Rroxscaffold_4G00330070

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001545
Physical Location & Seq
Forward (+)
63438569 .. 63449018
10450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330070.1

Sequence Viewer

Length: 630 bp
ATGACAGCTATGATTACGAATTTGCTCGAGGTAGCCAAATCCGGTGAGGGCAGGTCATTACGCCAAGTTCGCCTTCCGTGGCTTTGGGGCTGTAGATTCGGTGAGACTACTCGACTTTTAGAGCCACCGGAGTCTTCAATTGGAAGTGACCGTGGAAGCTTGTGTGTGCATAGGTGTGGTCTCCGTCTTTTATATCTGCAAGATGAGGAAGGGTTTAAGCAGACCATAATGCACTACATGACCTCCTTGTCTGATATTGATCAAGGGAAAAATAAGCAATTCCGGGACTGCAAGGTGGGATCATCTCCTAGAACCGGCAGCTACATTCGTGATGAGGAAGAGTTTAAACAGACCCTAGTGCACTACATGGCGTTGTCGTCGGATAATAAAGCGAAAAATAAGCAATACCATCACGGTGAGACGGAATCATCGAGCAAAATAGACAACAGCATTGAGGAACTCCCTCACATTGAAAGAGTGCTCAATGATAAACGATGGGATTATGAAGAAAAAGGGGCAGCTTCTGGGTTATGGAGATTTTGGGTCTCGGCAGAGCAGGTATGGGATTTGCTACACCGTGAAGAAGAGGACACATGCATGCCAACCACAAATGCTAGACTTGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

209

Amino Acids

24.19

Weight (kDa)

5.7

Isoelectric Point (pI)

