MD12G1068700.v1.1

resistance protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
8172424 .. 8183696
11273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1068700.v1.1.491

Sequence Viewer

Length: 4698 bp
ATGGGCAGAGAAATTGTTCGTGGAGAAAATGAAGAGAAGGGAAAACGCAGCAGATTGTGGCTTTGCACAGATGCCCTTCATGTAATAAAGAAATATAAGGGGACAGATGCTGTTAAAGGCATTTTCTTAAGCTCGCCTAAGGAAGAGAAAGTACACTTGAAGAAAGACACATTCTTAAATATGGACGATCTAAAATTGTTGAAAATTCACAATGTGATATTTTCTGGATGCGTGGAGTCTCTTTCAGATGAGTTAAGGTTCTTGGAATGGCACGAATATCCTTTAAAATTGCTGCCTTCAAGTTTTGAACCCGAAAACCTTGTTGAACTGCACTTGCCTGGAAGCAAAATAGAGAAATTATGGGAGGAATTTGAGAAGCCTTTGGAAACGTTGGTAATACTCAACCTTACTGATTGTGAAAAGTTGATCGAGACCCCCGACTTCGGCAAAGTCCCAAACCTTGAGCAGCTAATCCTTAAAGGTTGCACATGCTTGTCTGAGGTTCCCGATATAATCAACTTGAGATCTCTTATGACTTTCATTCTTTCGGGATGTTCCAGACTTGAAAAGCTTCCAGAGATTGGAGAAGACATGAAACAATTAAGGGAACTGTATTTAGATGGGACAGCTATAGAAGTGCTACCGACATCAATCAAGCATCTGACCGGACTTACTGTGCTCAATCTCAAAGACTGCAAGAACCTTTTGAGTCTGCCTGACATCATTTGTACTAGTTTGACATCCCTTCAAACTTTGACCATCTCAGGGTGTGCGAATCTTAAAGAGTTGCCAGAAAACCTTGGTTGTTTAAACTGTTTACTGGAGCTTGATGCAAGCGGGACAGCTATAAAACAGCTACCAGCATCAATCAAGGATCTGACCAGGCTTAGCAAGCTTTATCTCAGATATTGCAAAAACCTTTGCAGTTTGCCAGCAACCATTTGTACTAGTTTGACGTTACTTCAAATTCTCAACCTCTCAGGGTGTTCGAATCTTGACGAGTTGCCAGAGAACTTGGGGAGTTTAGAATGTTTACAGGAGCTTTATGCTGGCGGGACTGCTATAAGTGAAGTACCTGAAAGCATCTCTCAACTTTCTCAACTTGGAGAACTTGTATTGGATGATTGTAGCAAGCTTCGGTCCTGGCCAAGACTTCCATTTAGTATAAGATGGGTAAGGGCACATAATTGTCCCTTGTTGGAGGGAGCACATTCAGATAAAATAATGGTATGGAATTCAACTGCTGCTGGATTTAGTTTTATAGATCGCCGAAGTGATAAAACCAAAGGTCAGGCATATTGGCTACCGCCTAAATATCTTTTGAGGGAGTCCTATCAAACATACTTTGAGGATTCAATTCATCGCAGTACTATGTTAGAATATTCTTATCGATCAAATAAAATTCCAGCATGGTTGAGCCGTCAGAGTACTGAATCCAGTGTAGCAATCCCACTGCCTCGTGATGTTGATGGTATAAGTAAATGGATGGGACTTGCTCTATGTTTTGTCTGTGTAGCTGCACAGAAGCATGATAATTTGGAAGATGAGCCAGAATTTGATGAGAAATCGCAATCAAACCTCACTCGCAATTTCCGCATTGATCTCTATACAACTGAAGATCCTCATGAACGTCCCCAAGTGCTTAATTACGGTGATCTTGATTTCACTGGACCATTTATACATTGGTTGTATATACCACGAACTGGCCTTGAAGAATGTTCAAATAAACGCTTCATCCGAGCTTTGATTACACCTGATAGCCCAGAAGTAAAAGTGAAAGAGTGTGGGGCGAGTCAAATAAACTCGGAACACGTGACCACATTTGTCAGTAAAATGATTAAGCACAATAAAAATTTCTGTAACGGCCATCAGCCTGAAGAAGAAGACGAAAACGAAGATGGTATGAGAAGTGTTCCGTCGACAAGTGGGGTTCAAATTCAACAAGAATTACAAAAAGAAGAAACTACTAGTTCAACTCCCATTGTAGGTCAATTGAGAAGAAACGTAGTGTCATTGCTTGAAAAACTATTTGAGGGATTGCGGAGGGGCCTGCCAAATATCCACGATTATGGTTTTATTTTTTCTCGACGAGAAAAATTACAATGGTTCAGTGAACAGAGCACTACGTCTGCATGCACGGTCAACTTAACTCTACCTCCGTATCTGCATAATGATGAGAAATGGGCGGGACTTTCTCTATATGTTGTTTGCAGTCTGCCTCAAGGTGTTCAATTTGGCCGCATTTACTATGAGTGTCATTTGTATACACCTATTGAAGCTGTGGGTGTGGAAGCACTGATGCATCGACTAATGTTATGGTCCCCGTTGGATAACAATGTGGGGTCACATCGACTCCTTATTGTTCATATACCACGAGTACGTTTTCCGGAACGCTTGAATCGGTGTCGCTTCATTCAAGCTTTATTTGGATGTAGAACTCCAGGTGTGAAGGTTGAAATGTGCGGGATGCGTCTAGTATACGACCAAGACTTGAAAGGGTTAATCCAAACAATAACCCATTGCACCACCACAACGGGTCGCCCTGTTTACTACGGAACTGGTGATTTTACAGATACCAAGAAATATAATGGAATTAGTTTGGGATGTACAAGTTTGTTAATGAATTTTCTTGAAGCAGCCAAATCCACGGAGCACAGCTCAGTGAGCGAAGTTTGTCCTCGTTTCATGCCACTTGATTTTCGCCCAAAAACTGACTCTGCTGAGGAATCTCAACAAGAAAGAAAAAGAACATCAGCTTGTCAGGATGAAGCAACAGGAAGTAATTGGGACTTTCTACGACGGGAGATTGCTCTTTCTTTAGGAATTAATTACGAATTTCTACAGCAGGAGATTGTTTGTTCTTATGGTCATGCCAACAATATAAGCTTGGATCAGAGTCGGCTCCTGGACTTCGACCGTGACTTGATATATAATTCTTGTTTCCCTCCCAATGAGATTATAGACTGGTTCGAGGGTAAAAGCAGAGATCACTCTGTAAAAGTCTCTCTACCACCAAATCTATGTGAAGACACCAATTGGAGGGGACTAGCTTTATGTGCATACTTTTCAGTCCTCGACCATTCAACTACCGACCATGAAAATTTGGATCTCGATATTTCTCACAATCTTACATGTCTTTTAGAAACTGATAAAGGTTCTCTGGATTCTCCCCATAGCTATTGCACCCCCAAGCAAGAATTCAAGTGGTTGAATCGTATGGGAGGATTCATTTGGTTGTCCTATATACCACGATGTTGGTTTTCGAATCAGTTGAATGAAGGAGGGCACCTGGAGGCTTCAATTGTAAGCGATTGTGGAAGCTTGGGTGTGCATAGGTGTGGGCTCCGTCTTATATATCTGAAAGATGAAGAAGGGCTCAAGGAGACCATAATGCACTGCATGACTTCCTTGTCTGATATTAATGAAGGGGAAGAAAAACAAAACCAGGACTGTGAGGTAGGATCATCTAGTATTACAGGCGTCGACATTGTAAATCCTCATCTTGAGAAATCAGAGCAGCCCAGTGATAAGAAATGGATTTTTGACTGTTATTCGATCTATAATGCTTGTTTCCCTTCAAGCATCAGTCTAGAGTGGTTTGGGGATCAGAGCAATGGTTCCTCGGTAATAATTCCACTACCACCAAATTTGTATAGTGACACTAATTGGAAAGGATTGGCTCTACGTGCTTACTTCTCCGTTGGGGAAAATCCAACTGCTGAGCTAGACAATTTGAATCGAGATATTCCCCACCATCTGATATGTCATTTGGAATCAGAAAGAGGTACAATAGAACCTCTCCATGACTACTGCACCACCAATGAAGAATTCCAGTGGTTATATTTCGGGGGATTCATTTGGGTAGCTTATATACCACGAGCATCATTTTTGGATCAGTTGAATGGATGCAGTATCCTGAAGGCTTCAATTGCAAGCGATCATGAAGCATGTAATGTGCATAGTTGTGGGCTAGGCCTTGTAAATCAGCATGATCAGGAAGAGTTTGAGGAGGCCTTATTTCACAATATGATGTTGTTGTCAGATAAGAAGGGCAAAAATAAGCAATGCGCTGAGGGTAACTCGGAATCATCTAGTAGATGTAGCAGCTACATTACGAAACCTCATCTTGAAAGATTAGTAAAGCCGAGTCACAGAAAATGGGACTTCGATCGTTTCTCTGTATACAATTCATGTTTCCCTTCAAACATAGATCTAGAGTGGTTTGGCCATCAAAGCAATGACTACTCGCTAACAATCAGTTTGCCACAAAATCTAAACATGGACAGTAATTGGCTAGGATTGGCTGTATGTGCAAACTTTGCAATCCTGGAGCATCTGACTTCTGAGATTGACAATTTGGATATCCCAGCAATTTCTCACAACCTTAGTTGTCATTTTGAATCGGACAAAGGGAATTCTCTGCATCACTACTGCACAAGCAAAGAAGAATTCATGTGGTTGCATCTAGGAGGATTCGTTTGGGTATCCTACATACCACGAGCGTGGTTTTCAGATCAGTTGAATGAATGCAGTTCCCTAGAAGCTTCAGTCGTAAGCGATCACGAGGCCTTCAGTGTCCATAAGTGTGGTCTCCGCCTACTATACCAGTATGATGAAGAAGAGTTTACTCAGGCCATATTGCAGTATATGACGTCATTGTGCGATAAGAAAGGGAAAAATAAGCAAACACCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1566

