pycom13g10700

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
7216381 .. 7218886
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10700.4

Sequence Viewer

Length: 1230 bp
ATGAAGAAAACCTCTTCCTTTCTAACACCACTGGCAAAGGGCAAGCAAAACTTGTCTATAGTTTGTCTTGGTAAGCTGTACGGTATTCCGCTCCTTGCAATCGTTGGATTGCTGGCACACCAAAAGACAAAACAGCCTTTCGGAGATCTCAAGGGTCCTCCATTACCCCGACCCTTTCGATACTTCCCATGTTTCTTCCTTGTTAACTCTCTCCGACCTCCTCACCCCAAAACCCAGCACCCCATTTCTCCACTGAATTCCGATCCCGACCAACAAACTAAAAAGCAGAGAGAGAGAGAGATGGCGACTCCTCCTTCCACCCATTTCTGCCACACCTACTCGCCGCCGCTGCCACCGTCATCATCGTCGTCATCTGTTTCGTATTTACCTGTTTATTCATCTGTACACGGACGCCTACAACGCGTTTCAATTTCTTCGATTCCGAGACGTTTTGTTTCAGCTAAGGTTTCTCAGCAGAATGCTGTCGGCTTGCAAGACGGCCCGCCGGCGCCGGCGGTCAACCCAATTGAGAACGAAGCTCCTTTCGAGAAACTGAAAGATGGGTTGCTTTCAGCTCCGTCTTCGAAGGAATCTAAAGACACGGCCGTGTTTAATGTTAATGAAAGTGAATCTACTGTCAGTATCACGGTGGTTGGAGCCTCCGGGGACCTTGCCAAGAAGAAGATTTTCCCCGCACTTTTCGCACTTTTCTACGAGGATTGCCTCCCGAAGCACTTCACTATTTATGGTTATGCTCGGAGTAAGATGACCGATACCGAGCTCAGAGACATGGTTAGCAAGACGCTTACTTGCCGAATCGACAAGAGGGAGAATTGCAGTGAGAAAATGGACCAATTTCTTCAAAGATGTTTCTATCATTCTGGTCAGTATGATTCGCAGGATCATTTCGCAGAGCTGGACAAGAAGCTAAAGGAACATGAGGCAGGAAGAGTTCCTAATCGCCTGTTTTATCTGTCTGTTCCTCCAAACATATTCATCGATGCTGTTCGCTGTGCTAGCTCGTCGGCTTCATCTTGTAATGGCTGGACTAGGGTTATTGTTGAGAAACCCTTTGGCCGAGATTCAGAATCATCTGCTACTTTGACCAGTGCCCTCAAACAGTACCTAGAAGAGGATCAATTTTTTTTCCAACTTCAGGATAGACCACTATCTGGGCAAGGAGCTTGTGGAAAACCTATCAGTTCTCCGCTTCTCCAACCTTATTTTTGA

Protein Analysis

410

Amino Acids

45.51

Weight (kDa)