68.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
Acc36I ACCTGC 2 cut(s) 42, 547
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 3 cut(s) 138, 473, 623
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 4 cut(s) 8, 159, 321, 521
AluI AGCT 4 cut(s) 8, 159, 321, 521
Alw21I GWGCWC 2 cut(s) 363, 483
Alw26I GTCTC 4 cut(s) 98, 185, 413, 550
Alw44I GTGCAC 1 cut(s) 359
AlwI GGATC 1 cut(s) 307
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 26
ApaLI GTGCAC 1 cut(s) 359
ApeKI GCWGC 2 cut(s) 318, 518
ApoI RAATTY 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 3 cut(s) 56, 113, 428
AvaI CYCGRG 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 363, 483
BbvI GCAGC 2 cut(s) 330, 530
BccI CCATC 2 cut(s) 417, 489
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 4 cut(s) 98, 185, 413, 550
BfaI CTAG 3 cut(s) 309, 356, 615
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 2 cut(s) 42, 547
BisI GCNGC 2 cut(s) 319, 519
BlsI GCNGC 2 cut(s) 320, 520
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 258
BsaI GGTCTC 2 cut(s) 185, 550
BsaJI CCNNGG 2 cut(s) 77, 151
BsaWI WCCGGW 2 cut(s) 41, 127
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 77, 151
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 2 cut(s) 330, 530
BsiHKAI GWGCWC 2 cut(s) 363, 483
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 4 cut(s) 42, 128, 283, 315
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 4 cut(s) 98, 185, 413, 550
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 299
Bso31I GGTCTC 2 cut(s) 185, 550
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 363, 483
Bsp143I GATC 2 cut(s) 259, 299
BspMI ACCTGC 2 cut(s) 42, 547
BspPI GGATC 1 cut(s) 307
BspTNI GGTCTC 2 cut(s) 185, 550
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 77, 151
BssMI GATC 2 cut(s) 259, 299
Bst4CI ACNGT 3 cut(s) 152, 416, 578
Bst6I CTCTTC 2 cut(s) 333, 579
BstC8I GCNNGC 1 cut(s) 599
BstDSI CCRYGG 2 cut(s) 77, 151
BstKTI GATC 2 cut(s) 262, 302
BstMAI GTCTC 4 cut(s) 98, 185, 413, 550
BstMBI GATC 2 cut(s) 259, 299
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNSI RCATGY 2 cut(s) 597, 601
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 330, 530
BstV2I GAAGAC 1 cut(s) 126
BtgI CCRYGG 2 cut(s) 77, 151
BveI ACCTGC 2 cut(s) 42, 547
Cac8I GCNNGC 1 cut(s) 599
CaiI CAGNNNCTG 1 cut(s) 524
Cfr10I RCCGGY 1 cut(s) 314
CviAII CATG 4 cut(s) 238, 367, 594, 598
CviJI RGCY 8 cut(s) 8, 35, 82, 90, 124, 159, 321, 521
CviKI_1 RGCY 8 cut(s) 8, 35, 82, 90, 124, 159, 321, 521
DpnI GATC 2 cut(s) 261, 301
DpnII GATC 2 cut(s) 259, 299
DraI TTTAAA 1 cut(s) 346
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 333, 579
EarI CTCTTC 2 cut(s) 333, 579
Eco31I GGTCTC 2 cut(s) 185, 550
Eco88I CYCGRG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 599
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 4 cut(s) 241, 370, 597, 601
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 237, 366, 593, 597
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 319, 519
Fsp4HI GCNGC 2 cut(s) 319, 519
FspBI CTAG 3 cut(s) 309, 356, 615
GluI GCNGC 2 cut(s) 319, 519
HapII CCGG 4 cut(s) 42, 128, 283, 315
Hin1II CATG 4 cut(s) 241, 370, 597, 601
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 3 cut(s) 96, 131, 425
HpaII CCGG 4 cut(s) 42, 128, 283, 315
HphI GGTGA 3 cut(s) 56, 113, 428
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 253, 382
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 2 cut(s) 83, 203
HpyCH4III ACNGT 3 cut(s) 152, 416, 578
HpyCH4V TGCA 6 cut(s) 169, 199, 232, 291, 361, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
Hsp92II CATG 4 cut(s) 241, 370, 597, 601
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 299
LpnPI CCDG 7 cut(s) 37, 55, 141, 296, 328, 510, 542
Lsp1109I GCAGC 2 cut(s) 330, 530
MaeI CTAG 3 cut(s) 309, 356, 615
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 261, 301
MboI GATC 2 cut(s) 259, 299
MboII GAAGA 5 cut(s) 126, 350, 518, 593, 596
MfeI CAATTG 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 363, 483
MluCI AATT 3 cut(s) 19, 138, 278
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 8 cut(s) 22, 40, 199, 253, 328, 448, 474, 580
Mph1103I ATGCAT 1 cut(s) 599
MseI TTAA 2 cut(s) 216, 345
MslI CAYNNNNRTG 3 cut(s) 174, 414, 596
MspI CCGG 4 cut(s) 42, 128, 283, 315
MspR9I CCNGG 1 cut(s) 284
MssI GTTTAAAC 1 cut(s) 346
MunI CAATTG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 69
NciI CCSGG 1 cut(s) 284
NdeII GATC 2 cut(s) 259, 299
NlaIII CATG 4 cut(s) 241, 370, 597, 601
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 599
NspI RCATGY 2 cut(s) 597, 601
PaeI GCATGC 1 cut(s) 601
PaeR7I CTCGAG 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 2 cut(s) 96, 425
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 2 cut(s) 320, 520
PleI GAGTC 1 cut(s) 139
PmeI GTTTAAAC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 139
PspXI VCTCGAGB 1 cut(s) 26
PstNI CAGNNNCTG 1 cut(s) 524
RseI CAYNNNNRTG 3 cut(s) 174, 414, 596
SaqAI TTAA 2 cut(s) 216, 345
SatI GCNGC 2 cut(s) 319, 519
Sau3AI GATC 2 cut(s) 259, 299
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 2 cut(s) 363, 483
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 26
SmiMI CAYNNNNRTG 3 cut(s) 174, 414, 596
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SphI GCATGC 1 cut(s) 601
Sse9I AATT 3 cut(s) 19, 138, 278
SspMI CTAG 3 cut(s) 309, 356, 615
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 152, 416, 578
TaqI TCGA 3 cut(s) 27, 112, 431
TasI AATT 3 cut(s) 19, 138, 278
TfiI GAWTC 2 cut(s) 96, 425
Tru1I TTAA 2 cut(s) 216, 345
Tru9I TTAA 2 cut(s) 216, 345
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 318, 518
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 3 cut(s) 66, 173, 437
VneI GTGCAC 1 cut(s) 359
XapI RAATTY 1 cut(s) 19
XceI RCATGY 2 cut(s) 597, 601
XhoI CTCGAG 1 cut(s) 26
XspI CTAG 3 cut(s) 309, 356, 615
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.