Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

36740968 .. 36742515

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATGGGTTGAAGATGGAATTTGCATGCAACCAGATCGCATTCCCTTCGGAGTGTTTTGAGTTCTCGTGCCTTGTACATCTTTATGATCTTGCATTCCCTCTTGGCATGTTCCTATACAACAAATGTGCGTCTTATTTTGATTTTGTATTGGTTGTGTGTGCATTGGCTCCAACAGTGAAGCGTGTGAAGAATGAAACTGCTTTTAAGAAATTGAAAGATGGGTTGCTTTCAGCTACGTCTGGGTCTGTAAAAGAAAATAAATACTCGAGTGGGTTTAGTTTCAAAGAAACTGAGTCCACTAAGTATTACTGTGGGTGGAGACTTGGAGCATTTGGGGACCTTGTTAAGAAGAAGATATTCCCGGCTTTTTTCATACTTTATCATGACGGTTGCCTACCAAAGCACTTTACTATTTTTGGTTATACTCGGAGTAAGATGACTGATGCGGAGCTAAGAACTATGGTTAGCAAGACACTTGCTTGCACAATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

166

Amino Acids

18.69

Weight (kDa)

8.86

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	109 - 160	7.8e-12	Glucose-6-phosphate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	13, 217, 286
AluBI	AGCT	2 cut(s)	236, 454
AluI	AGCT	2 cut(s)	236, 454
Alw26I	GTCTC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	340
BauI	CACGAG	1 cut(s)	67
BccI	CCATC	2 cut(s)	10, 215
BcgI	CGANNNNNNTGC	4 cut(s)	19, 30, 53, 64
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	171, 341
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	436
BpuMI	CCSGG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	2 cut(s)	41, 95
BsoBI	CYCGRG	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	36, 88
BspACI	CCGC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	171, 341
BsrGI	TGTACA	1 cut(s)	76
BssMI	GATC	2 cut(s)	36, 88
BssSI	CACGAG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	178, 314, 392
BstAUI	TGTACA	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	28, 484
BstDEI	CTNAG	3 cut(s)	294, 303, 455
BstKTI	GATC	2 cut(s)	39, 91
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	2 cut(s)	36, 88
BstNSI	RCATGY	2 cut(s)	30, 112
BstSCI	CCNGG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	28, 484
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	27, 109, 386
CviJI	RGCY	4 cut(s)	170, 236, 368, 454
CviKI_1	RGCY	4 cut(s)	170, 236, 368, 454
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	294, 303, 455
DpnI	GATC	2 cut(s)	38, 90
DpnII	GATC	2 cut(s)	36, 88
Eco47I	GGWCC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	340
FaeI	CATG	3 cut(s)	30, 112, 389
FaiI	YATR	8 cut(s)	28, 87, 110, 118, 377, 387, 426, 464
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	26, 108, 385
FspBI	CTAG	1 cut(s)	496
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	30, 112, 389
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	52, 432
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	3 cut(s)	178, 314, 392
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	5 cut(s)	26, 30, 95, 164, 486
HpyF3I	CTNAG	3 cut(s)	294, 303, 455
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	30, 112, 389
Kzo9I	GATC	2 cut(s)	36, 88
LmnI	GCTCC	3 cut(s)	175, 329, 451
LpnPI	CCDG	3 cut(s)	47, 228, 378
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	496
MaeII	ACGT	1 cut(s)	239
MalI	GATC	2 cut(s)	38, 90
MboI	GATC	2 cut(s)	36, 88
MboII	GAAGA	4 cut(s)	25, 202, 364, 367
MfeI	CAATTG	1 cut(s)	489
MluCI	AATT	3 cut(s)	20, 212, 489
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	2 cut(s)	207, 348
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	365
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	2 cut(s)	41, 95
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	2 cut(s)	36, 88
NlaIII	CATG	3 cut(s)	30, 112, 389
NlaIV	GGNNCC	2 cut(s)	171, 341
NspI	RCATGY	2 cut(s)	30, 112
PaeI	GCATGC	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	268
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	2 cut(s)	41, 95
PdmI	GAANNNNTTC	1 cut(s)	359
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	171, 341
PspPI	GGNCC	1 cut(s)	340
PspPPI	RGGWCCY	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	268
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	207, 348
Sau3AI	GATC	2 cut(s)	36, 88
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	4 cut(s)	238, 242, 345, 456
SfaNI	GCATC	1 cut(s)	436
Sfr274I	CTCGAG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	3 cut(s)	20, 212, 489
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	178, 314, 392
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	269
TasI	AATT	3 cut(s)	20, 212, 489
TatI	WGTACW	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	207, 348
Tru9I	TTAA	2 cut(s)	207, 348
TscAI	CASTG	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	17, 210, 364
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	2 cut(s)	30, 112
XhoI	CTCGAG	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.