Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010349.1

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1453

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010349.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ggccgagattcagaatcatctgctgctttgaccaaagccctcaagcagtacctagaagaggatcagatattcaggatagaccactatctgggcaaggagctagtggaaaacctttcagttcttcgcttttccaatcttatttttgaacccttgtggtcaaggcagtacataaggaatgtgcagttaatattctctgaagattttggcactgaagggcgtggagggtactttgataattatgggataataagagacataatgcagaatcacttgcttcaaatactggcgctctttgcaatggaaacccctgtcagtttggatgcagaagatattagaaatgaaaaggtcaaagttttgcgttccatgaggccattgcaacttgaaaatgtggtaacagggcaatacaagagccatgtcagaggaggtattacttacccagcctacactgatgacaaaactgtacccaaagacagtttgactccaacatttgcagcagctgcactcttcatagacaatgcaagatgggatggggtgcctttcctaatgaaagctgggaaagcattacataataagagggctgagataagggtacagtttcggcatgttcctggaaatttgtataatcgaaacattggaacagatcttgatcgtgctacaaatgaacttgtaatccgagtacagcctgatgaagctatctttctgaagatcaacaacaaagtccctggtttgggaatgcggttggacaggagtaatttgaatcttcattatgcagccagatattcaactgagattccagatgcgtacgagagacttctgctggatgctattgaaggggaaaggagactgttcatccggagcgatgaactagatgcagcttgggcactcttcacacctttgttgaaagagatagaagagaaaaagattattccagagtactatccttacggaagtaggggtcctgttggggcacactatcttgcagcaagatacaaagtccggtggggtgatgttggtctggatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

341

Amino Acids

39.12

Weight (kDa)

