Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012016.1

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

31844 .. 32685

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012016.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggcgacccttccatccacccattgctgccgtacttactcctcctcatcatcggcgtcgtattcttccgtacacagaagcctccagagggtggccgtttctccgagtccgcaacgtttcgtctccgccaaggtttctctgcagtctcaatccgtttcgcagcaaaatgttgtcagcatgcaagatgtggctccagcagtgaagcctgttgagaatgaaactgctttcaagaaattgaaagacgggttgctgtcagctacgtctgggtctgtggaggaaagtaaagacgcaagtgggtttagttttgaagaatctaagtctactgtgagtattactgtggttggagcatctggggaccttgcaaagaagaagatattcccggctcttttcgcactttattatgagggttgcctccctaaacactttactatttgtggttatgctcggagtaagatgactgatgcagagcttagaaccatggttagcaagacgcttacttgcagaattgaccagaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

172

Amino Acids

18.58

Weight (kDa)

9.26

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	2 cut(s)	110, 126
AclI	AACGTT	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	34, 72
AfiI	CCNNNNNNNGG	2 cut(s)	88, 91
AgsI	TTSAA	3 cut(s)	229, 238, 308
AluBI	AGCT	2 cut(s)	257, 469
AluI	AGCT	2 cut(s)	257, 469
Alw26I	GTCTC	2 cut(s)	127, 150
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	27, 160
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	14, 172
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	2 cut(s)	15, 80
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	127, 150
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	28, 161
BlsI	GCNGC	2 cut(s)	29, 162
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	192, 356
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	356, 451
BpmI	CTGGAG	2 cut(s)	68, 177
BpuMI	CCSGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	129, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 91
Bse3DI	GCAATG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	129, 477
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	88, 91
BseMI	GCAATG	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	2 cut(s)	14, 172
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	88, 91
BsmAI	GTCTC	2 cut(s)	127, 150
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	2 cut(s)	110, 126
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	192, 356
BspMAI	CTGCAG	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	129, 477
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	129, 477
Bst4CI	ACNGT	2 cut(s)	325, 337
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	315, 470
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	127, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	14, 172
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	3 cut(s)	45, 296, 499
Csp6I	GTAC	2 cut(s)	33, 71
CviAII	CATG	2 cut(s)	178, 478
CviJI	RGCY	7 cut(s)	81, 95, 191, 205, 257, 383, 469
CviKI_1	RGCY	7 cut(s)	81, 95, 191, 205, 257, 383, 469
CviQI	GTAC	2 cut(s)	33, 71
DdeI	CTNAG	2 cut(s)	315, 470
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	129, 477
Eco47I	GGWCC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	129, 477
ErhI	CCWWGG	2 cut(s)	129, 477
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	2 cut(s)	181, 481
FaiI	YATR	4 cut(s)	179, 402, 441, 479
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	177, 477
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	28, 161
Fsp4HI	GCNGC	2 cut(s)	28, 161
GluI	GCNGC	2 cut(s)	28, 161
GsuI	CTGGAG	2 cut(s)	68, 177
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	3 cut(s)	45, 296, 499
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	181, 481
HinfI	GANTC	2 cut(s)	106, 311
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	73, 321
Hpy188I	TCNGA	2 cut(s)	105, 447
Hpy188III	TCNNGA	2 cut(s)	85, 229
Hpy8I	GTNNAC	2 cut(s)	73, 321
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	325, 337
HpyCH4IV	ACGT	2 cut(s)	115, 260
HpyCH4V	TGCA	5 cut(s)	142, 181, 362, 464, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	315, 470
HpySE526I	ACGT	2 cut(s)	115, 260
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	181, 481
LmnI	GCTCC	2 cut(s)	196, 344
LpnPI	CCDG	6 cut(s)	98, 207, 219, 249, 336, 393
Lsp1109I	GCAGC	2 cut(s)	14, 172
LweI	GCATC	2 cut(s)	356, 451
MaeII	ACGT	2 cut(s)	115, 260
MboII	GAAGA	4 cut(s)	57, 320, 379, 382
MluCI	AATT	2 cut(s)	233, 504
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	8 cut(s)	52, 55, 81, 92, 268, 397, 422, 507
MroXI	GAANNNNTTC	1 cut(s)	374
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	477
NlaIII	CATG	2 cut(s)	181, 481
NlaIV	GGNNCC	2 cut(s)	192, 356
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	29, 162
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	355
Psp1406I	AACGTT	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	192, 356
PspPI	GGNCC	1 cut(s)	355
PspPPI	RGGWCCY	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	144
RsaI	GTAC	2 cut(s)	34, 72
RsaNI	GTAC	2 cut(s)	33, 71
SatI	GCNGC	2 cut(s)	28, 161
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	7 cut(s)	118, 135, 259, 263, 360, 471, 518
SfaNI	GCATC	2 cut(s)	356, 451
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	355
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	2 cut(s)	233, 504
SsiI	CCGC	2 cut(s)	110, 126
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	129, 477
TaaI	ACNGT	2 cut(s)	325, 337
TaiI	ACGT	2 cut(s)	118, 263
TasI	AATT	2 cut(s)	233, 504
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	2 cut(s)	27, 160
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	2 cut(s)	58, 142
TspRI	CASTG	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	355
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.