Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

81728407 .. 81730333

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGACCCTTCCATCCACCCATTGCTGCCGTACTTACTCCTCCTCATCATCGGCGTCGTATTCTTCCATACACAGAAGCCTCCAGAGGGTGGCCGTTTCTCCGAGTCCGGAATGTTTCGTCTCCGCCAAGGTTTCTCTGCAGTCTCAATCCGTTTCGCAGCAAAATCGTGTCTTATTTGGATTTATGTTGGTTGTGTGGGCAGTGGCTCCAGCAGTGAAGCCTGTTGAGAATGAAAGTGCTTTCAAGAAATTGAAAGACGGGTTGCTGTCAGCTACGTCTGGGTCTGTGGAGGAAAGTAAAGACGCAAGTGGGTTTAGTTTTGAAGAATCTGAGTCTACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCAAAGAAGAAGATATTCCCGGCTTTTTTCGCACTTTATTATGAGGGTTGCCTCCCTAAACACTTTACTATTTGTGGTTATGCTCGGAGTAAGATGACTGGTGCAGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCGATTTCTTGAAAGATGTTTCTACTACTCTGGTCAGTATGATTCACAGGATCACTTTGCACAGCTGGACAAGAAACTAAAGGAACATGAGGCTGGAAGAATTCCTAACCGCCTGTTCTATCTATCTGTTCCTCCAAACATATTCATAGATGCGGTTCGCTGTGCAAGCTTGTCTGCTTCATCTGGTAATGGCTGGACTAGAGTTATTGTTGGTTTTGATCATGCAATTAGTGTGGGCCATAATCTAATAATTTTTTTCCCTTCAATTAACAGGATAGACCACTATCTGGGCAAGGAGCTAGTGGAAAACCTTTCAGTTCTTCGCTTTTCCAATCTTATTTTTGAACCCTTGTGGTCAAGGCAGTACATAAGGAATGTGCAGTTAATATTCTCTGAAGATTTTGGCACTGAAGGGCGTGGAGGGTACTTTGATAATTATGGGATAATAAGAGGCATAATGCAGAATCACTTGCTTCAAATACTAGCACTCTTTGCAATGGAAACCCCTGTCAGACACATTCTTGGATTTAGCCAAAAGGCCAAGAACATAGATGTGTGTTTCCAGACATGGGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

378

Amino Acids

42.36

Weight (kDa)