Amino Acids

177.87

Weight (kDa)

5.34

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_3 PF07725 106 - 123 9.8e-07 Leucine Rich Repeat
LRR_14 PF23598 133 - 252 7.8e-06 Leucine-rich repeat region
LRR_13 PF23286 175 - 262 9.9e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 224 - 326 9e-10 Leucine-rich repeat region
LRR_14 PF23598 299 - 379 7.4e-10 Leucine-rich repeat region
C-JID PF20160 982 - 1123 1.6e-07 C-JID domain
C-JID PF20160 1406 - 1539 3.4e-09 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3409
AatII GACGTC 1 cut(s) 4655
AccB1I GGYRCC 1 cut(s) 3285
AccB7I CCANNNNNTGG 2 cut(s) 581, 1703
AccI GTMKAC 5 cut(s) 1919, 2264, 2478, 3483, 4182
AccIII TCCGGA 1 cut(s) 2386
AciI CCGC 9 cut(s) 837, 1053, 1307, 1594, 2041, 2186, 2239, 2463, 4594
AclI AACGTT 1 cut(s) 389
AclWI GGATC 7 cut(s) 882, 1613, 2898, 3114, 3469, 3612, 3900
AcoI YGGCCR 4 cut(s) 1145, 1864, 2236, 4225
AcuI CTGAAG 5 cut(s) 1635, 1896, 3938, 4530, 4555
AcvI CACGTG 1 cut(s) 1813
AcyI GRCGYC 2 cut(s) 3480, 4652
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 9 cut(s) 153, 730, 946, 1074, 1369, 1429, 2379, 2608, 3787
AfiI CCNNNNNNNGG 6 cut(s) 443, 581, 765, 1703, 1985, 3039
AflII CTTAAG 1 cut(s) 127
AflIII ACRYGT 2 cut(s) 1810, 3131
AhlI ACTAGT 3 cut(s) 731, 947, 1967
AjnI CCWGG 8 cut(s) 337, 881, 1142, 2440, 2904, 3288, 3444, 4326
AjuI GAANNNNNNNTTGG 4 cut(s) 3182, 3214, 3812, 3844
AleI CACNNNNGTG 1 cut(s) 4501
Alw21I GWGCWC 4 cut(s) 681, 1210, 2123, 2655
Alw26I GTCTC 5 cut(s) 243, 425, 3007, 3377, 4595
AlwI GGATC 7 cut(s) 882, 1613, 2898, 3114, 3469, 3612, 3900
AlwNI CAGNNNCTG 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 2386
ApeKI GCWGC 8 cut(s) 48, 292, 466, 1244, 1517, 2636, 3517, 4104
AseI ATTAAT 2 cut(s) 2826, 3420
Asp700I GAANNNNTTC 2 cut(s) 15, 570
AspLEI GCGC 1 cut(s) 4070
AspS9I GGNCC 4 cut(s) 1140, 1670, 2047, 2319
AsuHPI GGTGA 2 cut(s) 1664, 2573
AsuII TTCGAA 2 cut(s) 989, 3263
AvaII GGWCC 3 cut(s) 1140, 1670, 2319
AxyI CCTNAGG 1 cut(s) 138
BaeGI GKGCMC 2 cut(s) 1183, 3288
BaeI ACNNNNGTAYC 2 cut(s) 2144, 2177
BalI TGGCCA 2 cut(s) 1147, 4227
BanI GGYRCC 1 cut(s) 3285
BanII GRGCYC 2 cut(s) 3345, 3378
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BauI CACGAG 5 cut(s) 1458, 2373, 3876, 4497, 4562
BbrPI CACGTG 1 cut(s) 1813
BbsI GAAGAC 3 cut(s) 594, 1890, 3033
Bbv12I GWGCWC 4 cut(s) 681, 1210, 2123, 2655
BbvCI CCTCAGC 2 cut(s) 2721, 4071
BbvI GCAGC 8 cut(s) 60, 279, 478, 1231, 1504, 2648, 3529, 4116
BccI CCATC 9 cut(s) 614, 767, 1164, 1463, 1480, 1875, 1892, 3762, 4236
