Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Reverse (-)

15237137 .. 15240026

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAAGCCTCGGATCAACCAATTGGCGTCCTCCGCTGCGACCTCGGCCGGCTTCACTTACCGACGTCGGCTTCACTTACTGACGTCGGCTTCACCAGTTGGCGTTCTCCGCCGCGACCTCGACTTATCCCGAAACTCAGAGACGACTCGAGCCTTGTTGTCCTTGGTGGCTTTGAGGGTCCGTGCAGGAAGGACAAGCTTGGCGCCGTGCTAGATGATCACCGATTCAGGTACGATTGGATCTCCAAAGAGGTCTGGAACTCCGAGCAGTTCGTGATCTCCGACGACGAGCTCAAATTGATTGTGGCTCCAACAGTGAAGCCTATGGAGAATGAAACTGCTTTTAAGAAATTGAAAGATGGGTTGCTTTCAGCTACGTCTAGGTCTGTAAAGGAAAATAAAGACTCGAGTGGGTTTAGTTTCAAAGAAACTGAATCCACTAAGTATTACTGTGGGTGGAGACTTGGAGCATCTGGGGACCTTAAACAATTGTCGACCCTCTTACTGCCCTCAGTAGGACCTCCTACTGCCCCCAATACAACCCCCGACGAATCCCCTACTGCCCTCAATAAACATTCGGTCGCCGGAGTCCGGTCAACGTCATCGGATCCCGGTCAACGATCGCTGGAGTCACGGTCAACGATCATCGGAAGAAGTTTTGGAAACACCACCGAGTCCATCTGCAAGGCCAATGGGAATAAAGGCTTCAATATAAGAAAAGGAAAGAAGAAGAAAGAGAAAGATGACCGTATAGCAATTGCAATAGAAAGTCTTGCTCGATCCACTGCTGCTACTGTTGAGCTAATTAGGAAAAGGGATGAGGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

277

Amino Acids

30.33

Weight (kDa)

