, 877, 1444, 2404
BsmAI GTCTC 8 cut(s) 158, 301, 1286, 1404, 1482, 1926, 2555, 3075
BsmBI CGTCTC 3 cut(s) 158, 1482, 2555
BsmFI GGGAC 6 cut(s) 408, 2129, 2371, 2931, 3048, 3955
BsmI GAATGC 1 cut(s) 2678
BsnI GGCC 4 cut(s) 897, 2373, 2608, 2728
Bso31I GGTCTC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 218, 1622, 3054
Bsp1720I GCTNAGC 1 cut(s) 351
Bsp19I CCATGG 3 cut(s) 110, 2111, 2609
BspACI CCGC 9 cut(s) 69, 107, 326, 341, 552, 566, 753, 1103, 2436
BspANI GGCC 4 cut(s) 897, 2373, 2608, 2728
BspCNI CTCAG 5 cut(s) 364, 926, 1501, 1734, 2512
BspDI ATCGAT 1 cut(s) 440
BspFNI CGCG 1 cut(s) 710
BspHI TCATGA 2 cut(s) 1426, 1453
BspLI GGNNCC 9 cut(s) 21, 30, 158, 1404, 1859, 1879, 2049, 2109, 3513
BspMAI CTGCAG 3 cut(s) 1534, 2425, 3595
BspMI ACCTGC 2 cut(s) 319, 1699
BspOI GCTAGC 1 cut(s) 1995
BspT107I GGYRCC 4 cut(s) 1402, 1877, 2047, 3511
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 2153, 2533
BsrFI RCCGGY 2 cut(s) 870, 3149
BsrI ACTGG 9 cut(s) 44, 178, 736, 1287, 1449, 1510, 2542, 2783, 3423
BssAI RCCGGY 2 cut(s) 870, 3149
BssECI CCNNGG 9 cut(s) 23, 110, 425, 930, 1305, 2111, 2609, 3398, 3689
BssNI GRCGYC 2 cut(s) 945, 1475
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 6 cut(s) 110, 1305, 2111, 2609, 3398, 3689
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 6 cut(s) 24, 899, 1407, 1773, 1862, 3215
Bst4CI ACNGT 8 cut(s) 686, 1600, 2407, 2558, 2566, 2812, 3178, 3478
Bst6I CTCTTC 5 cut(s) 259, 1557, 2669, 3090, 3843
BstACI GRCGYC 2 cut(s) 945, 1475
BstAPI GCANNNNNTGC 1 cut(s) 3511
BstBAI YACGTR 1 cut(s) 3230
BstC8I GCNNGC 3 cut(s) 868, 1391, 1993
BstDEI CTNAG 7 cut(s) 351, 610, 913, 1488, 1742, 2520, 3374
BstDSI CCRYGG 3 cut(s) 110, 2111, 2609
BstF5I GGATG 9 cut(s) 292, 387, 943, 1186, 1301, 1345, 2259, 2974, 3856
BstFNI CGCG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 2 cut(s) 144, 1420
BstMAI GTCTC 8 cut(s) 158, 301, 1286, 1404, 1482, 1926, 2555, 3075
BstMWI GCNNNNNNNGC 6 cut(s) 347, 1147, 1546, 1567, 3502, 3511
BstNI CCWGG 6 cut(s) 24, 899, 1407, 1773, 1862, 3215
BstNSI RCATGY 5 cut(s) 1840, 2388, 3297, 3454, 3587
BstSCI CCNGG 9 cut(s) 22, 424, 425, 897, 1405, 1771, 1860, 3130, 3213
BstSFI CTRYAG 5 cut(s) 1530, 2319, 2421, 2668, 3591
BstSLI GKGCMC 1 cut(s) 1622
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 9 cut(s) 367, 974, 1533, 2404, 2407, 2425, 2932, 3344, 3380
BstV2I GAAGAC 4 cut(s) 654, 1089, 1440, 3176
BstX2I RGATCY 6 cut(s) 19, 28, 332, 429, 880, 3612
BstXI CCANNNNNNTGG 4 cut(s) 111, 198, 1505, 3405
BstYI RGATCY 6 cut(s) 19, 28, 332, 429, 880, 3612
