Rroxscaffold_2G00084300

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001545
Physical Location & Seq
Reverse (-)
6802153 .. 6803236
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084300.1

Sequence Viewer

Length: 393 bp
ATGACCAACAACGAAGAATTCAAATGGCTGCATCTAGAAGGATTCATATGGGTTTCCCACGTACCACGAAGGTCGTTTGATTTTGGATCATCGAATGAGTGCATCAACCTACAGGCTTCGATTGGAAGTGACCGCCCAGGCTTAAGGGTGCTCAAGTGTGGGCTTCCTCTTCTATATGAACGTGATGCGCAAGAATTTGAGAAGACCATTAATTATGCATTGCAGGACCTCAATAAACTTCTCCAACTCTGTCCGCATGTCCCATCGCTGAGTGTGGTTATGCGCAGCCACTTGTTGATCGAGCCTTCGGAACCTCTTCAGTTGGTTCCACTGCCCCCAACCGCCCACACCACCACTCCCGCCGGCTATTCCTCTGCATTTTCAGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

130

Amino Acids

14.55

Weight (kDa)

5.91

Isoelectric Point (pI)

64.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 189, 284
AciI CCGC 4 cut(s) 133, 254, 342, 360
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 2 cut(s) 17, 194
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 1 cut(s) 63
AflII CTTAAG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 28, 285, 386
ApoI RAATTY 2 cut(s) 17, 194
AseI ATTAAT 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 190, 285
AspS9I GGNCC 1 cut(s) 226
AvaII GGWCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 15, 297, 373
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 142
BisI GCNGC 3 cut(s) 29, 286, 387
BlsI GCNGC 3 cut(s) 30, 287, 388
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 312, 327
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 3 cut(s) 40, 111, 175
BpiI GAAGAC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bse118I RCCGGY 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 15, 297, 373
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 86, 297
BspACI CCGC 4 cut(s) 133, 254, 342, 360
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 312, 327
BspPI GGATC 1 cut(s) 94
BspTI CTTAAG 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 86, 297
Bst2UI CCWGG 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 174, 321
BstAFI CTTAAG 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 269
BstHHI GCGC 2 cut(s) 190, 285
BstKTI GATC 2 cut(s) 89, 300
BstMBI GATC 2 cut(s) 86, 297
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 3 cut(s) 15, 297, 373
BstV2I GAAGAC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 249
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 2 cut(s) 190, 285
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 62
CviAII CATG 2 cut(s) 257, 390
CviJI RGCY 8 cut(s) 28, 116, 141, 163, 288, 304, 366, 386
CviKI_1 RGCY 8 cut(s) 28, 116, 141, 163, 288, 304, 366, 386
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 269
DpnI GATC 2 cut(s) 88, 299
DpnII GATC 2 cut(s) 86, 297
Eam1104I CTCTTC 2 cut(s) 174, 321
EarI CTCTTC 2 cut(s) 174, 321
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 2 cut(s) 260, 393
FaiI YATR 8 cut(s) 47, 49, 175, 177, 216, 258, 281, 391
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 256, 389
FauI CCCGC 1 cut(s) 367
FauNDI CATATG 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 29, 286, 387
Fsp4HI GCNGC 3 cut(s) 29, 286, 387
FspBI CTAG 1 cut(s) 35
FspI TGCGCA 2 cut(s) 189, 284
GlaI GCGC 2 cut(s) 189, 284
GluI GCNGC 3 cut(s) 29, 286, 387
HapII CCGG 1 cut(s) 363
HhaI GCGC 2 cut(s) 190, 285
Hin1II CATG 2 cut(s) 260, 393
Hin6I GCGC 2 cut(s) 188, 283
HinP1I GCGC 2 cut(s) 188, 283
HinfI GANTC 1 cut(s) 42
HpaII CCGG 1 cut(s) 363
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 32, 63, 315
HpyCH4IV ACGT 2 cut(s) 60, 181
HpyCH4V TGCA 6 cut(s) 31, 102, 218, 223, 377, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 2 cut(s) 60, 181
Hsp92II CATG 2 cut(s) 260, 393
HspAI GCGC 2 cut(s) 188, 283
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Kzo9I GATC 2 cut(s) 86, 297
LpnPI CCDG 5 cut(s) 98, 123, 150, 209, 376
Lsp1109I GCAGC 3 cut(s) 15, 297, 373
LweI GCATC 3 cut(s) 40, 111, 175
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 60, 181
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 88, 299
MboI GATC 2 cut(s) 86, 297
MboII GAAGA 4 cut(s) 26, 161, 214, 308
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 17, 194, 211
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 4 cut(s) 177, 239, 324, 382
Mph1103I ATGCAT 1 cut(s) 220
MroNI GCCGGC 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 2 cut(s) 143, 210
MspA1I CMGCKG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 142
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 383
NaeI GCCGGC 1 cut(s) 364
NdeI CATATG 1 cut(s) 47
NdeII GATC 2 cut(s) 86, 297
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 2 cut(s) 260, 393
NlaIV GGNNCC 2 cut(s) 312, 327
NmuCI GTSAC 1 cut(s) 128
NsbI TGCGCA 2 cut(s) 189, 284
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 30, 287, 388
Ppu21I YACGTR 1 cut(s) 61
PpuMI RGGWCCY 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 312, 327
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 143, 210
SatI GCNGC 3 cut(s) 29, 286, 387
Sau3AI GATC 2 cut(s) 86, 297
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 63, 74, 111, 184, 231, 316, 388
SfaNI GCATC 3 cut(s) 40, 111, 175
SfcI CTRYAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 142, 152
SmoI CTYRAG 2 cut(s) 142, 152
Sse9I AATT 3 cut(s) 17, 194, 211
SsiI CCGC 4 cut(s) 133, 254, 342, 360
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 136
TaiI ACGT 2 cut(s) 63, 184
TaqI TCGA 3 cut(s) 92, 119, 300
TasI AATT 3 cut(s) 17, 194, 211
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 2 cut(s) 143, 210
Tru9I TTAA 2 cut(s) 143, 210
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 28, 285, 386
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 34, 192
TspRI CASTG 1 cut(s) 336
Vha464I CTTAAG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 226
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 2 cut(s) 17, 194
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.