Rmu_co8402911.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8402911.1
OG0001545
Physical Location & Seq
Reverse (-)
1 .. 859
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8402911.1_g000001.1.cds

Sequence Viewer

Length: 724 bp
atggaagagtttaagcagaacatattgcactgtatgacctcgttctcttgcaataaaggagatgacaagcaatgccttgcacgtgaatgccctgcaggtgatgcaggatcatcaagcactcctagcagcttcattgtggaacctcatcttgaaagattagaatggctgaattacaagaaatggtactttgatcaccactcaatattcaatttgtgtttcccatcaagcgtaaatctagagtggttgggcgatcaaatcagtggctcaaccgtgacaatcccgctaccaccaaatctaaacagagatagtgattggataggattggctgtatgtgcatacttctcggtcatggagcatccgactgacaaccttgacacttcggacattcaagtaatttcccaccacctgatatgtcatttggaatcagagagaggcagtctagaatctctccatgactactgcaccaccaatgaagaattcatgtggttgcatcttggaggattcatttggctatcctatataccacgagcgtggttttcagatcagttgaatgaatgcggtgttctggcggcttcaattgcaagtgatcacaaagtatttagtgtgcacatgtgtgggcttcatcttatacatcagcgtgatgaggaagagtttaaacagaccctagtgcattatatggcgttgtcgtcagataataaagggaaaaataagcaataccatcacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

241

Amino Acids

27.65

Weight (kDa)