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 4 cut(s) 897, 2373, 2608, 2728
BsuTUI ATCGAT 1 cut(s) 440
BtgI CCRYGG 3 cut(s) 110, 2111, 2609
BtsCI GGATG 9 cut(s) 292, 387, 943, 1186, 1301, 1345, 2259, 2974, 3856
BtsIMutI CAGTG 6 cut(s) 1294, 2218, 2563, 2808, 3221, 3416
BveI ACCTGC 2 cut(s) 319, 1699
Cac8I GCNNGC 3 cut(s) 868, 1391, 1993
CaiI CAGNNNCTG 1 cut(s) 920
CciI TCATGA 2 cut(s) 1426, 1453
CfoI GCGC 2 cut(s) 144, 1420
Cfr10I RCCGGY 2 cut(s) 870, 3149
Cfr13I GGNCC 4 cut(s) 1858, 2180, 2407, 2726
Cfr9I CCCGGG 1 cut(s) 425
ClaI ATCGAT 1 cut(s) 440
CpoI CGGWCCG 1 cut(s) 2407
CseI GACGC 1 cut(s) 716
Csp6I GTAC 5 cut(s) 571, 1517, 1824, 1878, 1938
CspAI ACCGGT 1 cut(s) 3149
CspI CGGWCCG 1 cut(s) 2407
CviQI GTAC 5 cut(s) 571, 1517, 1824, 1878, 1938
DdeI CTNAG 7 cut(s) 351, 610, 913, 1488, 1742, 2520, 3374
DraI TTTAAA 2 cut(s) 1566, 2202
DrdI GACNNNNNNGTC 2 cut(s) 947, 950
DseDI GACNNNNNNGTC 2 cut(s) 947, 950
EaeI YGGCCR 1 cut(s) 2606
Eam1104I CTCTTC 5 cut(s) 259, 1557, 2669, 3090, 3843
EarI CTCTTC 5 cut(s) 259, 1557, 2669, 3090, 3843
Ecl136II GAGCTC 1 cut(s) 3052
Eco130I CCWWGG 6 cut(s) 110, 1305, 2111, 2609, 3398, 3689
Eco147I AGGCCT 2 cut(s) 897, 2373
Eco24I GRGCYC 1 cut(s) 3054
Eco31I GGTCTC 1 cut(s) 301
Eco32I GATATC 3 cut(s) 2170, 3466, 3822
Eco47I GGWCC 3 cut(s) 1858, 2180, 2407
Eco53kI GAGCTC 1 cut(s) 3052
Eco57I CTGAAG 2 cut(s) 905, 3810
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 3052
EcoRI GAATTC 2 cut(s) 989, 3731
EcoRII CCWGG 6 cut(s) 22, 897, 1405, 1771, 1860, 3213
EcoRV GATATC 3 cut(s) 2170, 3466, 3822
EcoT14I CCWWGG 6 cut(s) 110, 1305, 2111, 2609, 3398, 3689
EcoT22I ATGCAT 2 cut(s) 2830, 3295
EcoT38I GRGCYC 1 cut(s) 3054
ErhI CCWWGG 6 cut(s) 110, 1305, 2111, 2609, 3398, 3689
Esp3I CGTCTC 3 cut(s) 158, 1482, 2555
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 6 cut(s) 408, 2129, 2371, 2931, 3048, 3955
FauI CCCGC 4 cut(s) 62, 334, 559, 760
FauNDI CATATG 1 cut(s) 3558
FbaI TGATCA 1 cut(s) 2035
FokI GGATG 9 cut(s) 279, 374, 950, 1193, 1288, 1352, 2266, 2981, 3863
FriOI GRGCYC 1 cut(s) 3054
GlaI GCGC 2 cut(s) 143, 1419
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 2 cut(s) 1428, 2180
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 4 cut(s) 897, 2373, 2608, 2728
HapII CCGG 6 cut(s) 426, 871, 2873, 3132, 3150, 3267
HgaI GACGC 1 cut(s) 716
HhaI GCGC 2 cut(s) 144, 1420
Hin1I GRCGYC 2 cut(s) 945, 1475
Hin6I GCGC 2 cut(s) 142, 1418
HinP1I GCGC 2 cut(s) 142, 1418
HincII GTYRAC 2 cut(s) 2554, 3446
HindII GTYRAC 2 cut(s) 2554, 3446