BceAI ACGGC 2 cut(s) 1404, 1879
BciT130I CCWGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
BciVI GTATCC 2 cut(s) 3923, 4495
BclI TGATCA 1 cut(s) 3991
BcoDI GTCTC 5 cut(s) 243, 425, 3007, 3377, 4595
BcuI ACTAGT 3 cut(s) 731, 947, 1967
BfmI CTRYAG 2 cut(s) 630, 2840
BfrI CTTAAG 1 cut(s) 127
BfuI GTATCC 2 cut(s) 3923, 4495
BglII AGATCT 2 cut(s) 524, 4210
BisI GCNGC 9 cut(s) 49, 293, 467, 1245, 1518, 2239, 2637, 3518, 4105
BlpI GCTNAGC 2 cut(s) 887, 3720
BlsI GCNGC 9 cut(s) 50, 294, 468, 1246, 1519, 2240, 2638, 3519, 4106
BmcAI AGTACT 2 cut(s) 1369, 1429
Bme1390I CCNGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
Bme18I GGWCC 3 cut(s) 1140, 1670, 2319
BmgT120I GGNCC 4 cut(s) 1140, 1670, 2047, 2319
BmiI GGNNCC 7 cut(s) 504, 2048, 2321, 2903, 3287, 3344, 3619
BmrFI CCNGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
BmrI ACTGGG 1 cut(s) 3516
BmuI ACTGGG 1 cut(s) 3516
BpiI GAAGAC 3 cut(s) 594, 1890, 3033
BplI GAGNNNNNCTC 4 cut(s) 2642, 2674, 4064, 4096
BpmI CTGGAG 4 cut(s) 842, 2424, 3311, 4349
Bpu10I CCTNAGC 2 cut(s) 2721, 4071
Bpu1102I GCTNAGC 2 cut(s) 887, 3720
Bpu14I TTCGAA 2 cut(s) 989, 3263
BpuEI CTTGAG 5 cut(s) 482, 541, 2205, 3362, 3524
Bsa29I ATCGAT 1 cut(s) 1390
BsaAI YACGTR 2 cut(s) 1813, 3686
BsaHI GRCGYC 2 cut(s) 3480, 4652
BsaI GGTCTC 3 cut(s) 425, 3377, 4595
BsaJI CCNNGG 3 cut(s) 799, 2646, 3621
BsaWI WCCGGW 2 cut(s) 665, 2386
BsaXI ACNNNNNCTCC 8 cut(s) 1098, 1128, 2140, 2170, 2337, 2367, 4461, 4491
Bsc4I CCNNNNNNNGG 6 cut(s) 443, 581, 765, 1703, 1985, 3039
Bse1I ACTGG 9 cut(s) 825, 1437, 1672, 1708, 2563, 2969, 3522, 3832, 4606
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 5 cut(s) 2012, 2518, 3619, 4070, 4243
BseAI TCCGGA 1 cut(s) 2386
BseBI CCWGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
BseCI ATCGAT 1 cut(s) 1390
BseDI CCNNGG 3 cut(s) 799, 2646, 3621
BseLI CCNNNNNNNGG 6 cut(s) 443, 581, 765, 1703, 1985, 3039
BseMI GCAATG 5 cut(s) 2012, 2518, 3619, 4070, 4243
BseNI ACTGG 9 cut(s) 825, 1437, 1672, 1708, 2563, 2969, 3522, 3832, 4606
BseRI GAGGAG 1 cut(s) 4022
BseSI GKGCMC 2 cut(s) 1183, 3288
BseXI GCAGC 8 cut(s) 60, 279, 478, 1231, 1504, 2648, 3529, 4116
BseYI CCCAGC 1 cut(s) 4366
BsgI GTGCAG 4 cut(s) 314, 1503, 3796, 4417
Bsh1285I CGRYCG 2 cut(s) 2917, 4171
BshNI GGYRCC 1 cut(s) 3285
BshVI ATCGAT 1 cut(s) 1390
BsiEI CGRYCG 2 cut(s) 2917, 4171
BsiHKAI GWGCWC 4 cut(s) 681, 1210, 2123, 2655
BsiSI CCGG 2 cut(s) 666, 2387
BslI CCNNNNNNNGG 6 cut(s) 443, 581, 765, 1703, 1985, 3039
