MD04G1016000.v1.1

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
1729075 .. 1730406
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1016000.v1.1.491

Sequence Viewer

Length: 1332 bp
ATGACCGATGCCGAGCTCAGAGACATGGTTAGCAAGACGCTTACTTGCCGTATTGACAAGAGGAAGAATTGCGGTGAAAAAATGGACCAATTTCTTCAAACATGTTTCTATCATTCTGGTCAGTATGATTCGCAGGATCATTTCGCAGAGCTGGACAAGAAGCTGAAGGAACATGAGGTGGGAAGAGTTCCTAATCGCCTGTTCTATCTGTCTGTCCCTCCAAACATATTCATTGACGCTGTTCGCTGTGCTAGCTTGTCAGCCTCATCTGGTAATGGCTGGACTAGGGTTATTGTGGAGAAACCCTTTGGCCGAGATTCAGAGTCATCTGCTGCTTTGACCAAGGCCCTCAAGCAGTACCTAGAAGAGGACCAAATTTTCAGGATAGACCACTATCTGGGCAAGGAGCTTGTGGAAAACCTATCAGTTCTCCGCTTCTCCAACCTTATTTTTGAGCCCTTGTGGTCAAGGCAGTATATAAGAAATGTACAGTTAATATTCTCTGAAGATTTTGGCACTGAAGGACGTGGAGGGTATTTTGACAACTACGGGATAATAAGAGATATAATGCAGAATCACTTGCTTCAGATACTGGCACTCTTTGCAATGGAAACCCCTGTCAGTTTGGATGCAGAAGATATTAGAAACGAGAAGGTTAAAGTTTTACGTTCTATGAGGCCACTACAACTTGAAAATGTGGTCACAGGGCAATACAAGAGTCATGTTAGAGGTGGTATTACTTACCCAGCATACACTGATGACAAGACGGTACCCAAAGACAGCTTGACTCCAACATTTGCTGCAGCTGCTCTCTTCATAGACAACGCAAGATGGGATGGGGTGCCTTTCTTAATGAAGGCTGGGAAAGCATTACATAATAAGAGGGCTGAGATAAGGGTACAGTTTCGGCATGTACCTGGAAATTTGTATCGAAATATTGGAACGGAGCTTGATCACGCAACAAATGAGCTTGTTATCCGTGTACAGCCTGATGAAGCTATTGTCCTGAAGATCAATAACAAAGTCCCTGGTTTGGGAATGAGGTTGGACAGGAGCAATCTAAATCTTCACTACGCAGCCAGATATTCAAAGGAGATTCCGGATGCTTATGAGAGGCTTCTGCTGGATGCTATTGAAGGGGAAAGGAGGCTGTTTATCCGGAGTGATGAACTTGATGCAGCTTGGTCTCTCTTCACACCCTTGTTGAAAGAGATAGAAGAGAAGAAGGTTATTCCCGAATACTATCCTTACGGAAGCAGAGGTCCTGTCGGGGCACACTATCTTGCAGCAAGATACAAAGTCCGGTGGGGTGATGTTGGCTTGGAGCCGTGA

Protein Analysis

444

Amino Acids

50.81

Weight (kDa)