5.38

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 86
AciI CCGC 3 cut(s) 281, 558, 569
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 476
AcvI CACGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 5 cut(s) 152, 208, 389, 550, 576
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AleI CACNNNNGTG 2 cut(s) 529, 612
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw21I GWGCWC 1 cut(s) 609
Alw44I GTGCAC 1 cut(s) 605
AlwI GGATC 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 605
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 110, 185
BaeGI GKGCMC 1 cut(s) 609
BauI CACGAG 1 cut(s) 525
BbrPI CACGTG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BclI TGATCA 2 cut(s) 190, 586
BfaI CTAG 4 cut(s) 123, 236, 440, 665
BfmI CTRYAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 127, 570
BlsI GCNGC 2 cut(s) 128, 571
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 3 cut(s) 91, 364, 499
BsaAI YACGTR 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 77
BseGI GGATG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 609
BsmI GAATGC 2 cut(s) 92, 560
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 5 cut(s) 107, 190, 250, 541, 586
BspACI CCGC 3 cut(s) 281, 558, 569
BspLI GGNNCC 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 77
BssMI GATC 5 cut(s) 107, 190, 250, 541, 586
BssSI CACGAG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 32, 271
Bst6I CTCTTC 1 cut(s) 642
BstAPI GCANNNNNTGC 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 83
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 5 cut(s) 110, 193, 253, 544, 589
BstMBI GATC 5 cut(s) 107, 190, 250, 541, 586
BstMWI GCNNNNNNNGC 4 cut(s) 101, 123, 332, 578
BstNSI RCATGY 1 cut(s) 613
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 609
BstV1I GCAGC 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 28, 265
BveI ACCTGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 349, 452, 481, 610
CviJI RGCY 7 cut(s) 129, 166, 264, 326, 511, 572, 619
CviKI_1 RGCY 7 cut(s) 129, 166, 264, 326, 511, 572, 619
CviQI GTAC 1 cut(s) 184
DpnI GATC 5 cut(s) 109, 192, 252, 543, 588
DpnII GATC 5 cut(s) 107, 190, 250, 541, 586
DraI TTTAAA 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco72I CACGTG 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 476
FaeI CATG 4 cut(s) 352, 455, 484, 613
FatI CATG 4 cut(s) 348, 451, 480, 609
FauI CCCGC 1 cut(s) 288
FbaI TGATCA 2 cut(s) 190, 586
Fnu4HI GCNGC 2 cut(s) 127, 570
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 127, 570
FspBI CTAG 4 cut(s) 123, 236, 440, 665
GluI GCNGC 2 cut(s) 127, 570
Hin1II CATG 4 cut(s) 352, 455, 484, 613
HinfI GANTC 3 cut(s) 422, 443, 501
HphI GGTGA 2 cut(s) 110, 185
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 5 cut(s) 360, 382, 427, 541, 691
Hpy188III TCNNGA 3 cut(s) 149, 236, 440
Hpy8I GTNNAC 1 cut(s) 607
HpyCH4III ACNGT 2 cut(s) 32, 271
HpyCH4IV ACGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 123, 332, 578
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 4 cut(s) 352, 455, 484, 613
Ksp22I TGATCA 2 cut(s) 190, 586
Kzo9I GATC 5 cut(s) 107, 190, 250, 541, 586
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 5 cut(s) 81, 90, 105, 419, 551
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 3 cut(s) 91, 364, 499
MaeI CTAG 4 cut(s) 123, 236, 440, 665
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 271
MalI GATC 5 cut(s) 109, 192, 252, 543, 588
MboI GATC 5 cut(s) 107, 190, 250, 541, 586
MboII GAAGA 3 cut(s) 17, 485, 659
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 5 cut(s) 169, 208, 393, 476, 576
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 5 cut(s) 49, 153, 425, 491, 637
MseI TTAA 2 cut(s) 12, 654
MslI CAYNNNNRTG 4 cut(s) 85, 529, 612, 636
MssI GTTTAAAC 1 cut(s) 655
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 2 cut(s) 92, 560
MwoI GCNNNNNNNGC 4 cut(s) 101, 123, 332, 578
NdeII GATC 5 cut(s) 107, 190, 250, 541, 586
NlaIII CATG 4 cut(s) 352, 455, 484, 613
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 613
OliI CACNNNNGTG 2 cut(s) 529, 612
PaqCI CACCTGC 1 cut(s) 86
PciI ACATGT 1 cut(s) 609
PctI GAATGC 2 cut(s) 92, 560
PfeI GAWTC 3 cut(s) 422, 443, 501
PkrI GCNGC 2 cut(s) 128, 571
PmaCI CACGTG 1 cut(s) 83
PmeI GTTTAAAC 1 cut(s) 655
PmlI CACGTG 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 83
PscI ACATGT 1 cut(s) 609
PspCI CACGTG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 141
PstI CTGCAG 1 cut(s) 97
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 4 cut(s) 85, 529, 612, 636
SaqAI TTAA 2 cut(s) 12, 654
SatI GCNGC 2 cut(s) 127, 570
Sau3AI GATC 5 cut(s) 107, 190, 250, 541, 586
SbfI CCTGCAGG 1 cut(s) 97
SdaI CCTGCAGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 609
SetI ASST 7 cut(s) 41, 85, 100, 131, 145, 372, 408
SfaNI GCATC 3 cut(s) 91, 364, 499
SfcI CTRYAG 1 cut(s) 93
SmiMI CAYNNNNRTG 4 cut(s) 85, 529, 612, 636
Sse8387I CCTGCAGG 1 cut(s) 97
Sse9I AATT 5 cut(s) 169, 208, 393, 476, 576
SsiI CCGC 3 cut(s) 281, 558, 569
SspI AATATT 1 cut(s) 204
SspMI CTAG 4 cut(s) 123, 236, 440, 665
TaaI ACNGT 2 cut(s) 32, 271
TaiI ACGT 1 cut(s) 85
TaqII GACCGA 1 cut(s) 334
TasI AATT 5 cut(s) 169, 208, 393, 476, 576
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 3 cut(s) 422, 443, 501
Tru1I TTAA 2 cut(s) 12, 654
Tru9I TTAA 2 cut(s) 12, 654
TscAI CASTG 2 cut(s) 35, 265
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 6 cut(s) 121, 469, 486, 493, 567, 611
TspRI CASTG 2 cut(s) 35, 265
VneI GTGCAC 1 cut(s) 605
XapI RAATTY 1 cut(s) 476
XbaI TCTAGA 2 cut(s) 235, 439
XceI RCATGY 1 cut(s) 613
XspI CTAG 4 cut(s) 123, 236, 440, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.