BsmAI GTCTC 5 cut(s) 243, 425, 3007, 3377, 4595
BsmI GAATGC 1 cut(s) 4532
Bso31I GGTCTC 3 cut(s) 425, 3377, 4595
Bsp119I TTCGAA 2 cut(s) 989, 3263
Bsp1286I GDGCHC 8 cut(s) 681, 1183, 1210, 2123, 2655, 3288, 3345, 3378
Bsp13I TCCGGA 1 cut(s) 2386
Bsp1407I TGTACA 1 cut(s) 2606
Bsp1720I GCTNAGC 2 cut(s) 887, 3720
BspACI CCGC 9 cut(s) 837, 1053, 1307, 1594, 2041, 2186, 2239, 2463, 4594
BspDI ATCGAT 1 cut(s) 1390
BspEI TCCGGA 1 cut(s) 2386
BspHI TCATGA 2 cut(s) 1624, 3940
BspLI GGNNCC 7 cut(s) 504, 2048, 2321, 2903, 3287, 3344, 3619
BspPI GGATC 7 cut(s) 882, 1613, 2898, 3114, 3469, 3612, 3900
BspT104I TTCGAA 2 cut(s) 989, 3263
BspT107I GGYRCC 1 cut(s) 3285
BspTI CTTAAG 1 cut(s) 127
BspTNI GGTCTC 3 cut(s) 425, 3377, 4595
BsrDI GCAATG 5 cut(s) 2012, 2518, 3619, 4070, 4243
BsrGI TGTACA 1 cut(s) 2606
BsrI ACTGG 9 cut(s) 825, 1437, 1672, 1708, 2563, 2969, 3522, 3832, 4606
BssECI CCNNGG 3 cut(s) 799, 2646, 3621
BssNAI GTATAC 3 cut(s) 2265, 2479, 4183
BssNI GRCGYC 2 cut(s) 3480, 4652
BssSI CACGAG 5 cut(s) 1458, 2373, 3876, 4497, 4562
BssT1I CCWWGG 1 cut(s) 799
Bst1107I GTATAC 3 cut(s) 2265, 2479, 4183
Bst2BI CACGAG 5 cut(s) 1458, 2373, 3876, 4497, 4562
Bst2UI CCWGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
Bst4CI ACNGT 9 cut(s) 612, 676, 815, 1652, 2140, 2918, 3452, 3548, 4286
Bst6I CTCTTC 4 cut(s) 27, 138, 3993, 4614
BstACI GRCGYC 2 cut(s) 3480, 4652
BstAFI CTTAAG 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 4319
BstAUI TGTACA 1 cut(s) 2606
BstBAI YACGTR 2 cut(s) 1813, 3686
BstBI TTCGAA 2 cut(s) 989, 3263
BstC8I GCNNGC 9 cut(s) 134, 835, 893, 933, 1051, 1133, 2051, 2134, 3934
BstDSI CCRYGG 1 cut(s) 2646
BstHHI GCGC 1 cut(s) 4070
BstMAI GTCTC 5 cut(s) 243, 425, 3007, 3377, 4595
BstMCI CGRYCG 2 cut(s) 2917, 4171
BstMWI GCNNNNNNNGC 9 cut(s) 892, 1593, 2664, 3056, 3686, 3929, 4233, 4310, 4319
BstNI CCWGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
BstNSI RCATGY 4 cut(s) 492, 2136, 3135, 3951
BstSCI CCNGG 8 cut(s) 337, 881, 1142, 2440, 2904, 3288, 3444, 4326
BstSFI CTRYAG 2 cut(s) 630, 2840
BstSLI GKGCMC 2 cut(s) 1183, 3288
BstV1I GCAGC 8 cut(s) 60, 279, 478, 1231, 1504, 2648, 3529, 4116
BstV2I GAAGAC 3 cut(s) 594, 1890, 3033
BstX2I RGATCY 5 cut(s) 524, 874, 1618, 3106, 4210
BstXI CCANNNNNNTGG 4 cut(s) 2069, 3255, 4503, 4586
BstYI RGATCY 5 cut(s) 524, 874, 1618, 3106, 4210
BstZ17I GTATAC 3 cut(s) 2265, 2479, 4183
Bsu15I ATCGAT 1 cut(s) 1390
Bsu36I CCTNAGG 1 cut(s) 138
BsuI GTATCC 2 cut(s) 3923, 4495
BsuTUI ATCGAT 1 cut(s) 1390