6.85

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G6PD_N PF00479 1 - 140 2.6e-38 Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C PF02781 143 - 436 2.2e-114 Glucose-6-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 769
AccB1I GGYRCC 2 cut(s) 769, 841
AccB7I CCANNNNNTGG 1 cut(s) 397
AccIII TCCGGA 2 cut(s) 1099, 1158
AciI CCGC 2 cut(s) 72, 433
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 2 cut(s) 375, 922
AcuI CTGAAG 5 cut(s) 185, 525, 540, 569, 1028
AfaI GTAC 6 cut(s) 359, 489, 771, 900, 915, 984
AfiI CCNNNNNNNGG 4 cut(s) 367, 397, 1033, 1034
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 5 cut(s) 98, 692, 1089, 1136, 1207
AjiI CACGTC 1 cut(s) 527
AjnI CCWGG 2 cut(s) 916, 1027
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 15, 1191
AlwI GGATC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 592
Aor13HI TCCGGA 2 cut(s) 1099, 1158
AoxI GGCC 3 cut(s) 310, 345, 677
ApeKI GCWGC 7 cut(s) 332, 800, 803, 806, 1076, 1178, 1286
ApoI RAATTY 2 cut(s) 375, 922
Asp718I GGTACC 1 cut(s) 769
AspS9I GGNCC 4 cut(s) 85, 346, 370, 1262
AsuHPI GGTGA 2 cut(s) 86, 1322
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 3 cut(s) 85, 370, 1262
BaeGI GKGCMC 1 cut(s) 1276
BanI GGYRCC 2 cut(s) 769, 841
BanII GRGCYC 2 cut(s) 18, 459
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 7 cut(s) 319, 787, 793, 815, 1088, 1190, 1298
BccI CCATC 2 cut(s) 825, 830
BceAI ACGGC 2 cut(s) 33, 1312
BciT130I CCWGG 2 cut(s) 918, 1029
BclI TGATCA 1 cut(s) 952
BcoDI GTCTC 2 cut(s) 15, 1191
BfaI CTAG 3 cut(s) 252, 285, 362
BfmI CTRYAG 1 cut(s) 801
BisI GCNGC 7 cut(s) 333, 801, 804, 807, 1077, 1179, 1287
BlsI GCNGC 7 cut(s) 334, 802, 805, 808, 1078, 1180, 1288
Bme1390I CCNGG 2 cut(s) 918, 1029
Bme18I GGWCC 3 cut(s) 85, 370, 1262
BmgBI CACGTC 1 cut(s) 527
BmgT120I GGNCC 4 cut(s) 85, 346, 370, 1262
BmiI GGNNCC 3 cut(s) 771, 843, 1326
BmrFI CCNGG 2 cut(s) 918, 1029
BmsI GCATC 4 cut(s) 619, 1093, 1117, 1165
BmtI GCTAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 1191
BsaJI CCNNGG 2 cut(s) 342, 1027
BsaWI WCCGGW 3 cut(s) 1099, 1158, 1302
Bsc4I CCNNNNNNNGG 4 cut(s) 367, 397, 1033, 1034
Bse1I ACTGG 1 cut(s) 597
Bse3DI GCAATG 1 cut(s) 612
BseAI TCCGGA 2 cut(s) 1099, 1158
BseBI CCWGG 2 cut(s) 918, 1029
BseDI CCNNGG 2 cut(s) 342, 1027
BseGI GGATG 4 cut(s) 634, 841, 1108, 1132
BseLI CCNNNNNNNGG 4 cut(s) 367, 397, 1033, 1034
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 31, 879
BseNI ACTGG 1 cut(s) 597
BseSI GKGCMC 1 cut(s) 1276
BseXI GCAGC 7 cut(s) 319, 787, 793, 815, 1088, 1190, 1298
BseYI CCCAGC 2 cut(s) 745, 860
BshFI GGCC 3 cut(s) 312, 347, 679
BshNI GGYRCC 2 cut(s) 769, 841
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 3 cut(s) 1100, 1159, 1303
BslFI GGGAC 2 cut(s) 200, 1010
BslI CCNNNNNNNGG 4 cut(s) 367, 397, 1033, 1034
BsmAI GTCTC 2 cut(s) 15, 1191
BsmFI GGGAC 2 cut(s) 200, 1010
BsnI GGCC 3 cut(s) 312, 347, 679
Bso31I GGTCTC 1 cut(s) 1191
Bsp1286I GDGCHC 3 cut(s) 18, 459, 1276
Bsp13I TCCGGA 2 cut(s) 1099, 1158
Bsp1407I TGTACA 2 cut(s) 487, 982
Bsp143I GATC 3 cut(s) 136, 952, 1011
BspACI CCGC 2 cut(s) 72, 433
BspANI GGCC 3 cut(s) 312, 347, 679
BspCNI CTCAG 2 cut(s) 30, 880
BspEI TCCGGA 2 cut(s) 1099, 1158
BspLI GGNNCC 3 cut(s) 771, 843, 1326
BspMAI CTGCAG 1 cut(s) 805
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 769, 841
