Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

20067893 .. 20068773

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG139400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCAAGATGTGGCTCCAACAGTGAAGCCTGTTGAGAATGAAACTGCTTTCAAGAAATTGAAAGACGGGTTGCTGTCAGCTACGTCTGGGTTTGTGGAGGAAAGTAAAGACGCAAGTGGGTTTAGTTTTGAAGAATCTGAGTCTACTGTGAGTATTACTGTGGTTGGAGCATCTGGGGACCTTGCAAAGAAGAAGATATTCCCGGCTCTTTTCGCACTTTATTATGAAGGTTGCCTCCCTAAACACTTTACTATTTGTGGTTATGCTCGGAGTAAGATGACTGATGCAGAGCTTAGAACCATGGTTAGCAAGACGCTTACTTGCAGAATTGACCAGAGGGAGAACTGTGGCGAAAAGATGGACCGATTTCTTGAAAGATGTTTCTACTACTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

132

Amino Acids

14.7

Weight (kDa)

5.89

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	54 - 131	1.8e-19	Glucose-6-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	52, 61, 131, 374
AluBI	AGCT	2 cut(s)	80, 292
AluI	AGCT	2 cut(s)	80, 292
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	178, 361
AsuC2I	CCSGG	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	178, 361
BccI	CCATC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	2 cut(s)	178, 361
BmgT120I	GGNCC	2 cut(s)	178, 361
BmiI	GGNNCC	2 cut(s)	15, 179
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	179, 274
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	15, 179
BssECI	CCNNGG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	4 cut(s)	22, 148, 160, 347
BstDEI	CTNAG	2 cut(s)	138, 293
BstDSI	CCRYGG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	178, 361
CseI	GACGC	2 cut(s)	119, 322
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	5 cut(s)	14, 28, 80, 206, 292
CviKI_1	RGCY	5 cut(s)	14, 28, 80, 206, 292
DdeI	CTNAG	2 cut(s)	138, 293
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	178, 361
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	304
FaiI	YATR	3 cut(s)	225, 264, 302
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	143
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	2 cut(s)	119, 322
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	2 cut(s)	134, 140
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	139, 270
Hpy188III	TCNNGA	2 cut(s)	52, 371
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	4 cut(s)	22, 148, 160, 347
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	4, 185, 287, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	138, 293
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	19, 167
LpnPI	CCDG	6 cut(s)	42, 72, 159, 216, 347, 378
LweI	GCATC	2 cut(s)	179, 274
MaeII	ACGT	1 cut(s)	83
MboII	GAAGA	3 cut(s)	143, 202, 205
MluCI	AATT	2 cut(s)	56, 327
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	41, 145
MnlI	CCTC	3 cut(s)	91, 245, 330
MroXI	GAANNNNTTC	1 cut(s)	197
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	300
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	2 cut(s)	15, 179
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	15, 179
PspPI	GGNCC	2 cut(s)	178, 361
PspPPI	RGGWCCY	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	178, 361
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	82, 86, 183, 232, 294
SfaNI	GCATC	2 cut(s)	179, 274
SinI	GGWCC	2 cut(s)	178, 361
Sse9I	AATT	2 cut(s)	56, 327
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	4 cut(s)	22, 148, 160, 347
TaiI	ACGT	1 cut(s)	86
TaqII	GACCGA	1 cut(s)	378
TasI	AATT	2 cut(s)	56, 327
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	27
TspDTI	ATGAA	2 cut(s)	54, 240
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	178, 361
XmiI	GTMKAC	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.