BtgI CCRYGG 1 cut(s) 2646
BtgZI GCGATG 1 cut(s) 1346
BtsI GCAGTG 2 cut(s) 1451, 3394
Cac8I GCNNGC 9 cut(s) 134, 835, 893, 933, 1051, 1133, 2051, 2134, 3934
CaiI CAGNNNCTG 1 cut(s) 110
CciI TCATGA 2 cut(s) 1624, 3940
CfoI GCGC 1 cut(s) 4070
Cfr13I GGNCC 4 cut(s) 1140, 1670, 2047, 2319
ClaI ATCGAT 1 cut(s) 1390
CseI GACGC 2 cut(s) 2459, 3469
Csp6I GTAC 9 cut(s) 152, 729, 945, 1073, 1368, 1428, 2378, 2607, 3786
CspCI CAANNNNNGTGG 2 cut(s) 3630, 3665
CviQI GTAC 9 cut(s) 152, 729, 945, 1073, 1368, 1428, 2378, 2607, 3786
DraI TTTAAA 2 cut(s) 285, 810
DraIII CACNNNGTG 1 cut(s) 214
DrdI GACNNNNNNGTC 1 cut(s) 3409
DseDI GACNNNNNNGTC 1 cut(s) 3409
EaeI YGGCCR 4 cut(s) 1145, 1864, 2236, 4225
Eam1104I CTCTTC 4 cut(s) 27, 138, 3993, 4614
EarI CTCTTC 4 cut(s) 27, 138, 3993, 4614
EciI GGCGGA 1 cut(s) 4583
Eco130I CCWWGG 1 cut(s) 799
Eco147I AGGCCT 3 cut(s) 3975, 4013, 4568
Eco24I GRGCYC 2 cut(s) 3345, 3378
Eco31I GGTCTC 3 cut(s) 425, 3377, 4595
Eco32I GATATC 1 cut(s) 4363
Eco47I GGWCC 3 cut(s) 1140, 1670, 2319
Eco57I CTGAAG 5 cut(s) 1635, 1896, 3938, 4530, 4555
Eco72I CACGTG 1 cut(s) 1813
Eco81I CCTNAGG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 2047
EcoRI GAATTC 5 cut(s) 1234, 3197, 3827, 4414, 4448
EcoRII CCWGG 8 cut(s) 337, 881, 1142, 2440, 2904, 3288, 3444, 4326
EcoRV GATATC 1 cut(s) 4363
EcoT14I CCWWGG 1 cut(s) 799
EcoT22I ATGCAT 1 cut(s) 2304
EcoT38I GRGCYC 2 cut(s) 3345, 3378
ErhI CCWWGG 1 cut(s) 799
FauI CCCGC 4 cut(s) 830, 1046, 2179, 2456
FbaI TGATCA 1 cut(s) 3991
FblI GTMKAC 5 cut(s) 1919, 2264, 2478, 3483, 4182
Fnu4HI GCNGC 9 cut(s) 49, 293, 467, 1245, 1518, 2239, 2637, 3518, 4105
FriOI GRGCYC 2 cut(s) 3345, 3378
Fsp4HI GCNGC 9 cut(s) 49, 293, 467, 1245, 1518, 2239, 2637, 3518, 4105
GlaI GCGC 1 cut(s) 4069
GluI GCNGC 9 cut(s) 49, 293, 467, 1245, 1518, 2239, 2637, 3518, 4105
GsaI CCCAGC 1 cut(s) 4370
GsuI CTGGAG 4 cut(s) 842, 2424, 3311, 4349
HapII CCGG 2 cut(s) 666, 2387
HgaI GACGC 2 cut(s) 2459, 3469
HhaI GCGC 1 cut(s) 4070
Hin1I GRCGYC 2 cut(s) 3480, 4652
Hin6I GCGC 1 cut(s) 4068
HinP1I GCGC 1 cut(s) 4068
HincII GTYRAC 3 cut(s) 1920, 2143, 3484
HindII GTYRAC 3 cut(s) 1920, 2143, 3484
HindIII AAGCTT 7 cut(s) 569, 893, 1133, 2418, 2884, 3319, 4542
HpaII CCGG 2 cut(s) 666, 2387
HphI GGTGA 2 cut(s) 1664, 2573
Hpy99I CGWCG 4 cut(s) 1921, 2091, 2802, 3485
HpyCH4III ACNGT 9 cut(s) 612, 676, 815, 1652, 2140, 2918, 3452, 3548, 4286
HpyCH4IV ACGT 9 cut(s) 389, 956, 1630, 1812, 2004, 2126, 2380, 3685, 4652