9.14

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 1172
AccBSI CCGCTC 1 cut(s) 91
AccII CGCG 1 cut(s) 423
AciI CCGC 7 cut(s) 89, 344, 347, 503, 515, 693, 1208
AclWI GGATC 3 cut(s) 257, 909, 1143
AcoI YGGCCR 2 cut(s) 603, 1075
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 1139
AcyI GRCGYC 2 cut(s) 412, 509
AfaI GTAC 3 cut(s) 80, 405, 1124
AfiI CCNNNNNNNGG 3 cut(s) 1132, 1156, 1172
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 2 cut(s) 429, 863
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 9 cut(s) 76, 461, 539, 575, 781, 916, 928, 1020, 1184
AluI AGCT 9 cut(s) 76, 461, 539, 575, 781, 916, 928, 1020, 1184
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 2 cut(s) 439, 780
AlwI GGATC 3 cut(s) 257, 909, 1143
AoxI GGCC 3 cut(s) 499, 603, 1075
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 2 cut(s) 686, 734
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 4 cut(s) 155, 500, 667, 850
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 1016
AvaII GGWCC 3 cut(s) 155, 667, 850
BaeGI GKGCMC 1 cut(s) 1114
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 783
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 295, 554
BceAI ACGGC 3 cut(s) 514, 590, 618
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 439, 780
BfaI CTAG 3 cut(s) 1017, 1050, 1127
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 512
BglII AGATCT 1 cut(s) 145
BisI GCNGC 3 cut(s) 344, 347, 350
BlsI GCNGC 3 cut(s) 345, 348, 351
Bme1390I CCNGG 1 cut(s) 664
Bme18I GGWCC 3 cut(s) 155, 667, 850
BmgT120I GGNCC 4 cut(s) 155, 500, 667, 850
BmiI GGNNCC 4 cut(s) 156, 510, 658, 668
BmrFI CCNGG 1 cut(s) 664
BmsI GCATC 1 cut(s) 991
BmtI GCTAGC 1 cut(s) 1020
BpiI GAAGAC 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 664
Bsa29I ATCGAT 1 cut(s) 999
BsaHI GRCGYC 2 cut(s) 412, 509
BsaJI CCNNGG 1 cut(s) 663
Bsc4I CCNNNNNNNGG 3 cut(s) 1132, 1156, 1172
Bse118I RCCGGY 2 cut(s) 505, 511
Bse1I ACTGG 2 cut(s) 36, 1107
BseCI ATCGAT 1 cut(s) 999
BseDI CCNNGG 1 cut(s) 663
BseLI CCNNNNNNNGG 3 cut(s) 1132, 1156, 1172
BseMII CTCAG 2 cut(s) 485, 796
BseNI ACTGG 2 cut(s) 36, 1107
BseRI GAGGAG 2 cut(s) 210, 300
BseSI GKGCMC 1 cut(s) 1114
BseX3I CGGCCG 1 cut(s) 603
BseXI GCAGC 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 3 cut(s) 501, 605, 1077
BshNI GGYRCC 1 cut(s) 508
BshVI ATCGAT 1 cut(s) 999
BsiEI CGRYCG 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 3 cut(s) 506, 512, 663
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 3 cut(s) 1132, 1156, 1172
BsmAI GTCTC 2 cut(s) 439, 780
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 3 cut(s) 501, 605, 1077
Bsp119I TTCGAA 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 783, 1114
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 4 cut(s) 145, 262, 901, 1135
BspACI CCGC 7 cut(s) 89, 344, 347, 503, 515, 693, 1208
BspANI GGCC 3 cut(s) 501, 605, 1077
BspCNI CTCAG 2 cut(s) 484, 795
BspDI ATCGAT 1 cut(s) 999
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 4 cut(s) 156, 510, 658, 668
BspOI GCTAGC 1 cut(s) 1020
BspPI GGATC 3 cut(s) 257, 909, 1143
BspT104I TTCGAA 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 508
BsrBI CCGCTC 1 cut(s) 91
BsrFI RCCGGY 2 cut(s) 505, 511
BsrGI TGTACA 1 cut(s) 403
BsrI ACTGG 2 cut(s) 36, 1107
BssAI RCCGGY 2 cut(s) 505, 511
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 4 cut(s) 145, 262, 901, 1135
BssNI GRCGYC 2 cut(s) 412, 509
Bst4CI ACNGT 5 cut(s) 83, 357, 637, 649, 1122
Bst6I CTCTTC 3 cut(s) 19, 943, 1125
