Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Reverse (-)

4866395 .. 4869342

Gene Structure 2948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTTCGTCTCCGCCAAGTGGCTCCAGCAGTGAAGCCTGTTGAGAATGAAACTGCTTTCAAGAAATTGAAAGACAGGTTGCTGTCAGCTACGTCTGGGTCTGTGGAGGAAAGTAAAGACGCAAGTGGGTTTAGTTTTGAAGAATCTGAGTCTACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCAAAGAAGAAGATATTCCCGGCTCTTTTCGCACTTTATTATGAGGGTTGCCTCCCTAAACACTTTACTATTTGTGGTTATGCTCGGAGTAAGATGACTGATGCAGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCAATTTCTTGAAAGATGTTTCTACTACTCTGGTCAGCTGGAAGAATTCCTAACCGCCTGTTCTATTAATGTGGTCGACGATGTTGTTTCTTCAAGAAACATTACTGAATGGTTGCAGAACAATGCCCTCGAGCAGCTCATGGAGTTCACATCTCATCTCTACAAATTTCTTGAGCCTCATGAGGTGAAGTTAGTTTTGATGATCTATCTGCAGAAGAGAAGAAACTATTCCAAAGAGCTGTTGCTTCTGGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

209

Amino Acids

23.96

Weight (kDa)

6.01

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	57 - 139	4.1e-20	Glucose-6-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	152, 447
AciI	CCGC	2 cut(s)	13, 426
AcsI	RAATTY	2 cut(s)	416, 536
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	5 cut(s)	61, 70, 140, 383, 465
AluBI	AGCT	5 cut(s)	89, 301, 409, 508, 610
AluI	AGCT	5 cut(s)	89, 301, 409, 508, 610
Alw26I	GTCTC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	500
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	2 cut(s)	416, 536
AseI	ATTAAT	1 cut(s)	438
Asp700I	GAANNNNTTC	2 cut(s)	206, 598
AspS9I	GGNCC	2 cut(s)	187, 370
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	187, 370
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	581
BisI	GCNGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	507
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	187, 370
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	187, 370
BmiI	GGNNCC	2 cut(s)	24, 188
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	2 cut(s)	188, 283
BpmI	CTGGAG	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	2 cut(s)	13, 426
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	24, 188
BspMAI	CTGCAG	1 cut(s)	585
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	157, 169, 356
Bst6I	CTCTTC	1 cut(s)	581
BstDEI	CTNAG	2 cut(s)	147, 302
BstDSI	CCRYGG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	576
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	573
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	517
BtgI	CCRYGG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	2 cut(s)	187, 370
CseI	GACGC	2 cut(s)	128, 331
CviAII	CATG	3 cut(s)	310, 511, 551
CviJI	RGCY	9 cut(s)	23, 37, 89, 215, 301, 409, 508, 547, 610
CviKI_1	RGCY	9 cut(s)	23, 37, 89, 215, 301, 409, 508, 547, 610
DdeI	CTNAG	2 cut(s)	147, 302
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	187, 370
Eco88I	CYCGRG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	3 cut(s)	313, 514, 554
FaiI	YATR	5 cut(s)	234, 273, 311, 512, 552
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	309, 510, 550
FblI	GTMKAC	2 cut(s)	152, 447
Fnu4HI	GCNGC	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	506
GluI	GCNGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	9
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	2 cut(s)	128, 331
Hin1II	CATG	3 cut(s)	313, 514, 554
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	2 cut(s)	143, 149
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	3 cut(s)	153, 448, 519
Hpy188I	TCNGA	2 cut(s)	148, 279
Hpy188III	TCNNGA	6 cut(s)	61, 380, 465, 542, 551, 620
Hpy8I	GTNNAC	3 cut(s)	153, 448, 519
Hpy99I	CGWCG	1 cut(s)	452
HpyCH4III	ACNGT	3 cut(s)	157, 169, 356
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	194, 296, 333, 487, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	147, 302
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	3 cut(s)	313, 514, 554
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	28, 176
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	2 cut(s)	188, 283
MaeII	ACGT	1 cut(s)	92
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MboII	GAAGA	7 cut(s)	152, 211, 214, 425, 453, 598, 603
MluCI	AATT	5 cut(s)	65, 336, 374, 416, 536
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	100, 229, 254, 339, 509, 547, 558
MroXI	GAANNNNTTC	2 cut(s)	206, 598
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	3 cut(s)	313, 514, 554
NlaIV	GGNNCC	2 cut(s)	24, 188
PaeR7I	CTCGAG	1 cut(s)	500
PagI	TCATGA	1 cut(s)	550
PdmI	GAANNNNTTC	2 cut(s)	206, 598
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	507
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	24, 188
PspPI	GGNCC	2 cut(s)	187, 370
PspPPI	RGGWCCY	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	409
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	1 cut(s)	506
Sau3AI	GATC	1 cut(s)	573
Sau96I	GGNCC	2 cut(s)	187, 370
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	9 cut(s)	80, 91, 95, 192, 303, 411, 510, 558, 612
SfaNI	GCATC	2 cut(s)	188, 283
SfcI	CTRYAG	1 cut(s)	581
Sfr274I	CTCGAG	1 cut(s)	500
SinI	GGWCC	2 cut(s)	187, 370
SlaI	CTCGAG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	500, 542
SmoI	CTYRAG	2 cut(s)	500, 542
Sse9I	AATT	5 cut(s)	65, 336, 374, 416, 536
SsiI	CCGC	2 cut(s)	13, 426
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	157, 169, 356
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	447, 501
TasI	AATT	5 cut(s)	65, 336, 374, 416, 536
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	505
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	187, 370
VspI	ATTAAT	1 cut(s)	438
XapI	RAATTY	2 cut(s)	416, 536
XhoI	CTCGAG	1 cut(s)	500
XmiI	GTMKAC	2 cut(s)	152, 447
XmnI	GAANNNNTTC	2 cut(s)	206, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.