HpyF10VI GCNNNNNNNGC 9 cut(s) 892, 1593, 2664, 3056, 3686, 3929, 4233, 4310, 4319
HpySE526I ACGT 9 cut(s) 389, 956, 1630, 1812, 2004, 2126, 2380, 3685, 4652
Hsp92I GRCGYC 2 cut(s) 3480, 4652
HspAI GCGC 1 cut(s) 4068
Kpn2I TCCGGA 1 cut(s) 2386
Ksp22I TGATCA 1 cut(s) 3991
LmnI GCTCC 7 cut(s) 823, 1039, 1205, 2650, 2907, 3348, 4330
Lsp1109I GCAGC 8 cut(s) 60, 279, 478, 1231, 1504, 2648, 3529, 4116
MaeII ACGT 9 cut(s) 389, 956, 1630, 1812, 2004, 2126, 2380, 3685, 4652
MaeIII GTNAC 8 cut(s) 957, 1813, 1859, 2343, 2918, 3656, 4076, 4148
MfeI CAATTG 4 cut(s) 1991, 3034, 3300, 3927
MflI RGATCY 5 cut(s) 524, 874, 1618, 3106, 4210
MhlI GDGCHC 8 cut(s) 681, 1183, 1210, 2123, 2655, 3288, 3345, 3378
MlsI TGGCCA 2 cut(s) 1147, 4227
MluNI TGGCCA 2 cut(s) 1147, 4227
MlyI GAGTC 8 cut(s) 245, 718, 1337, 1801, 2346, 2708, 2905, 4156
MmeI TCCRAC 3 cut(s) 1179, 2307, 3737
Mox20I TGGCCA 2 cut(s) 1147, 4227
Mph1103I ATGCAT 1 cut(s) 2304
MroI TCCGGA 1 cut(s) 2386
MroXI GAANNNNTTC 2 cut(s) 15, 570
MscI TGGCCA 2 cut(s) 1147, 4227
MslI CAYNNNNRTG 6 cut(s) 2067, 2172, 3336, 3963, 4501, 4584
Msp20I TGGCCA 2 cut(s) 1147, 4227
MspCI CTTAAG 1 cut(s) 127
MspI CCGG 2 cut(s) 666, 2387
MspR9I CCNGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
MssI GTTTAAAC 1 cut(s) 810
MunI CAATTG 4 cut(s) 1991, 3034, 3300, 3927
Mva1269I GAATGC 1 cut(s) 4532
MvaI CCWGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
MwoI GCNNNNNNNGC 9 cut(s) 892, 1593, 2664, 3056, 3686, 3929, 4233, 4310, 4319
NlaIV GGNNCC 7 cut(s) 504, 2048, 2321, 2903, 3287, 3344, 3619
NmeAIII GCCGAG 1 cut(s) 4170
NmuCI GTSAC 5 cut(s) 1813, 2343, 2918, 3656, 4148
NsiI ATGCAT 1 cut(s) 2304
NspI RCATGY 4 cut(s) 492, 2136, 3135, 3951
NspV TTCGAA 2 cut(s) 989, 3263
OliI CACNNNNGTG 1 cut(s) 4501
PaeI GCATGC 1 cut(s) 2136
PagI TCATGA 2 cut(s) 1624, 3940
PceI AGGCCT 3 cut(s) 3975, 4013, 4568
PciI ACATGT 1 cut(s) 3131
PcsI WCGNNNNNNNCGW 2 cut(s) 435, 1735
PctI GAATGC 1 cut(s) 4532
PdmI GAANNNNTTC 2 cut(s) 15, 570
PflMI CCANNNNNTGG 2 cut(s) 581, 1703
PfoI TCCNGGA 2 cut(s) 2904, 4326
PkrI GCNGC 9 cut(s) 50, 294, 468, 1246, 1519, 2240, 2638, 3519, 4106
Ple19I CGATCG 1 cut(s) 4171
PleI GAGTC 8 cut(s) 244, 717, 1336, 1800, 2346, 2708, 2904, 4155
PmaCI CACGTG 1 cut(s) 1813
PmeI GTTTAAAC 1 cut(s) 810
PmlI CACGTG 1 cut(s) 1813
PpsI GAGTC 8 cut(s) 244, 717, 1336, 1800, 2346, 2708, 2904, 4155
Ppu21I YACGTR 2 cut(s) 1813, 3686
PscI ACATGT 1 cut(s) 3131
PshBI ATTAAT 2 cut(s) 2826, 3420
Psp1406I AACGTT 1 cut(s) 389
Psp6I CCWGG 8 cut(s) 337, 881, 1142, 2440, 2904, 3288, 3444, 4326