6.45

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	852
AciI	CCGC	1 cut(s)	736
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	3 cut(s)	216, 231, 722
AfaI	GTAC	8 cut(s)	50, 167, 227, 462, 591, 678, 803, 935
AfiI	CCNNNNNNNGG	4 cut(s)	58, 88, 727, 728
AgsI	TTSAA	7 cut(s)	146, 278, 383, 757, 783, 830, 901
AjnI	CCWGG	2 cut(s)	607, 721
AloI	GAACNNNNNNTCC	2 cut(s)	654, 686
AluBI	AGCT	5 cut(s)	100, 497, 551, 692, 875
AluI	AGCT	5 cut(s)	100, 497, 551, 692, 875
Alw26I	GTCTC	3 cut(s)	246, 802, 835
AlwI	GGATC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	497
Aor13HI	TCCGGA	1 cut(s)	852
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	7 cut(s)	23, 491, 494, 497, 770, 872, 980
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	956
AsuHPI	GGTGA	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	956
BaeGI	GKGCMC	2 cut(s)	883, 970
BanI	GGYRCC	1 cut(s)	532
BbvI	GCAGC	7 cut(s)	10, 484, 503, 506, 782, 884, 992
BccI	CCATC	2 cut(s)	516, 521
BciT130I	CCWGG	2 cut(s)	609, 723
BcoDI	GTCTC	3 cut(s)	246, 802, 835
BfaI	CTAG	3 cut(s)	53, 101, 866
BfoI	RGCGCY	1 cut(s)	290
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	7 cut(s)	24, 492, 495, 498, 771, 873, 981
BlsI	GCNGC	7 cut(s)	25, 493, 496, 499, 772, 874, 982
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	609, 723
Bme18I	GGWCC	1 cut(s)	956
BmgT120I	GGNCC	1 cut(s)	956
BmiI	GGNNCC	2 cut(s)	534, 957
BmrFI	CCNGG	2 cut(s)	609, 723
BmsI	GCATC	4 cut(s)	310, 787, 811, 859
BpuEI	CTTGAG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	721
BsaWI	WCCGGW	2 cut(s)	852, 996
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 88, 727, 728
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	2 cut(s)	303, 371
Bse8I	GATNNNNATC	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	609, 723
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	4 cut(s)	325, 532, 826, 849
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	4 cut(s)	58, 88, 727, 728
BseMI	GCAATG	2 cut(s)	303, 371
BseMII	CTCAG	2 cut(s)	570, 777
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	435
BseSI	GKGCMC	2 cut(s)	883, 970
BseXI	GCAGC	7 cut(s)	10, 484, 503, 506, 782, 884, 992
BseYI	CCCAGC	2 cut(s)	436, 551
BsgI	GTGCAG	2 cut(s)	200, 483
BshFI	GGCC	2 cut(s)	3, 370
BshNI	GGYRCC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	853, 997
BsiWI	CGTACG	1 cut(s)	801
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	4 cut(s)	58, 88, 727, 728
BsmAI	GTCTC	3 cut(s)	246, 802, 835
BsmFI	GGGAC	1 cut(s)	704
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	3, 370
Bsp1286I	GDGCHC	2 cut(s)	883, 970
Bsp13I	TCCGGA	1 cut(s)	852
Bsp143I	GATC	5 cut(s)	61, 640, 646, 705, 1018
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	2 cut(s)	3, 370
BspCNI	CTCAG	2 cut(s)	571, 778
BspEI	TCCGGA	1 cut(s)	852
BspLI	GGNNCC	2 cut(s)	534, 957
BspPI	GGATC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	532
BsrDI	GCAATG	2 cut(s)	303, 371
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	5 cut(s)	61, 640, 646, 705, 1018
Bst2UI	CCWGG	2 cut(s)	609, 723
Bst4CI	ACNGT	4 cut(s)	460, 473, 594, 846
Bst6I	CTCTTC	4 cut(s)	51, 509, 890, 906
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstDEI	CTNAG	2 cut(s)	579, 786
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	4 cut(s)	325, 532, 826, 849
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	5 cut(s)	64, 643, 649, 708, 1021
BstMAI	GTCTC	3 cut(s)	246, 802, 835
BstMBI	GATC	5 cut(s)	61, 640, 646, 705, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 497, 557, 878
BstNI	CCWGG	2 cut(s)	609, 723
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	607, 721
BstSLI	GKGCMC	2 cut(s)	883, 970
BstV1I	GCAGC	7 cut(s)	10, 484, 503, 506, 782, 884, 992
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	3, 370
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	4 cut(s)	325, 532, 826, 849
BtsIMutI	CAGTG	2 cut(s)	207, 444
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	956
Csp6I	GTAC	8 cut(s)	49, 166, 226, 461, 590, 677, 802, 934
CviAII	CATG	3 cut(s)	364, 413, 602
CviQI	GTAC	8 cut(s)	49, 166, 226, 461, 590, 677, 802, 934
DdeI	CTNAG	2 cut(s)	579, 786
DpnI	GATC	5 cut(s)	63, 642, 648, 707, 1020
DpnII	GATC	5 cut(s)	61, 640, 646, 705, 1018
