Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004269.1

Orthogroup ID

OG0003517

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 663

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 428 bp

atggcgacccttccatccacccattgctgctgtacttactcctcctcatcatcagcgtcgtatttttccgtacacagaagcctccagagggtggccgtttctccgagtccgcaaagtttcgtctccgccaaggtttctctgcagtctcaatccgtttcgcagcaaaatgttgtcagcatgcaagatgtggctccagcagtgaagcctgttgagaatgaaactgctttcaagaaattgaaagacgggttgctgtcagctacgtttgggtctgtgtctgtggaggaaagtaaagacgcaagtgggtttagttttgaagaatctgagtctactgtgagtattactgtggtcggagcatctggggaccttgcaaagaagaagatattcccggctcttttcgcactttattatgagggttgcctccctaaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

143

Amino Acids

15.14

Weight (kDa)

6.71

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24280 AT5G13110
fragaria_vesca	FvH4_3g22211 FvH4_3g44040 FvH4_4g23350 FvH4_4g23350
malus_domestica	MD04G1016000.v1.1 MD13G1122800.v1.1 MD16G1123600.v1.1
prunus_persica	Prupe.1G222100_v2.0.a1
pyrus_communis	pycom13g10700 pycom13g10710 pycom16g10560
rosa_chinensis	RchiOBHm_Chr4g0429721
rosa_laevigata	RLG00000007047
rosa_multiflora	Rmu_sc0001935.1_g000013 Rmu_sc0004269.1_g000001 Rmu_sc0010349.1_g000001 Rmu_sc0012016.1_g000005 Rmu_ssc0000482.1_g000002
rosa_roxburghii	Rroxscaffold_5G00371510 Rroxscaffold_5G00387410
rosa_rugosa	Rorug04G0237600 Rorug04G0237700
rosa_samantha	Rh1AG073100 Rh4AG294000 Rh4BG300000 Rh4CG315600 Rh4DG297100 Rh5AG056000 Rh5AG245400 Rh6BG154200 Rh6DG139400
rosa_wichuraiana	Rw4G025440 Rw5G047220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	326
AciI	CCGC	2 cut(s)	110, 126
AcoI	YGGCCR	1 cut(s)	93
AfaI	GTAC	2 cut(s)	34, 72
AfiI	CCNNNNNNNGG	2 cut(s)	88, 91
AgsI	TTSAA	3 cut(s)	229, 238, 314
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	127, 150
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	27, 160
Asp700I	GAANNNNTTC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	14, 172
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	127, 150
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	28, 161
BlsI	GCNGC	2 cut(s)	29, 162
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	192, 362
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	362
BpmI	CTGGAG	2 cut(s)	68, 177
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 91
Bse3DI	GCAATG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	88, 91
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	2 cut(s)	14, 172
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	88, 91
BsmAI	GTCTC	2 cut(s)	127, 150
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	95
BspACI	CCGC	2 cut(s)	110, 126
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	192, 362
BspMAI	CTGCAG	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	331, 343
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	127, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	14, 172
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	2 cut(s)	45, 302
Csp6I	GTAC	2 cut(s)	33, 71
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	6 cut(s)	81, 95, 191, 205, 257, 389
CviKI_1	RGCY	6 cut(s)	81, 95, 191, 205, 257, 389
CviQI	GTAC	2 cut(s)	33, 71
DdeI	CTNAG	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	179, 408
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	2 cut(s)	28, 161
Fsp4HI	GCNGC	2 cut(s)	28, 161
GluI	GCNGC	2 cut(s)	28, 161
GsuI	CTGGAG	2 cut(s)	68, 177
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	386
HgaI	GACGC	2 cut(s)	45, 302
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	3 cut(s)	106, 317, 323
HpaII	CCGG	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	73, 327
Hpy188I	TCNGA	3 cut(s)	105, 322, 350
Hpy188III	TCNNGA	2 cut(s)	85, 229
Hpy8I	GTNNAC	2 cut(s)	73, 327
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	331, 343
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	142, 181, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	196, 350
LpnPI	CCDG	5 cut(s)	98, 207, 219, 342, 399
Lsp1109I	GCAGC	2 cut(s)	14, 172
LweI	GCATC	1 cut(s)	362
MaeII	ACGT	1 cut(s)	260
MboII	GAAGA	3 cut(s)	326, 385, 388
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	115, 332
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	7 cut(s)	52, 55, 81, 92, 274, 403, 428
MroXI	GAANNNNTTC	1 cut(s)	380
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	1 cut(s)	386
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	192, 362
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	29, 162
PleI	GAGTC	2 cut(s)	114, 331
PpsI	GAGTC	2 cut(s)	114, 331
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	192, 362
PspPI	GGNCC	1 cut(s)	361
PspPPI	RGGWCCY	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	144
RsaI	GTAC	2 cut(s)	34, 72
RsaNI	GTAC	2 cut(s)	33, 71
SatI	GCNGC	2 cut(s)	28, 161
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	2 cut(s)	115, 332
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	4 cut(s)	135, 259, 263, 366
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	361
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	2 cut(s)	110, 126
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	331, 343
TaiI	ACGT	1 cut(s)	263
TasI	AATT	1 cut(s)	233
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	2 cut(s)	27, 160
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	2 cut(s)	58, 142
TspRI	CASTG	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	361
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.