BspTNI GGTCTC 1 cut(s) 1191
BsrDI GCAATG 1 cut(s) 612
BsrGI TGTACA 2 cut(s) 487, 982
BsrI ACTGG 1 cut(s) 597
BssECI CCNNGG 2 cut(s) 342, 1027
BssMI GATC 3 cut(s) 136, 952, 1011
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 918, 1029
Bst4CI ACNGT 3 cut(s) 492, 769, 903
Bst6I CTCTTC 5 cut(s) 178, 360, 818, 1196, 1212
BstAPI GCANNNNNTGC 1 cut(s) 602
BstAUI TGTACA 2 cut(s) 487, 982
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 17, 888
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 4 cut(s) 634, 841, 1108, 1132
BstKTI GATC 3 cut(s) 139, 955, 1014
BstMAI GTCTC 2 cut(s) 15, 1191
BstMBI GATC 3 cut(s) 136, 952, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 252, 602, 806, 866
BstNI CCWGG 2 cut(s) 918, 1029
BstNSI RCATGY 2 cut(s) 105, 914
BstSCI CCNGG 2 cut(s) 916, 1027
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 1276
BstV1I GCAGC 7 cut(s) 319, 787, 793, 815, 1088, 1190, 1298
BsuRI GGCC 3 cut(s) 312, 347, 679
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 4 cut(s) 634, 841, 1108, 1132
BtsIMutI CAGTG 2 cut(s) 516, 753
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 592
Cfr13I GGNCC 4 cut(s) 85, 346, 370, 1262
CseI GACGC 2 cut(s) 46, 245
Csp6I GTAC 6 cut(s) 358, 488, 770, 899, 914, 983
CviAII CATG 5 cut(s) 25, 102, 173, 722, 911
CviQI GTAC 6 cut(s) 358, 488, 770, 899, 914, 983
DdeI CTNAG 2 cut(s) 17, 888
DpnI GATC 3 cut(s) 138, 954, 1013
DpnII GATC 3 cut(s) 136, 952, 1011
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 5 cut(s) 178, 360, 818, 1196, 1212
EarI CTCTTC 5 cut(s) 178, 360, 818, 1196, 1212
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 2 cut(s) 18, 459
Eco31I GGTCTC 1 cut(s) 1191
Eco47I GGWCC 3 cut(s) 85, 370, 1262
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 5 cut(s) 185, 525, 540, 569, 1028
EcoICRI GAGCTC 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO109I RGGNCCY 2 cut(s) 346, 1262
EcoRII CCWGG 2 cut(s) 916, 1027
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 2 cut(s) 18, 459
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 5 cut(s) 28, 105, 176, 725, 914
FaqI GGGAC 2 cut(s) 200, 1010
FatI CATG 5 cut(s) 24, 101, 172, 721, 910
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 7 cut(s) 333, 801, 804, 807, 1077, 1179, 1287
FokI GGATG 4 cut(s) 641, 848, 1115, 1139
FriOI GRGCYC 2 cut(s) 18, 459
Fsp4HI GCNGC 7 cut(s) 333, 801, 804, 807, 1077, 1179, 1287
FspBI CTAG 3 cut(s) 252, 285, 362
GluI GCNGC 7 cut(s) 333, 801, 804, 807, 1077, 1179, 1287
GsaI CCCAGC 2 cut(s) 749, 864
HaeIII GGCC 3 cut(s) 312, 347, 679
HapII CCGG 3 cut(s) 1100, 1159, 1303
HgaI GACGC 2 cut(s) 46, 245
Hin1II CATG 5 cut(s) 28, 105, 176, 725, 914
HinfI GANTC 7 cut(s) 128, 317, 323, 574, 718, 787, 1096
HpaII CCGG 3 cut(s) 1100, 1159, 1303
HphI GGTGA 2 cut(s) 86, 1322
Hpy166II GTNNAC 1 cut(s) 983
Hpy188I TCNGA 4 cut(s) 20, 322, 505, 588
Hpy188III TCNNGA 5 cut(s) 382, 1006, 1100, 1159, 1235
Hpy8I GTNNAC 1 cut(s) 983
HpyAV CCTTC 6 cut(s) 160, 515, 646, 850, 1130, 1219
HpyCH4III ACNGT 3 cut(s) 492, 769, 903
HpyCH4IV ACGT 2 cut(s) 526, 667
HpyCH4V TGCA 6 cut(s) 571, 605, 632, 803, 1178, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 602, 806, 866
HpyF3I CTNAG 2 cut(s) 17, 888
HpySE526I ACGT 2 cut(s) 526, 667
Hsp92II CATG 5 cut(s) 28, 105, 176, 725, 914