9.36

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	68, 87
AccB1I	GGYRCC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	494
AccII	CGCG	1 cut(s)	115
AciI	CCGC	3 cut(s)	34, 110, 113
AclWI	GGATC	5 cut(s)	21, 248, 602, 615, 774
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	4 cut(s)	27, 65, 84, 204
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	515, 591
AgsI	TTSAA	3 cut(s)	355, 424, 709
AluBI	AGCT	4 cut(s)	199, 292, 374, 802
AluI	AGCT	4 cut(s)	199, 292, 374, 802
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	135, 454
AlwI	GGATC	5 cut(s)	21, 248, 602, 615, 774
Ama87I	CYCGRG	2 cut(s)	148, 406
AoxI	GGCC	2 cut(s)	46, 687
ApeKI	GCWGC	2 cut(s)	36, 788
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	3 cut(s)	179, 478, 518
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	2 cut(s)	85, 212
AvaI	CYCGRG	2 cut(s)	148, 406
AvaII	GGWCC	3 cut(s)	179, 478, 518
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	23, 775
BccI	CCATC	2 cut(s)	353, 686
BceAI	ACGGC	1 cut(s)	191
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	2 cut(s)	135, 454
BfaI	CTAG	2 cut(s)	212, 381
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	3 cut(s)	37, 113, 789
BlsI	GCNGC	3 cut(s)	38, 114, 790
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	3 cut(s)	179, 478, 518
BmeT110I	CYCGRG	2 cut(s)	148, 406
BmgT120I	GGNCC	3 cut(s)	179, 478, 518
BmiI	GGNNCC	5 cut(s)	180, 205, 309, 479, 609
BmrFI	CCNGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	612
BsaHI	GRCGYC	4 cut(s)	27, 65, 84, 204
BsaJI	CCNNGG	3 cut(s)	9, 43, 163
BsaWI	WCCGGW	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 591
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	9, 43, 163
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	2 cut(s)	515, 591
BseMII	CTCAG	2 cut(s)	151, 525
BseNI	ACTGG	1 cut(s)	96
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	23, 775
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	115
Bsh1285I	CGRYCG	3 cut(s)	49, 582, 623
BshFI	GGCC	2 cut(s)	48, 689
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	3 cut(s)	49, 582, 623
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	2 cut(s)	148, 406
BsiSI	CCGG	4 cut(s)	49, 585, 592, 612
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	515, 591
BsmAI	GTCTC	2 cut(s)	135, 454
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	48, 689
BsoBI	CYCGRG	2 cut(s)	148, 406
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
BspACI	CCGC	3 cut(s)	34, 110, 113
BspANI	GGCC	2 cut(s)	48, 689
BspCNI	CTCAG	2 cut(s)	150, 524
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	5 cut(s)	180, 205, 309, 479, 609
BspPI	GGATC	5 cut(s)	21, 248, 602, 615, 774
BspT107I	GGYRCC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	9, 43, 163
BssMI	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
BssNI	GRCGYC	4 cut(s)	27, 65, 84, 204
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	5 cut(s)	316, 452, 636, 749, 796
BstACI	GRCGYC	4 cut(s)	27, 65, 84, 204
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	137, 441, 511
BstF5I	GGATG	1 cut(s)	823
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	8 cut(s)	16, 220, 243, 279, 610, 623, 645, 782
BstMAI	GTCTC	2 cut(s)	135, 454
BstMBI	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
BstMCI	CGRYCG	3 cut(s)	49, 582, 623
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 45, 109
BstSCI	CCNGG	1 cut(s)	610
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	23, 775
BstX2I	RGATCY	2 cut(s)	240, 607
BstYI	RGATCY	2 cut(s)	240, 607
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	48, 689
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	321, 783
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	179, 478, 518
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	232
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	137, 441, 511
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	8 cut(s)	15, 219, 242, 278, 609, 622, 644, 781
DpnII	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	3 cut(s)	179, 478, 518
Eco52I	CGGCCG	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	292
Eco88I	CYCGRG	2 cut(s)	148, 406
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	2 cut(s)	478, 518
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	135
FaiI	YATR	3 cut(s)	326, 713, 752
FaqI	GGGAC	1 cut(s)	491
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	3 cut(s)	37, 113, 789
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	37, 113, 789
FspBI	CTAG	2 cut(s)	212, 381