PspCI CACGTG 1 cut(s) 1813
PspFI CCCAGC 1 cut(s) 4366
PspGI CCWGG 8 cut(s) 337, 881, 1142, 2440, 2904, 3288, 3444, 4326
PspN4I GGNNCC 7 cut(s) 504, 2048, 2321, 2903, 3287, 3344, 3619
PspPI GGNCC 4 cut(s) 1140, 1670, 2047, 2319
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 5 cut(s) 524, 874, 1618, 3106, 4210
PvuI CGATCG 1 cut(s) 4171
RsaI GTAC 9 cut(s) 153, 730, 946, 1074, 1369, 1429, 2379, 2608, 3787
RsaNI GTAC 9 cut(s) 152, 729, 945, 1073, 1368, 1428, 2378, 2607, 3786
RseI CAYNNNNRTG 6 cut(s) 2067, 2172, 3336, 3963, 4501, 4584
SalI GTCGAC 2 cut(s) 1918, 3482
SatI GCNGC 9 cut(s) 49, 293, 467, 1245, 1518, 2239, 2637, 3518, 4105
Sau96I GGNCC 4 cut(s) 1140, 1670, 2047, 2319
ScaI AGTACT 2 cut(s) 1369, 1429
SchI GAGTC 8 cut(s) 245, 718, 1337, 1801, 2346, 2708, 2905, 4156
ScrFI CCNGG 8 cut(s) 339, 883, 1144, 2442, 2906, 3290, 3446, 4328
SduI GDGCHC 8 cut(s) 681, 1183, 1210, 2123, 2655, 3288, 3345, 3378
SfcI CTRYAG 2 cut(s) 630, 2840
SfuI TTCGAA 2 cut(s) 989, 3263
SinI GGWCC 3 cut(s) 1140, 1670, 2319
SmiMI CAYNNNNRTG 6 cut(s) 2067, 2172, 3336, 3963, 4501, 4584
SmlI CTYRAG 6 cut(s) 127, 461, 520, 2220, 3377, 3503
SmoI CTYRAG 6 cut(s) 127, 461, 520, 2220, 3377, 3503
SpeI ACTAGT 3 cut(s) 731, 947, 1967
SphI GCATGC 1 cut(s) 2136
SseBI AGGCCT 3 cut(s) 3975, 4013, 4568
SsiI CCGC 9 cut(s) 837, 1053, 1307, 1594, 2041, 2186, 2239, 2463, 4594
SspI AATATT 1 cut(s) 1382
StuI AGGCCT 3 cut(s) 3975, 4013, 4568
StyD4I CCNGG 8 cut(s) 337, 881, 1142, 2440, 2904, 3288, 3444, 4326
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 9 cut(s) 612, 676, 815, 1652, 2140, 2918, 3452, 3548, 4286
TaiI ACGT 9 cut(s) 392, 959, 1633, 1815, 2007, 2129, 2383, 3688, 4655
TaqII GACCGA 1 cut(s) 1128
TatI WGTACW 6 cut(s) 151, 728, 944, 1367, 1427, 2606
TauI GCSGC 1 cut(s) 2241
TseFI GTSAC 5 cut(s) 1813, 2343, 2918, 3656, 4148
TseI GCWGC 8 cut(s) 48, 292, 466, 1244, 1517, 2636, 3517, 4104
Tsp45I GTSAC 5 cut(s) 1813, 2343, 2918, 3656, 4148
TspGWI ACGGA 6 cut(s) 1905, 2148, 2568, 2663, 3335, 3688
Van91I CCANNNNNTGG 2 cut(s) 581, 1703
Vha464I CTTAAG 1 cut(s) 127
VpaK11BI GGWCC 3 cut(s) 1140, 1670, 2319
VspI ATTAAT 2 cut(s) 2826, 3420
XbaI TCTAGA 2 cut(s) 3589, 4213
XceI RCATGY 4 cut(s) 492, 2136, 3135, 3951
XcmI CCANNNNNNNNNTGG 1 cut(s) 1680
XmiI GTMKAC 5 cut(s) 1919, 2264, 2478, 3483, 4182
XmnI GAANNNNTTC 2 cut(s) 15, 570
ZraI GACGTC 1 cut(s) 4653
ZrmI AGTACT 2 cut(s) 1369, 1429
Zsp2I ATGCAT 1 cut(s) 2304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.