Rorug04G0237600

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
40415005 .. 40420194
5190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0237600.1

Sequence Viewer

Length: 1296 bp
ATGGCACAGATTTTGGCTCCAACTTCACAATGGCAGATGAGAATTACAAAGAGCTCAATTCCTTCTAGTCCTATGACAGGAAAGATGTGGAGTTCTCTAGTGTTGAAACAGAACAAGAAAGGAGCTGCTAAAAGCTCTAAGTTCAGAGTTTTTGCCTCCAAGTATGAAGACTATACCATAAACAGGGTCGAGGGTTTACTAAATTTGGACCTTACTCCATACACGGACAAGATTATTGCCGAGTACATTTGGATCGGAGGGTCTGGTATCGATGTGCGTAGCAAGTCAAGGACGATATCAAAGCCTGTTGAACATCCGTCTGAGCTTCCAAAGTGGAACTATGATGGATCAAGTACTGGACAGGCACCCGGTGAAGACAGTGAAGTGATCTTATACCCTCAAGCGATATTCAAGGACCCCTTTCGTGGTGGCAACAATATATTGGTAATTTGTGACGCATACACGCCCCAAGGCGAGCCTATCCCAACAAACAAACGGCACAAGGCCGCTCAGGTTTTTAGCAACCAGAAGGTTATAGATGAAGTTCCATGGTATGGGATAGAGCAAGAGTACACATTACTTCAATCCAATGTGAAATGGCCTTTAGGTTGGCCAGTTGGAGGTTATCCTGGTCCTCAGGGTCCCTATTACTGTGGTGCTGGTGCAGACAAGTCGTTTGGCCGTGACATTTCAGATGCTCATTACAAGGCTTGTCTATATGCTGGAATCAACATCAGTGGAACCAATGGGGAAGTTATGCCTGGCCAGTGGGAATTTCAAGTTGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGGCTGCAAGATACATTCTTGAGAGGATCACTGAACAAGCAGGTGTTGTTCTCACTCTTGATCCAAAACCAATTATGGGTGACTGGAATGGTGCTGGATGCCACACCAATTACAGTACAAAGAGCATGAGGGAAGAAGGAGGCTTCGAAATTATTAAGAAGGCAATTTTGAATCTGTCACTTCGCCACACAGAGCATATTAGTGCCTATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAAACAGCCAGCATTAATCAATTTTCTTGGGGAGTGGCTAATCGCGGTGCCTCAATCCGTGTTGGTCGTGACACTGAGAAGCAAGGAAAAGGTTATCTGGAGGACCGCCGTCCAGCTTCAAACATGGACCCTTACACTGTGACCGCACTGCTGGCAGAAACTACACTCTTGTGGGAGCCAACACTTGAGGCTGAAGCTCTTGCTGCTCAAAAACTAGCATTGAATGTCTGA

Protein Analysis

431

Amino Acids

47.59

Weight (kDa)