8.6

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	119 - 289	6.5e-37	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	292 - 357	4.3e-28	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	91, 844
AccI	GTMKAC	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	3 cut(s)	126, 667, 710
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	2 cut(s)	972, 987
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	3 cut(s)	34, 923, 983
AfiI	CCNNNNNNNGG	4 cut(s)	88, 91, 844, 1126
AgsI	TTSAA	7 cut(s)	247, 256, 326, 569, 822, 902, 1034
AluBI	AGCT	5 cut(s)	275, 487, 622, 726, 856
AluI	AGCT	5 cut(s)	275, 487, 622, 726, 856
Alw26I	GTCTC	2 cut(s)	127, 150
AlwI	GGATC	1 cut(s)	615
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	3 cut(s)	93, 793, 1095
ApeKI	GCWGC	2 cut(s)	27, 160
ApoI	RAATTY	1 cut(s)	657
Asp700I	GAANNNNTTC	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	373, 556, 793
AsuC2I	CCSGG	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	373, 556
BbvI	GCAGC	2 cut(s)	14, 172
BccI	CCATC	2 cut(s)	22, 547
BceAI	ACGGC	2 cut(s)	15, 80
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	127, 150
BfaI	CTAG	3 cut(s)	756, 857, 1040
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	28, 161
BlsI	GCNGC	2 cut(s)	29, 162
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	2 cut(s)	373, 556
BmgT120I	GGNCC	3 cut(s)	373, 556, 793
BmiI	GGNNCC	2 cut(s)	210, 374
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	374, 697
BpmI	CTGGAG	2 cut(s)	68, 195
BpuMI	CCSGG	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	129, 495
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 91, 844, 1126
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	2 cut(s)	22, 1059
BseAI	TCCGGA	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	129, 495
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	4 cut(s)	88, 91, 844, 1126
BseMI	GCAATG	2 cut(s)	22, 1059
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	2 cut(s)	14, 172
BsgI	GTGCAG	2 cut(s)	501, 956
BshFI	GGCC	3 cut(s)	95, 795, 1097
BsiSI	CCGG	2 cut(s)	110, 398
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	4 cut(s)	88, 91, 844, 1126
BsmAI	GTCTC	2 cut(s)	127, 150
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	3 cut(s)	95, 795, 1097
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	607, 775
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	3 cut(s)	126, 667, 710
BspANI	GGCC	3 cut(s)	95, 795, 1097
BspCNI	CTCAG	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	210, 374
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	615
BsrDI	GCAATG	2 cut(s)	22, 1059
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	129, 495
BssMI	GATC	2 cut(s)	607, 775
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	129, 495
Bst4CI	ACNGT	3 cut(s)	343, 355, 542
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	1049
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	2 cut(s)	333, 488
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	610, 778
BstMAI	GTCTC	2 cut(s)	127, 150
BstMBI	GATC	2 cut(s)	607, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 723, 1049
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	14, 172
BsuRI	GGCC	3 cut(s)	95, 795, 1097
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	2 cut(s)	210, 222
BtsIMutI	CAGTG	3 cut(s)	210, 222, 963
Cac8I	GCNNGC	1 cut(s)	724
Cfr13I	GGNCC	3 cut(s)	373, 556, 793
CseI	GACGC	3 cut(s)	45, 314, 517
Csp6I	GTAC	3 cut(s)	33, 922, 982
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CviAII	CATG	4 cut(s)	496, 644, 779, 1125
CviQI	GTAC	3 cut(s)	33, 922, 982
DdeI	CTNAG	2 cut(s)	333, 488
DpnI	GATC	2 cut(s)	609, 777
DpnII	GATC	2 cut(s)	607, 775
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	129, 495
Eco47I	GGWCC	2 cut(s)	373, 556
Eco57I	CTGAAG	2 cut(s)	972, 987
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	129, 495
ErhI	CCWWGG	2 cut(s)	129, 495
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	499, 647, 782, 1128
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	4 cut(s)	495, 643, 778, 1124
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	2 cut(s)	28, 161
Fsp4HI	GCNGC	2 cut(s)	28, 161
FspBI	CTAG	3 cut(s)	756, 857, 1040
GluI	GCNGC	2 cut(s)	28, 161
GsuI	CTGGAG	2 cut(s)	68, 195
HaeIII	GGCC	3 cut(s)	95, 795, 1097
HapII	CCGG	2 cut(s)	110, 398
HgaI	GACGC	3 cut(s)	45, 314, 517
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	499, 647, 782, 1128
HindIII	AAGCTT	1 cut(s)	724
HinfI	GANTC	5 cut(s)	106, 329, 335, 599, 1021
HpaII	CCGG	2 cut(s)	110, 398
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	5 cut(s)	105, 334, 465, 952, 1070
Hpy188III	TCNNGA	5 cut(s)	85, 110, 247, 566, 1120
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	20, 828, 962
HpyCH4III	ACNGT	3 cut(s)	343, 355, 542
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 723, 1049
HpyF3I	CTNAG	2 cut(s)	333, 488
HpySE526I	ACGT	1 cut(s)	278
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	499, 647, 782, 1128
Kpn2I	TCCGGA	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	607, 775
LmnI	GCTCC	3 cut(s)	214, 362, 853
Lsp1109I	GCAGC	2 cut(s)	14, 172
LweI	GCATC	2 cut(s)	374, 697
MaeI	CTAG	3 cut(s)	756, 857, 1040
MaeII	ACGT	1 cut(s)	278
MalI	GATC	2 cut(s)	609, 777
MboI	GATC	2 cut(s)	607, 775
MboII	GAAGA	7 cut(s)	57, 338, 397, 400, 666, 869, 965
MluCI	AATT	7 cut(s)	251, 522, 657, 783, 807, 822, 991
MlyI	GAGTC	2 cut(s)	115, 344
MmeI	TCCRAC	1 cut(s)	340
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	2 cut(s)	825, 941
MslI	CAYNNNNRTG	1 cut(s)	1109
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	2 cut(s)	110, 398
MspR9I	CCNGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	3 cut(s)	407, 723, 1049
NciI	CCSGG	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	2 cut(s)	607, 775
NlaIII	CATG	4 cut(s)	499, 647, 782, 1128
NlaIV	GGNNCC	2 cut(s)	210, 374
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	329, 599, 1021
PflMI	CCANNNNNTGG	2 cut(s)	91, 844
PkrI	GCNGC	2 cut(s)	29, 162
PleI	GAGTC	2 cut(s)	114, 343
PpsI	GAGTC	2 cut(s)	114, 343
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	210, 374
PspPI	GGNCC	3 cut(s)	373, 556, 793
PspPPI	RGGWCCY	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	3 cut(s)	34, 923, 983
RsaNI	GTAC	3 cut(s)	33, 922, 982
RseI	CAYNNNNRTG	1 cut(s)	1109
SaqAI	TTAA	2 cut(s)	825, 941
SatI	GCNGC	2 cut(s)	28, 161
Sau3AI	GATC	2 cut(s)	607, 775
Sau96I	GGNCC	3 cut(s)	373, 556, 793
SchI	GAGTC	2 cut(s)	115, 344
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	9 cut(s)	135, 277, 281, 378, 489, 624, 728, 858, 870
SfaNI	GCATC	2 cut(s)	374, 697
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	373, 556
SmiMI	CAYNNNNRTG	1 cut(s)	1109
Sse9I	AATT	7 cut(s)	251, 522, 657, 783, 807, 822, 991
SsiI	CCGC	3 cut(s)	126, 667, 710
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	3 cut(s)	756, 857, 1040
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	2 cut(s)	129, 495
TaaI	ACNGT	3 cut(s)	343, 355, 542
TaiI	ACGT	1 cut(s)	281
TaqII	GACCGA	1 cut(s)	573
TasI	AATT	7 cut(s)	251, 522, 657, 783, 807, 822, 991
TatI	WGTACW	1 cut(s)	921
TfiI	GAWTC	3 cut(s)	329, 599, 1021
Tru1I	TTAA	2 cut(s)	825, 941
Tru9I	TTAA	2 cut(s)	825, 941
TscAI	CASTG	3 cut(s)	210, 222, 970
TseI	GCWGC	2 cut(s)	27, 160
TspDTI	ATGAA	3 cut(s)	249, 691, 726
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	3 cut(s)	210, 222, 970
Van91I	CCANNNNNTGG	2 cut(s)	91, 844
VpaK11BI	GGWCC	2 cut(s)	373, 556
XapI	RAATTY	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	3 cut(s)	756, 857, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.