HindIII AAGCTT 1 cut(s) 1568
HpaII CCGG 6 cut(s) 426, 871, 2873, 3132, 3150, 3267
Hpy166II GTNNAC 9 cut(s) 1174, 1519, 1620, 2554, 2627, 2855, 3085, 3155, 3446
Hpy8I GTNNAC 9 cut(s) 1174, 1519, 1620, 2554, 2627, 2855, 3085, 3155, 3446
Hpy99I CGWCG 5 cut(s) 214, 947, 950, 953, 956
HpyAV CCTTC 6 cut(s) 234, 282, 543, 552, 3525, 3539
HpyCH4III ACNGT 8 cut(s) 686, 1600, 2407, 2558, 2566, 2812, 3178, 3478
HpyCH4IV ACGT 3 cut(s) 945, 1475, 3229
HpyF10VI GCNNNNNNNGC 6 cut(s) 347, 1147, 1546, 1567, 3502, 3511
HpyF3I CTNAG 7 cut(s) 351, 610, 913, 1488, 1742, 2520, 3374
HpySE526I ACGT 3 cut(s) 945, 1475, 3229
Hsp92I GRCGYC 2 cut(s) 945, 1475
HspAI GCGC 2 cut(s) 142, 1418
KpnI GGTACC 1 cut(s) 1881
Ksp22I TGATCA 1 cut(s) 2035
LmnI GCTCC 7 cut(s) 88, 544, 841, 1196, 1988, 2161, 3057
Lsp1109I GCAGC 9 cut(s) 367, 974, 1533, 2404, 2407, 2425, 2932, 3344, 3380
LweI GCATC 2 cut(s) 2497, 2572
MaeII ACGT 3 cut(s) 945, 1475, 3229
MfeI CAATTG 1 cut(s) 1467
MflI RGATCY 6 cut(s) 19, 28, 332, 429, 880, 3612
MhlI GDGCHC 3 cut(s) 218, 1622, 3054
MlsI TGGCCA 1 cut(s) 2608
MluNI TGGCCA 1 cut(s) 2608
MlyI GAGTC 3 cut(s) 806, 917, 2710
MmeI TCCRAC 2 cut(s) 617, 2886
Mox20I TGGCCA 1 cut(s) 2608
Mph1103I ATGCAT 2 cut(s) 2830, 3295
MscI TGGCCA 1 cut(s) 2608
MslI CAYNNNNRTG 6 cut(s) 109, 459, 623, 1179, 1841, 3786
Msp20I TGGCCA 1 cut(s) 2608
MspA1I CMGCKG 2 cut(s) 1492, 2438
MspI CCGG 6 cut(s) 426, 871, 2873, 3132, 3150, 3267
MspR9I CCNGG 9 cut(s) 24, 426, 427, 899, 1407, 1773, 1862, 3132, 3215
MunI CAATTG 1 cut(s) 1467
Mva1269I GAATGC 1 cut(s) 2678
MvaI CCWGG 6 cut(s) 24, 899, 1407, 1773, 1862, 3215
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 6 cut(s) 347, 1147, 1546, 1567, 3502, 3511
NciI CCSGG 3 cut(s) 426, 427, 3132
NcoI CCATGG 3 cut(s) 110, 2111, 2609
NdeI CATATG 1 cut(s) 3558
NheI GCTAGC 1 cut(s) 1991
NlaIV GGNNCC 9 cut(s) 21, 30, 158, 1404, 1859, 1879, 2049, 2109, 3513
NmuCI GTSAC 8 cut(s) 244, 377, 603, 1471, 1792, 2881, 3571, 3920
NsiI ATGCAT 2 cut(s) 2830, 3295
NspI RCATGY 5 cut(s) 1840, 2388, 3297, 3454, 3587
OliI CACNNNNGTG 1 cut(s) 623
PagI TCATGA 2 cut(s) 1426, 1453
PaqCI CACCTGC 1 cut(s) 1699
PceI AGGCCT 2 cut(s) 897, 2373
PciI ACATGT 2 cut(s) 1836, 3583
PcsI WCGNNNNNNNCGW 3 cut(s) 807, 948, 951
PctI GAATGC 1 cut(s) 2678
PflFI GACNNNGTC 2 cut(s) 944, 947
PflMI CCANNNNNTGG 1 cut(s) 1444
PfoI TCCNGGA 1 cut(s) 1771
PinAI ACCGGT 1 cut(s) 3149
PleI GAGTC 3 cut(s) 806, 917, 2709
PpsI GAGTC 3 cut(s) 806, 917, 2709
Ppu21I YACGTR 1 cut(s) 3230
PscI ACATGT 2 cut(s) 1836, 3583
PshBI ATTAAT 1 cut(s) 1575