Kpn2I TCCGGA 2 cut(s) 1099, 1158
KpnI GGTACC 1 cut(s) 773
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 3 cut(s) 136, 952, 1011
LmnI GCTCC 4 cut(s) 406, 946, 1053, 1324
Lsp1109I GCAGC 7 cut(s) 319, 787, 793, 815, 1088, 1190, 1298
LweI GCATC 4 cut(s) 619, 1093, 1117, 1165
MaeI CTAG 3 cut(s) 252, 285, 362
MaeII ACGT 2 cut(s) 526, 667
MaeIII GTNAC 1 cut(s) 700
MalI GATC 3 cut(s) 138, 954, 1013
MboI GATC 3 cut(s) 136, 952, 1011
MhlI GDGCHC 3 cut(s) 18, 459, 1276
MluCI AATT 4 cut(s) 67, 89, 375, 922
MlyI GAGTC 3 cut(s) 332, 727, 781
MmeI TCCRAC 3 cut(s) 465, 815, 1026
MroI TCCGGA 2 cut(s) 1099, 1158
MseI TTAA 3 cut(s) 494, 657, 851
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 3 cut(s) 1100, 1159, 1303
MspR9I CCNGG 2 cut(s) 918, 1029
MvaI CCWGG 2 cut(s) 918, 1029
MwoI GCNNNNNNNGC 4 cut(s) 252, 602, 806, 866
NdeII GATC 3 cut(s) 136, 952, 1011
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 28, 105, 176, 725, 914
NlaIV GGNNCC 3 cut(s) 771, 843, 1326
NmeAIII GCCGAG 2 cut(s) 37, 338
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 2 cut(s) 105, 914
PciI ACATGT 1 cut(s) 101
PfeI GAWTC 4 cut(s) 128, 317, 574, 1096
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 7 cut(s) 334, 802, 805, 808, 1078, 1180, 1288
PleI GAGTC 3 cut(s) 331, 726, 781
PpsI GAGTC 3 cut(s) 331, 726, 781
PpuMI RGGWCCY 1 cut(s) 1262
PscI ACATGT 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 1262
Psp6I CCWGG 2 cut(s) 916, 1027
PspFI CCCAGC 2 cut(s) 745, 860
PspGI CCWGG 2 cut(s) 916, 1027
PspN4I GGNNCC 3 cut(s) 771, 843, 1326
PspPI GGNCC 4 cut(s) 85, 346, 370, 1262
PspPPI RGGWCCY 1 cut(s) 1262
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 6 cut(s) 359, 489, 771, 900, 915, 984
RsaNI GTAC 6 cut(s) 358, 488, 770, 899, 914, 983
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 494, 657, 851
SatI GCNGC 7 cut(s) 333, 801, 804, 807, 1077, 1179, 1287
Sau3AI GATC 3 cut(s) 136, 952, 1011
Sau96I GGNCC 4 cut(s) 85, 346, 370, 1262
SchI GAGTC 3 cut(s) 332, 727, 781
ScrFI CCNGG 2 cut(s) 918, 1029
SduI GDGCHC 3 cut(s) 18, 459, 1276
SfaNI GCATC 4 cut(s) 619, 1093, 1117, 1165
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 3 cut(s) 85, 370, 1262
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 4 cut(s) 67, 89, 375, 922
SsiI CCGC 2 cut(s) 72, 433
SspI AATATT 2 cut(s) 498, 937
SspMI CTAG 3 cut(s) 252, 285, 362
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 916, 1027
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 3 cut(s) 492, 769, 903
TaiI ACGT 2 cut(s) 529, 670
TaqI TCGA 1 cut(s) 931
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 67, 89, 375, 922
TatI WGTACW 2 cut(s) 487, 982
TfiI GAWTC 4 cut(s) 128, 317, 574, 1096
Tru1I TTAA 3 cut(s) 494, 657, 851
Tru9I TTAA 3 cut(s) 494, 657, 851
TscAI CASTG 2 cut(s) 523, 760
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 7 cut(s) 332, 800, 803, 806, 1076, 1178, 1286
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 5 cut(s) 220, 805, 869, 1008, 1182
TspGWI ACGGA 3 cut(s) 959, 968, 1266
TspRI CASTG 2 cut(s) 523, 760
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 3 cut(s) 85, 370, 1262
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 2 cut(s) 375, 922
XceI RCATGY 2 cut(s) 105, 914
XspI CTAG 3 cut(s) 252, 285, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.