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	3 cut(s)	37, 113, 789
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	48, 689
HapII	CCGG	4 cut(s)	49, 585, 592, 612
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	4 cut(s)	27, 65, 84, 204
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	4 cut(s)	495, 597, 617, 639
HindII	GTYRAC	4 cut(s)	495, 597, 617, 639
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	9 cut(s)	146, 225, 404, 434, 551, 588, 629, 674, 824
HpaII	CCGG	4 cut(s)	49, 585, 592, 612
HphI	GGTGA	2 cut(s)	85, 212
Hpy166II	GTNNAC	4 cut(s)	495, 597, 617, 639
Hpy188I	TCNGA	6 cut(s)	13, 140, 265, 283, 607, 650
Hpy188III	TCNNGA	3 cut(s)	130, 256, 274
Hpy8I	GTNNAC	4 cut(s)	495, 597, 617, 639
Hpy99I	CGWCG	6 cut(s)	67, 70, 89, 287, 290, 551
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	5 cut(s)	316, 452, 636, 749, 796
HpyCH4IV	ACGT	4 cut(s)	65, 84, 377, 599
HpyCH4V	TGCA	3 cut(s)	186, 684, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 45, 109
HpyF3I	CTNAG	3 cut(s)	137, 441, 511
HpySE526I	ACGT	4 cut(s)	65, 84, 377, 599
Hsp92I	GRCGYC	4 cut(s)	27, 65, 84, 204
HspAI	GCGC	1 cut(s)	204
KasI	GGCGCC	1 cut(s)	203
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
LmnI	GCTCC	2 cut(s)	313, 467
Lsp1109I	GCAGC	2 cut(s)	23, 775
LweI	GCATC	1 cut(s)	479
MaeI	CTAG	2 cut(s)	212, 381
MaeII	ACGT	4 cut(s)	65, 84, 377, 599
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	8 cut(s)	15, 219, 242, 278, 609, 622, 644, 781
MboI	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
MboII	GAAGA	3 cut(s)	663, 739, 742
MfeI	CAATTG	3 cut(s)	21, 488, 756
MflI	RGATCY	2 cut(s)	240, 607
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	6 cut(s)	21, 296, 350, 488, 756, 804
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	5 cut(s)	140, 398, 597, 638, 683
MmeI	TCCRAC	2 cut(s)	306, 335
MroNI	GCCGGC	1 cut(s)	48
MseI	TTAA	2 cut(s)	345, 483
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	4 cut(s)	49, 585, 592, 612
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	3 cut(s)	21, 488, 756
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	33, 45, 109
NaeI	GCCGGC	1 cut(s)	50
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	612
NdeII	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
NgoMIV	GCCGGC	1 cut(s)	48
NlaIV	GGNNCC	5 cut(s)	180, 205, 309, 479, 609
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	630
PaeR7I	CTCGAG	2 cut(s)	148, 406
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	225, 434, 551, 824
PkrI	GCNGC	3 cut(s)	38, 114, 790
Ple19I	CGATCG	1 cut(s)	623
PleI	GAGTC	5 cut(s)	140, 398, 596, 637, 682
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	5 cut(s)	140, 398, 596, 637, 682
PpuMI	RGGWCCY	2 cut(s)	478, 518
Psp124BI	GAGCTC	1 cut(s)	294
Psp5II	RGGWCCY	2 cut(s)	478, 518
PspN4I	GGNNCC	5 cut(s)	180, 205, 309, 479, 609
PspPI	GGNCC	3 cut(s)	179, 478, 518
PspPPI	RGGWCCY	2 cut(s)	478, 518
PspXI	VCTCGAGB	2 cut(s)	148, 406
PsuI	RGATCY	2 cut(s)	240, 607
PvuI	CGATCG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	493
SaqAI	TTAA	2 cut(s)	345, 483
SatI	GCNGC	3 cut(s)	37, 113, 789
Sau3AI	GATC	8 cut(s)	13, 217, 240, 276, 607, 620, 642, 779
Sau96I	GGNCC	3 cut(s)	179, 478, 518
SchI	GAGTC	5 cut(s)	140, 398, 597, 638, 683
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	479
SfoI	GGCGCC	1 cut(s)	205
Sfr274I	CTCGAG	2 cut(s)	148, 406
SinI	GGWCC	3 cut(s)	179, 478, 518
SlaI	CTCGAG	2 cut(s)	148, 406
SmlI	CTYRAG	2 cut(s)	148, 406
SmoI	CTYRAG	2 cut(s)	148, 406
Sse9I	AATT	6 cut(s)	21, 296, 350, 488, 756, 804
SsiI	CCGC	3 cut(s)	34, 110, 113
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	212, 381
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	5 cut(s)	316, 452, 636, 749, 796
TaiI	ACGT	4 cut(s)	68, 87, 380, 602
TaqI	TCGA	5 cut(s)	121, 149, 407, 494, 778
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	6 cut(s)	21, 296, 350, 488, 756, 804
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	4 cut(s)	225, 434, 551, 824
Tru1I	TTAA	2 cut(s)	345, 483
Tru9I	TTAA	2 cut(s)	345, 483
TscAI	CASTG	2 cut(s)	321, 790
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	2 cut(s)	36, 788
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	2 cut(s)	17, 348
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	321, 790
VpaK11BI	GGWCC	3 cut(s)	179, 478, 518
XhoI	CTCGAG	2 cut(s)	148, 406
XmiI	GTMKAC	1 cut(s)	494
XspI	CTAG	2 cut(s)	212, 381
ZraI	GACGTC	2 cut(s)	66, 85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.