6.73

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gln-synt_N PF03951 104 - 156 1.7e-08 Glutamine synthetase, beta-Grasp domain
Gln-synt_C PF00120 171 - 406 5.5e-14 Glutamine synthetase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 851
Acc36I ACCTGC 1 cut(s) 851
AccB1I GGYRCC 2 cut(s) 364, 1112
AccB7I CCANNNNNTGG 1 cut(s) 554
AccBSI CCGCTC 1 cut(s) 509
AccII CGCG 1 cut(s) 1110
AciI CCGC 4 cut(s) 507, 1110, 1171, 1209
AclWI GGATC 4 cut(s) 260, 355, 854, 875
AcoI YGGCCR 3 cut(s) 611, 679, 763
AcsI RAATTY 2 cut(s) 202, 773
AcuI CTGAAG 1 cut(s) 1278
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 4 cut(s) 245, 355, 572, 937
AfiI CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
AgsI TTSAA 9 cut(s) 106, 311, 412, 584, 779, 803, 991, 1185, 1288
AjnI CCWGG 2 cut(s) 628, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AleI CACNNNNGTG 1 cut(s) 1234
AluBI AGCT 7 cut(s) 54, 125, 135, 325, 806, 1181, 1262
AluI AGCT 7 cut(s) 54, 125, 135, 325, 806, 1181, 1262
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 4 cut(s) 260, 355, 854, 875
AoxI GGCC 5 cut(s) 504, 599, 611, 679, 763
ApeKI GCWGC 3 cut(s) 125, 824, 1268
ApoI RAATTY 2 cut(s) 202, 773
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AseI ATTAAT 1 cut(s) 1080
AspS9I GGNCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 383, 911
AsuII TTCGAA 1 cut(s) 966
AvaII GGWCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
AxyI CCTNAGG 1 cut(s) 636
BalI TGGCCA 2 cut(s) 613, 765
BanI GGYRCC 2 cut(s) 364, 1112
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 174, 381
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 112, 811, 1255
BccI CCATC 1 cut(s) 338
BceAI ACGGC 3 cut(s) 512, 666, 1158
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BciT130I CCWGG 2 cut(s) 630, 762
BcnI CCSGG 1 cut(s) 369
BfaI CTAG 4 cut(s) 66, 98, 789, 1280
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 4 cut(s) 126, 507, 825, 1269
BlsI GCNGC 4 cut(s) 127, 508, 826, 1270
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 3 cut(s) 369, 630, 762
Bme18I GGWCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
BmgT120I GGNCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
BmiI GGNNCC 9 cut(s) 18, 366, 417, 642, 643, 742, 1114, 1194, 1242
BmrFI CCNGG 3 cut(s) 369, 630, 762
BmsI GCATC 2 cut(s) 685, 908
BoxI GACNNNNGTC 1 cut(s) 1173
BpiI GAAGAC 2 cut(s) 174, 381
BpmI CTGGAG 2 cut(s) 828, 1184
Bpu10I CCTNAGC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 966
BpuEI CTTGAG 3 cut(s) 384, 860, 1271
BpuMI CCSGG 1 cut(s) 369
Bsa29I ATCGAT 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 469, 548
Bsc4I CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
Bse1I ACTGG 4 cut(s) 361, 614, 766, 908
Bse21I CCTNAGG 1 cut(s) 636
BseBI CCWGG 2 cut(s) 630, 762
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 469, 548
BseGI GGATG 2 cut(s) 313, 923
BseLI CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
BseMII CTCAG 4 cut(s) 312, 524, 650, 1131
BseNI ACTGG 4 cut(s) 361, 614, 766, 908
BseXI GCAGC 3 cut(s) 112, 811, 1255
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 1110
BshFI GGCC 5 cut(s) 506, 601, 613, 681, 765
BshNI GGYRCC 2 cut(s) 364, 1112
BshVI ATCGAT 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 7 cut(s) 77, 183, 425, 554, 620, 794, 896
BsmFI GGGAC 1 cut(s) 627
BsnI GGCC 5 cut(s) 506, 601, 613, 681, 765
Bsp119I TTCGAA 1 cut(s) 966
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 6 cut(s) 252, 347, 387, 811, 846, 880
