Rroxscaffold_7G00216530

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
67169573 .. 67170466
894 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00216530.1

Sequence Viewer

Length: 348 bp
ATGCAGACCGCAGTGGAGGTGGCTCGGCGGACGGTGGCGGAGGAGGGGTATCTAGATCAGTTAAATAATCAGTATGACCTCTTGGAGGCTTCATTAGCCAGCGAAAGCCGAGGGTTGTTTGCTGAAGAGTGTGGTCTCCGTCTTGTCTACCTGCATGATGAGCAAGAGTTTAAGGATCTGTGTATCTACATGAACTTGTTGCTGGACAAAAAATCAGAAAGATTGGAAGAACATGAAGCTCCCAAGAAGGGTAAACAAGTTCTAGAATACCCTGAACTTGAGATTGAATGGGGATCTAATGCAATGTGGAATCTGGAGATCTACGACCCAAAAACGAGACATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.46

Weight (kDa)

4.66

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 147
AciI CCGC 3 cut(s) 9, 28, 38
AclWI GGATC 2 cut(s) 183, 301
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 85, 248
AgsI TTSAA 1 cut(s) 287
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 2 cut(s) 140, 331
AlwI GGATC 2 cut(s) 183, 301
BcoDI GTCTC 2 cut(s) 140, 331
BfaI CTAG 2 cut(s) 53, 263
BfuAI ACCTGC 1 cut(s) 159
BglII AGATCT 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 248
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 85, 248
BseMI GCAATG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 85, 248
BsmAI GTCTC 2 cut(s) 140, 331
Bso31I GGTCTC 1 cut(s) 140
Bsp143I GATC 4 cut(s) 55, 175, 293, 318
BspACI CCGC 3 cut(s) 9, 28, 38
BspHI TCATGA 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 2 cut(s) 183, 301
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 4 cut(s) 55, 175, 293, 318
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 100
BstENI CCTNNNNNAGG 1 cut(s) 83
BstKTI GATC 4 cut(s) 58, 178, 296, 321
BstMAI GTCTC 2 cut(s) 140, 331
BstMBI GATC 4 cut(s) 55, 175, 293, 318
BstMWI GCNNNNNNNGC 2 cut(s) 95, 160
BstX2I RGATCY 3 cut(s) 175, 293, 318
BstYI RGATCY 3 cut(s) 175, 293, 318
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 100
CciI TCATGA 1 cut(s) 344
CviAII CATG 4 cut(s) 155, 190, 233, 345
CviJI RGCY 5 cut(s) 23, 89, 98, 108, 239
CviKI_1 RGCY 5 cut(s) 23, 89, 98, 108, 239
DpnI GATC 4 cut(s) 57, 177, 295, 320
DpnII GATC 4 cut(s) 55, 175, 293, 318
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 2 cut(s) 43, 53
Eco31I GGTCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 144
EcoNI CCTNNNNNAGG 1 cut(s) 83
FaeI CATG 4 cut(s) 158, 193, 236, 348
FaiI YATR 5 cut(s) 75, 156, 191, 234, 346
FatI CATG 4 cut(s) 154, 189, 232, 344
FblI GTMKAC 1 cut(s) 147
FspBI CTAG 2 cut(s) 53, 263
GsuI CTGGAG 1 cut(s) 335
Hin1II CATG 4 cut(s) 158, 193, 236, 348
HinfI GANTC 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 148, 254
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 4 cut(s) 53, 263, 314, 345
Hpy8I GTNNAC 2 cut(s) 148, 254
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 4, 154, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 160
Hsp92II CATG 4 cut(s) 158, 193, 236, 348
Kzo9I GATC 4 cut(s) 55, 175, 293, 318
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 112, 164, 188, 285, 299
MaeI CTAG 2 cut(s) 53, 263
MalI GATC 4 cut(s) 57, 177, 295, 320
MboI GATC 4 cut(s) 55, 175, 293, 318
MboII GAAGA 2 cut(s) 137, 239
MflI RGATCY 3 cut(s) 175, 293, 318
MnlI CCTC 6 cut(s) 10, 34, 37, 79, 89, 104
MseI TTAA 2 cut(s) 62, 171
MwoI GCNNNNNNNGC 2 cut(s) 95, 160
NdeII GATC 4 cut(s) 55, 175, 293, 318
NlaIII CATG 4 cut(s) 158, 193, 236, 348
NmeAIII GCCGAG 2 cut(s) 4, 134
PagI TCATGA 1 cut(s) 344
PfeI GAWTC 1 cut(s) 310
PsuI RGATCY 3 cut(s) 175, 293, 318
SaqAI TTAA 2 cut(s) 62, 171
Sau3AI GATC 4 cut(s) 55, 175, 293, 318
SetI ASST 4 cut(s) 21, 81, 153, 241
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SsiI CCGC 3 cut(s) 9, 28, 38
SspMI CTAG 2 cut(s) 53, 263
TaaI ACNGT 1 cut(s) 34
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 62, 171
Tru9I TTAA 2 cut(s) 62, 171
TscAI CASTG 1 cut(s) 18
TspDTI ATGAA 4 cut(s) 81, 206, 249, 333
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 83
XbaI TCTAGA 2 cut(s) 52, 262
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 53, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.