Psp124BI GAGCTC 1 cut(s) 3054
Psp6I CCWGG 6 cut(s) 22, 897, 1405, 1771, 1860, 3213
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 6 cut(s) 22, 897, 1405, 1771, 1860, 3213
PspN4I GGNNCC 9 cut(s) 21, 30, 158, 1404, 1859, 1879, 2049, 2109, 3513
PspPI GGNCC 4 cut(s) 1858, 2180, 2407, 2726
PstI CTGCAG 3 cut(s) 1534, 2425, 3595
PstNI CAGNNNCTG 1 cut(s) 920
PsuI RGATCY 6 cut(s) 19, 28, 332, 429, 880, 3612
PsyI GACNNNGTC 2 cut(s) 944, 947
PvuII CAGCTG 1 cut(s) 1492
RsaI GTAC 5 cut(s) 572, 1518, 1825, 1879, 1939
RsaNI GTAC 5 cut(s) 571, 1517, 1824, 1878, 1938
RseI CAYNNNNRTG 6 cut(s) 109, 459, 623, 1179, 1841, 3786
Rsr2I CGGWCCG 1 cut(s) 2407
RsrII CGGWCCG 1 cut(s) 2407
SacI GAGCTC 1 cut(s) 3054
Sau96I GGNCC 4 cut(s) 1858, 2180, 2407, 2726
ScaI AGTACT 1 cut(s) 1939
SchI GAGTC 3 cut(s) 806, 917, 2710
ScrFI CCNGG 9 cut(s) 24, 426, 427, 899, 1407, 1773, 1862, 3132, 3215
SduI GDGCHC 3 cut(s) 218, 1622, 3054
SfaNI GCATC 2 cut(s) 2497, 2572
SfcI CTRYAG 5 cut(s) 1530, 2319, 2421, 2668, 3591
SinI GGWCC 3 cut(s) 1858, 2180, 2407
SmaI CCCGGG 1 cut(s) 427
SmiMI CAYNNNNRTG 6 cut(s) 109, 459, 623, 1179, 1841, 3786
SmlI CTYRAG 6 cut(s) 161, 418, 2546, 2861, 3072, 3805
SmoI CTYRAG 6 cut(s) 161, 418, 2546, 2861, 3072, 3805
SpeI ACTAGT 1 cut(s) 3877
SseBI AGGCCT 2 cut(s) 897, 2373
SsiI CCGC 9 cut(s) 69, 107, 326, 341, 552, 566, 753, 1103, 2436
SstI GAGCTC 1 cut(s) 3054
StuI AGGCCT 2 cut(s) 897, 2373
StyD4I CCNGG 9 cut(s) 22, 424, 425, 897, 1405, 1771, 1860, 3130, 3213
StyI CCWWGG 6 cut(s) 110, 1305, 2111, 2609, 3398, 3689
TaaI ACNGT 8 cut(s) 686, 1600, 2407, 2558, 2566, 2812, 3178, 3478
TaiI ACGT 3 cut(s) 948, 1478, 3232
TaqI TCGA 6 cut(s) 55, 440, 792, 1167, 1259, 2079
TatI WGTACW 1 cut(s) 1937
TauI GCSGC 1 cut(s) 2438
TscAI CASTG 6 cut(s) 1294, 2218, 2563, 2815, 3228, 3423
TseFI GTSAC 8 cut(s) 244, 377, 603, 1471, 1792, 2881, 3571, 3920
TseI GCWGC 9 cut(s) 355, 962, 1546, 2417, 2420, 2438, 2945, 3332, 3368
Tsp45I GTSAC 8 cut(s) 244, 377, 603, 1471, 1792, 2881, 3571, 3920
TspGWI ACGGA 4 cut(s) 480, 648, 774, 2399
TspMI CCCGGG 1 cut(s) 425
TspRI CASTG 6 cut(s) 1294, 2218, 2563, 2815, 3228, 3423
Tth111I GACNNNGTC 2 cut(s) 944, 947
Van91I CCANNNNNTGG 1 cut(s) 1444
VneI GTGCAC 1 cut(s) 1618
VpaK11BI GGWCC 3 cut(s) 1858, 2180, 2407
VspI ATTAAT 1 cut(s) 1575
XbaI TCTAGA 3 cut(s) 715, 1021, 3460
XceI RCATGY 5 cut(s) 1840, 2388, 3297, 3454, 3587
XmaI CCCGGG 1 cut(s) 425
ZraI GACGTC 2 cut(s) 946, 1476
ZrmI AGTACT 1 cut(s) 1939
Zsp2I ATGCAT 2 cut(s) 2830, 3295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.