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 4 cut(s) 507, 1110, 1171, 1209
BspANI GGCC 5 cut(s) 506, 601, 613, 681, 765
BspCNI CTCAG 4 cut(s) 313, 523, 649, 1132
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 1110
BspLI GGNNCC 9 cut(s) 18, 366, 417, 642, 643, 742, 1114, 1194, 1242
BspMI ACCTGC 1 cut(s) 851
BspPI GGATC 4 cut(s) 260, 355, 854, 875
BspT104I TTCGAA 1 cut(s) 966
BspT107I GGYRCC 2 cut(s) 364, 1112
BsrBI CCGCTC 1 cut(s) 509
BsrI ACTGG 4 cut(s) 361, 614, 766, 908
BssECI CCNNGG 2 cut(s) 469, 548
BssMI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
BssT1I CCWWGG 2 cut(s) 469, 548
Bst2UI CCWGG 2 cut(s) 630, 762
Bst4CI ACNGT 4 cut(s) 380, 653, 935, 1204
BstBI TTCGAA 1 cut(s) 966
BstC8I GCNNGC 3 cut(s) 476, 1075, 1218
BstDEI CTNAG 5 cut(s) 138, 321, 510, 636, 1140
BstDSI CCRYGG 1 cut(s) 548
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 313, 923
BstFNI CGCG 1 cut(s) 1110
BstKTI GATC 6 cut(s) 255, 350, 390, 814, 849, 883
BstMBI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
BstMWI GCNNNNNNNGC 2 cut(s) 1217, 1268
BstNI CCWGG 2 cut(s) 630, 762
BstPAI GACNNNNGTC 1 cut(s) 1173
BstSCI CCNGG 3 cut(s) 367, 628, 760
BstUI CGCG 1 cut(s) 1110
BstV1I GCAGC 3 cut(s) 112, 811, 1255
BstV2I GAAGAC 2 cut(s) 174, 381
Bsu15I ATCGAT 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 5 cut(s) 506, 601, 613, 681, 765
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 548
BtsCI GGATG 2 cut(s) 313, 923
BtsI GCAGTG 1 cut(s) 1211
BtsIMutI CAGTG 7 cut(s) 385, 742, 773, 849, 1137, 1200, 1211
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 3 cut(s) 476, 1075, 1218
Cfr13I GGNCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 464
Csp6I GTAC 4 cut(s) 244, 354, 571, 936
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviAII CATG 4 cut(s) 549, 946, 1064, 1189
CviQI GTAC 4 cut(s) 244, 354, 571, 936
DdeI CTNAG 5 cut(s) 138, 321, 510, 636, 1140
DpnI GATC 6 cut(s) 254, 349, 389, 813, 848, 882
DpnII GATC 6 cut(s) 252, 347, 387, 811, 846, 880
DraIII CACNNNGTG 1 cut(s) 371
EaeI YGGCCR 3 cut(s) 611, 679, 763
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 469, 548
Eco24I GRGCYC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 1278
Eco81I CCTNAGG 1 cut(s) 636
EcoICRI GAGCTC 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 415, 641
EcoRII CCWGG 2 cut(s) 628, 760
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 2 cut(s) 469, 548
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 469, 548
FaeI CATG 4 cut(s) 552, 949, 1067, 1192
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 627
FatI CATG 4 cut(s) 548, 945, 1063, 1188
Fnu4HI GCNGC 4 cut(s) 126, 507, 825, 1269
FokI GGATG 2 cut(s) 300, 930
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 4 cut(s) 126, 507, 825, 1269
FspBI CTAG 4 cut(s) 66, 98, 789, 1280
GluI GCNGC 4 cut(s) 126, 507, 825, 1269
GsuI CTGGAG 2 cut(s) 828, 1184
HaeIII GGCC 5 cut(s) 506, 601, 613, 681, 765
HapII CCGG 1 cut(s) 369
HgaI GACGC 1 cut(s) 464
Hin1II CATG 4 cut(s) 552, 949, 1067, 1192
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HinfI GANTC 2 cut(s) 726, 991
HpaII CCGG 1 cut(s) 369
HphI GGTGA 2 cut(s) 383, 911
Hpy166II GTNNAC 3 cut(s) 197, 573, 1053
Hpy188I TCNGA 5 cut(s) 146, 257, 322, 694, 1295
Hpy188III TCNNGA 4 cut(s) 839, 878, 1133, 1163
Hpy8I GTNNAC 3 cut(s) 197, 573, 1053
HpyAV CCTTC 6 cut(s) 72, 523, 950, 973, 1028, 1041
HpyCH4III ACNGT 4 cut(s) 380, 653, 935, 1204
HpyCH4V TGCA 2 cut(s) 665, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 1217, 1268
HpyF3I CTNAG 5 cut(s) 138, 321, 510, 636, 1140