BstACI GRCGYC 2 cut(s) 412, 509
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 7 cut(s) 44, 114, 491, 503, 507, 513, 1018
BstDEI CTNAG 3 cut(s) 462, 471, 782
BstENI CCTNNNNNAGG 1 cut(s) 1130
BstFNI CGCG 1 cut(s) 423
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 4 cut(s) 148, 265, 904, 1138
BstMAI GTCTC 2 cut(s) 439, 780
BstMBI GATC 4 cut(s) 145, 262, 901, 1135
BstMCI CGRYCG 1 cut(s) 606
BstMWI GCNNNNNNNGC 4 cut(s) 349, 420, 701, 1017
BstSCI CCNGG 1 cut(s) 662
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 1114
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BstZI CGGCCG 1 cut(s) 603
Bsu15I ATCGAT 1 cut(s) 999
BsuRI GGCC 3 cut(s) 501, 605, 1077
BsuTUI ATCGAT 1 cut(s) 999
BtsI GCAGTG 1 cut(s) 844
BtsIMutI CAGTG 4 cut(s) 29, 251, 844, 1114
Cac8I GCNNGC 7 cut(s) 44, 114, 491, 503, 507, 513, 1018
CfoI GCGC 1 cut(s) 511
Cfr10I RCCGGY 2 cut(s) 505, 511
Cfr13I GGNCC 4 cut(s) 155, 500, 667, 850
ClaI ATCGAT 1 cut(s) 999
CseI GACGC 2 cut(s) 420, 811
Csp6I GTAC 3 cut(s) 79, 404, 1123
CviAII CATG 3 cut(s) 189, 790, 938
CviQI GTAC 3 cut(s) 79, 404, 1123
DdeI CTNAG 3 cut(s) 462, 471, 782
DinI GGCGCC 1 cut(s) 510
DpnI GATC 4 cut(s) 147, 264, 903, 1137
DpnII GATC 4 cut(s) 145, 262, 901, 1135
EaeI YGGCCR 2 cut(s) 603, 1075
EagI CGGCCG 1 cut(s) 603
Eam1104I CTCTTC 3 cut(s) 19, 943, 1125
EarI CTCTTC 3 cut(s) 19, 943, 1125
Ecl136II GAGCTC 1 cut(s) 781
EclXI CGGCCG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 783
Eco47I GGWCC 3 cut(s) 155, 667, 850
Eco52I CGGCCG 1 cut(s) 603
Eco53kI GAGCTC 1 cut(s) 781
Eco57I CTGAAG 1 cut(s) 1139
EcoICRI GAGCTC 1 cut(s) 781
EcoNI CCTNNNNNAGG 1 cut(s) 1130
EcoO109I RGGNCCY 2 cut(s) 155, 667
EcoRI GAATTC 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 783
EgeI GGCGCC 1 cut(s) 510
EheI GGCGCC 1 cut(s) 510
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 3 cut(s) 192, 793, 941
FaiI YATR 8 cut(s) 59, 190, 747, 753, 791, 891, 939, 992
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 1 cut(s) 680
FatI CATG 3 cut(s) 188, 789, 937
FauI CCCGC 2 cut(s) 510, 700
Fnu4HI GCNGC 3 cut(s) 344, 347, 350
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 3 cut(s) 344, 347, 350
FspBI CTAG 3 cut(s) 1017, 1050, 1127
GlaI GCGC 1 cut(s) 510
GluI GCNGC 3 cut(s) 344, 347, 350
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 3 cut(s) 501, 605, 1077
HapII CCGG 3 cut(s) 506, 512, 663
HgaI GACGC 2 cut(s) 420, 811
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 2 cut(s) 412, 509
Hin1II CATG 3 cut(s) 192, 793, 941
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 2 cut(s) 205, 520
HindII GTYRAC 2 cut(s) 205, 520
HinfI GANTC 8 cut(s) 307, 439, 590, 629, 816, 893, 1082, 1088
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 3 cut(s) 506, 512, 663
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 205, 406, 520
Hpy188I TCNGA 7 cut(s) 143, 215, 262, 444, 759, 785, 1087
Hpy188III TCNNGA 4 cut(s) 266, 547, 727, 1157
Hpy8I GTNNAC 3 cut(s) 205, 406, 520
Hpy99I CGWCG 2 cut(s) 370, 1027
HpyAV CCTTC 2 cut(s) 324, 580
HpyCH4III ACNGT 5 cut(s) 83, 357, 637, 649, 1122
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 3 cut(s) 98, 493, 837
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 420, 701, 1017
HpyF3I CTNAG 3 cut(s) 462, 471, 782
HpySE526I ACGT 1 cut(s) 448
Hsp92I GRCGYC 2 cut(s) 412, 509
Hsp92II CATG 3 cut(s) 192, 793, 941
HspAI GCGC 1 cut(s) 509
KasI GGCGCC 1 cut(s) 508
KroI GCCGGC 2 cut(s) 505, 511
KroNI GCCGGC 2 cut(s) 507, 513