Eam1104I	CTCTTC	4 cut(s)	51, 509, 890, 906
EarI	CTCTTC	4 cut(s)	51, 509, 890, 906
Eco47I	GGWCC	1 cut(s)	956
Eco57I	CTGAAG	3 cut(s)	216, 231, 722
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	956
EcoRII	CCWGG	2 cut(s)	607, 721
FaeI	CATG	3 cut(s)	367, 416, 605
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	3 cut(s)	363, 412, 601
Fnu4HI	GCNGC	7 cut(s)	24, 492, 495, 498, 771, 873, 981
FokI	GGATG	4 cut(s)	332, 539, 833, 836
Fsp4HI	GCNGC	7 cut(s)	24, 492, 495, 498, 771, 873, 981
FspBI	CTAG	3 cut(s)	53, 101, 866
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	7 cut(s)	24, 492, 495, 498, 771, 873, 981
GsaI	CCCAGC	2 cut(s)	440, 555
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	3, 370
HapII	CCGG	2 cut(s)	853, 997
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	367, 416, 605
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	6 cut(s)	8, 14, 265, 478, 757, 790
HpaII	CCGG	2 cut(s)	853, 997
HphI	GGTGA	1 cut(s)	1016
Hpy188I	TCNGA	6 cut(s)	13, 66, 196, 419, 674, 702
Hpy188III	TCNNGA	6 cut(s)	73, 644, 794, 853, 929, 1016
HpyAV	CCTTC	2 cut(s)	206, 824
HpyCH4III	ACNGT	4 cut(s)	460, 473, 594, 846
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 497, 557, 878
HpyF3I	CTNAG	2 cut(s)	579, 786
Hsp92II	CATG	3 cut(s)	367, 416, 605
HspAI	GCGC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	61, 640, 646, 705, 1018
LmnI	GCTCC	2 cut(s)	97, 855
Lsp1109I	GCAGC	7 cut(s)	10, 484, 503, 506, 782, 884, 992
LweI	GCATC	4 cut(s)	310, 787, 811, 859
MaeI	CTAG	3 cut(s)	53, 101, 866
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	5 cut(s)	63, 642, 648, 707, 1020
MboI	GATC	5 cut(s)	61, 640, 646, 705, 1018
MboII	GAAGA	9 cut(s)	68, 113, 209, 338, 496, 715, 752, 877, 923
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	2 cut(s)	883, 970
MluCI	AATT	3 cut(s)	235, 613, 751
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	2 cut(s)	506, 720
MnlI	CCTC	7 cut(s)	50, 52, 215, 360, 413, 416, 567
MroI	TCCGGA	1 cut(s)	852
MseI	TTAA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	853, 997
MspR9I	CCNGG	2 cut(s)	609, 723
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	2 cut(s)	609, 723
MwoI	GCNNNNNNNGC	4 cut(s)	293, 497, 557, 878
NdeII	GATC	5 cut(s)	61, 640, 646, 705, 1018
NlaIII	CATG	3 cut(s)	367, 416, 605
NlaIV	GGNNCC	2 cut(s)	534, 957
NmeAIII	GCCGAG	1 cut(s)	29
NspI	RCATGY	1 cut(s)	605
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	5 cut(s)	8, 14, 265, 757, 790
Pfl23II	CGTACG	1 cut(s)	801
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	7 cut(s)	25, 493, 496, 499, 772, 874, 982
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	956
Psp5II	RGGWCCY	1 cut(s)	956
Psp6I	CCWGG	2 cut(s)	607, 721
PspFI	CCCAGC	2 cut(s)	436, 551
PspGI	CCWGG	2 cut(s)	607, 721
PspLI	CGTACG	1 cut(s)	801
PspN4I	GGNNCC	2 cut(s)	534, 957
PspPI	GGNCC	1 cut(s)	956
PspPPI	RGGWCCY	1 cut(s)	956
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	8 cut(s)	50, 167, 227, 462, 591, 678, 803, 935
RsaNI	GTAC	8 cut(s)	49, 166, 226, 461, 590, 677, 802, 934
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	7 cut(s)	24, 492, 495, 498, 771, 873, 981
Sau3AI	GATC	5 cut(s)	61, 640, 646, 705, 1018
Sau96I	GGNCC	1 cut(s)	956
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	609, 723
SduI	GDGCHC	2 cut(s)	883, 970
SfaNI	GCATC	4 cut(s)	310, 787, 811, 859
SinI	GGWCC	1 cut(s)	956
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	235, 613, 751
SsiI	CCGC	1 cut(s)	736
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	3 cut(s)	53, 101, 866
StyD4I	CCNGG	2 cut(s)	607, 721
TaaI	ACNGT	4 cut(s)	460, 473, 594, 846
TaqI	TCGA	1 cut(s)	625
TasI	AATT	3 cut(s)	235, 613, 751
TatI	WGTACW	3 cut(s)	165, 676, 933
TfiI	GAWTC	5 cut(s)	8, 14, 265, 757, 790
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	214, 451
TseI	GCWGC	7 cut(s)	23, 491, 494, 497, 770, 872, 980
TspDTI	ATGAA	8 cut(s)	354, 496, 560, 675, 702, 752, 838, 876
TspGWI	ACGGA	1 cut(s)	960
TspRI	CASTG	2 cut(s)	214, 451
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	956
XagI	CCTNNNNNAGG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	3 cut(s)	53, 101, 866
ZrmI	AGTACT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.