Hsp92II CATG 4 cut(s) 552, 949, 1067, 1192
KflI GGGWCCC 1 cut(s) 641
Kzo9I GATC 6 cut(s) 252, 347, 387, 811, 846, 880
LmnI GCTCC 3 cut(s) 22, 122, 1240
Lsp1109I GCAGC 3 cut(s) 112, 811, 1255
LweI GCATC 2 cut(s) 685, 908
MaeI CTAG 4 cut(s) 66, 98, 789, 1280
MaeIII GTNAC 6 cut(s) 452, 683, 899, 996, 1133, 1204
MalI GATC 6 cut(s) 254, 349, 389, 813, 848, 882
MbiI CCGCTC 1 cut(s) 509
MboI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
MboII GAAGA 3 cut(s) 179, 386, 965
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 2 cut(s) 613, 765
MluNI TGGCCA 2 cut(s) 613, 765
MmeI TCCRAC 2 cut(s) 44, 598
Mox20I TGGCCA 2 cut(s) 613, 765
MscI TGGCCA 2 cut(s) 613, 765
MseI TTAA 2 cut(s) 975, 1080
MslI CAYNNNNRTG 2 cut(s) 1020, 1234
Msp20I TGGCCA 2 cut(s) 613, 765
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 3 cut(s) 369, 630, 762
MvaI CCWGG 2 cut(s) 630, 762
MvnI CGCG 1 cut(s) 1110
MwoI GCNNNNNNNGC 2 cut(s) 1217, 1268
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 548
NdeII GATC 6 cut(s) 252, 347, 387, 811, 846, 880
NlaIII CATG 4 cut(s) 552, 949, 1067, 1192
NlaIV GGNNCC 9 cut(s) 18, 366, 417, 642, 643, 742, 1114, 1194, 1242
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 6 cut(s) 452, 683, 899, 996, 1133, 1204
NspV TTCGAA 1 cut(s) 966
OliI CACNNNNGTG 1 cut(s) 1234
PaqCI CACCTGC 1 cut(s) 851
PfeI GAWTC 2 cut(s) 726, 991
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 4 cut(s) 127, 508, 826, 1270
PpuMI RGGWCCY 2 cut(s) 415, 641
PshAI GACNNNNGTC 1 cut(s) 1173
PshBI ATTAAT 1 cut(s) 1080
Psp124BI GAGCTC 1 cut(s) 56
Psp5II RGGWCCY 2 cut(s) 415, 641
Psp6I CCWGG 2 cut(s) 628, 760
PspGI CCWGG 2 cut(s) 628, 760
PspN4I GGNNCC 9 cut(s) 18, 366, 417, 642, 643, 742, 1114, 1194, 1242
PspPI GGNCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
PspPPI RGGWCCY 2 cut(s) 415, 641
RsaI GTAC 4 cut(s) 245, 355, 572, 937
RsaNI GTAC 4 cut(s) 244, 354, 571, 936
RseI CAYNNNNRTG 2 cut(s) 1020, 1234
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 975, 1080
SatI GCNGC 4 cut(s) 126, 507, 825, 1269
Sau3AI GATC 6 cut(s) 252, 347, 387, 811, 846, 880
Sau96I GGNCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 3 cut(s) 369, 630, 762
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 2 cut(s) 685, 908
SfuI TTCGAA 1 cut(s) 966
SinI GGWCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
SmiMI CAYNNNNRTG 2 cut(s) 1020, 1234
SmlI CTYRAG 3 cut(s) 399, 839, 1250
SmoI CTYRAG 3 cut(s) 399, 839, 1250
SsiI CCGC 4 cut(s) 507, 1110, 1171, 1209
SspMI CTAG 4 cut(s) 66, 98, 789, 1280
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 367, 628, 760
StyI CCWWGG 2 cut(s) 469, 548
TaaI ACNGT 4 cut(s) 380, 653, 935, 1204
TaqI TCGA 3 cut(s) 189, 270, 966
TatI WGTACW 4 cut(s) 243, 353, 570, 935
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 2 cut(s) 726, 991
Tru1I TTAA 2 cut(s) 975, 1080
Tru9I TTAA 2 cut(s) 975, 1080
TscAI CASTG 7 cut(s) 385, 742, 773, 856, 1144, 1207, 1218
TseFI GTSAC 6 cut(s) 452, 683, 899, 996, 1133, 1204
TseI GCWGC 3 cut(s) 125, 824, 1268
Tsp45I GTSAC 6 cut(s) 452, 683, 899, 996, 1133, 1204
TspDTI ATGAA 3 cut(s) 180, 555, 1080
TspGWI ACGGA 3 cut(s) 239, 306, 1112
TspRI CASTG 7 cut(s) 385, 742, 773, 856, 1144, 1207, 1218
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 7 cut(s) 208, 415, 632, 641, 785, 1168, 1192
VspI ATTAAT 1 cut(s) 1080
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 2 cut(s) 202, 773
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 4 cut(s) 66, 98, 789, 1280
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.