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 4 cut(s) 145, 262, 901, 1135
LmnI GCTCC 5 cut(s) 96, 544, 580, 656, 1181
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 1 cut(s) 991
MaeI CTAG 3 cut(s) 1017, 1050, 1127
MaeII ACGT 1 cut(s) 448
MalI GATC 4 cut(s) 147, 264, 903, 1137
MbiI CCGCTC 1 cut(s) 91
MboI GATC 4 cut(s) 145, 262, 901, 1135
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 783, 1114
MluCI AATT 6 cut(s) 256, 429, 525, 832, 854, 1139
MluI ACGCGT 1 cut(s) 421
Mly113I GGCGCC 1 cut(s) 509
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 4 cut(s) 85, 238, 634, 1174
MreI CGCCGGCG 2 cut(s) 505, 511
MroNI GCCGGC 2 cut(s) 505, 511
MroXI GAANNNNTTC 2 cut(s) 686, 734
MseI TTAA 3 cut(s) 204, 612, 618
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 349
MspI CCGG 3 cut(s) 506, 512, 663
MspR9I CCNGG 1 cut(s) 664
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 484
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 4 cut(s) 349, 420, 701, 1017
NaeI GCCGGC 2 cut(s) 507, 513
NarI GGCGCC 1 cut(s) 509
NciI CCSGG 1 cut(s) 664
NdeII GATC 4 cut(s) 145, 262, 901, 1135
NgoMIV GCCGGC 2 cut(s) 505, 511
NheI GCTAGC 1 cut(s) 1016
NlaIII CATG 3 cut(s) 192, 793, 941
NlaIV GGNNCC 4 cut(s) 156, 510, 658, 668
NmeAIII GCCGAG 1 cut(s) 1103
NspV TTCGAA 1 cut(s) 584
OliI CACNNNNGTG 1 cut(s) 605
PctI GAATGC 1 cut(s) 484
PdiI GCCGGC 2 cut(s) 507, 513
PdmI GAANNNNTTC 2 cut(s) 686, 734
PfeI GAWTC 7 cut(s) 439, 590, 629, 816, 893, 1082, 1088
PflMI CCANNNNNTGG 1 cut(s) 1172
PkrI GCNGC 3 cut(s) 345, 348, 351
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 301
PpuMI RGGWCCY 2 cut(s) 155, 667
Psp124BI GAGCTC 1 cut(s) 783
Psp5II RGGWCCY 2 cut(s) 155, 667
PspFI CCCAGC 1 cut(s) 234
PspN4I GGNNCC 4 cut(s) 156, 510, 658, 668
PspPI GGNCC 4 cut(s) 155, 500, 667, 850
PspPPI RGGWCCY 2 cut(s) 155, 667
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 80, 405, 1124
RsaNI GTAC 3 cut(s) 79, 404, 1123
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 1 cut(s) 783
SaqAI TTAA 3 cut(s) 204, 612, 618
SatI GCNGC 3 cut(s) 344, 347, 350
Sau3AI GATC 4 cut(s) 145, 262, 901, 1135
Sau96I GGNCC 4 cut(s) 155, 500, 667, 850
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 664
SduI GDGCHC 2 cut(s) 783, 1114
SfaNI GCATC 1 cut(s) 991
SfcI CTRYAG 1 cut(s) 57
SfoI GGCGCC 1 cut(s) 510
SfuI TTCGAA 1 cut(s) 584
SgrAI CRCCGGYG 2 cut(s) 505, 511
SinI GGWCC 3 cut(s) 155, 667, 850
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 6 cut(s) 256, 429, 525, 832, 854, 1139
SsiI CCGC 7 cut(s) 89, 344, 347, 503, 515, 693, 1208
SspDI GGCGCC 1 cut(s) 508
SspMI CTAG 3 cut(s) 1017, 1050, 1127
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 1 cut(s) 662
TaaI ACNGT 5 cut(s) 83, 357, 637, 649, 1122
TaiI ACGT 1 cut(s) 451
TaqI TCGA 6 cut(s) 178, 437, 546, 584, 819, 999
TaqII GACCGA 1 cut(s) 785
TasI AATT 6 cut(s) 256, 429, 525, 832, 854, 1139
TatI WGTACW 1 cut(s) 403
TauI GCSGC 2 cut(s) 346, 349
TfiI GAWTC 7 cut(s) 439, 590, 629, 816, 893, 1082, 1088
Tru1I TTAA 3 cut(s) 204, 612, 618
Tru9I TTAA 3 cut(s) 204, 612, 618
TscAI CASTG 4 cut(s) 36, 258, 844, 1114
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 5 cut(s) 17, 387, 636, 985, 1020
TspGWI ACGGA 2 cut(s) 423, 567
TspRI CASTG 4 cut(s) 36, 258, 844, 1114
Van91I CCANNNNNTGG 1 cut(s) 1172
VpaK11BI GGWCC 3 cut(s) 155, 667, 850
XagI CCTNNNNNAGG 1 cut(s) 1130
XapI RAATTY 1 cut(s) 256
XmnI GAANNNNTTC 2 cut(s) 686, 734
XspI CTAG 3 cut(s) 1017, 1050, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.