RchiOBHm_Chr4g0429701

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
54446897 .. 54454787
7891 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39847

Sequence Viewer

Length: 5328 bp
ATGTTTCTTCTGACGATGAAGCCTCAAAACAGAGACCCTTTCCACCACAAACCTTCCCATCTGGAATTTGAGCCGACCCCAATTCCCATCTACAGTGAAGCGGTGAATTTCAATCCCAAACTGCACTGGTTCTTCAACTCACTGAAGAAACCCAAGAGCTCCTCACGCTTACCTATTCCTTCGACCAATCAATGCAAATTTGATGTCTTCCTGAGTTTTAGAGGCAGTGACACTCGCAAAAATTTTACTGATCATTTATACACAGCTTTACATCAGAAAGGAATCCTCGCCTTCAAGGATGATGAAGAACTCCAAAGGGGGAGAGCCATTTCACCAGAACTCTTTAAAGCAATTGAAGAATCAAGAATCGCAGTTGTCATATTCTCAAGAAACTACGCTTCTTCCACCTGGTGTTTGGATGAACTTGCCAAGATTGTTGATTGCGCTAATAGCTCTGGACTTGTTGTGTTGCCAATCTTCTATGACCTGCGACCAACCGATGTACGACAGCAGACAGGAAATTTTGAGGCAGCGTTTGCTGGACATGAACTTTCCAAAGACAACAGGGAGAAGGTGAAAACATGGAGGCAAGCTTTGACTCAAGTAGCAAACCTCTCTGGATGGGATTTAAAAGACAGGCATGAGACAAAGGTCATTGAAGAAATCGTGGAACATATTTCTAGTCATCTGAATTTCACATTCCCAACCTGTCACTCCAAAAATATTGTTGGGATGCATCGTGTGAGGGAAATTGAATCAGACCTAGGTGTAGGCAAGTTGGATGAACTTCGTGTTATTGGCATTTGTGGTATGCCTGGAATTGGTAAGACAACCATTGCACAAGTTGTTTTTGAAAATATTCACCAGAAATTTGAAGCTAGCAGTTTCATTGCTAATGTTGGAGAGGACTATGAAAAGAAAGGTTTGTTCCATCTTCAGAAACAACTTTTTGATGACTTGTTGAAGACCAAAGTAACCACGGCGATTCTCAATAATGTGAGGCAGAGATTGCGTAACAAGAGGGTGCTTATCATTCTTGATGACGTGAAGGAGTTGGAACATATAGTGGACCTAGTTGGAGAGGGCTCTAGTGAAGAGTTCGGTGCAGGTAGTAGAATCATCATAACCACAAGAGATGAAAAGTTGTTGGAGAATTATGGGTCCAAAATACACAAGGTTGAAAAGCTTACTGAAAGTGAGTCTCTTCTCCTCTTCTGTCAGAAAGCCTTTAAGAAAGATCATCCTGTTGATGATTTTCTTGAGTTGTCTTACAGTTTTACAGATTACGCTAATGGCCTTCCTCTGGCTCTTGTAGTTTTGGGTTCATACCTATACCGAAGAAATGCGAAAGACTGGTCTGTTGAAAAGAAAAGATGGTCTGATGAACTGAAAAAATTAAGAGATAGCAACTTTTCTGGTCCAGAAAAAATATTCAATATTTTAAAACTATGTTTTTTTGGATTAGACATGGCAGCAAAGGAGATATTTTTGGACATTGCTTGTTTCTTCAAAGGAGAGAATGAAACTGATGTAAGAAGGATATTTGAAAGTTGTGGCTTCTATCCAGAGTGTTGTATACCAAGCCTTCTTGAGAAATCCCTGATAACTATTGTAGGAGGAAAATTGTGGATGCACGAGTTACTACAACAAACTGGCCAGCAAATAGTCCGTGAAGAATCCAAATGGTTAGGGGAACGCAGCAGGTTGTGGGATCATACAGATATTGTTCCTGTCCTTCAGAACAATAAGGGGACAGAACTTGTTAAAGGTATTTTCCTCAGCTCACCTCAACAAGCCAGAGTGCACTTGAAGGCAGACCCTTTCTCAGAGATGCGCAACTTAAGACTGCTGAAGATTAAGAATGTGATATTGTCTGGATGCCTTGAGTTCACTCTTTCGGATCTGTTAAGCTTCTTCGAATGGCATGGATATCCTTTAAAATTTCTGCCCTCAAGTTTTAGACCGGATAAACTTGTTGAATTGCACTTGCCTCAAAGCCAAATAGAGCGACTATGGGAGGAAAATATCAAGCAGCCTCTGGAAATGTTGGTAATTGTAGACCTTAGTGACTGTGAATTCTTGACCAAGACCCTTGACTTCAGTCAAGTCCCGAAGCTGGAGAGGCTAATCCTTAAAGGTTGTAAAAGATTGTCTGATATTCACCCATCAATTGGAGATCTCAAAGGGCTCATTTCCTTGAATCTACAGGGTTGTGAATCTCTTACCACTCTTCCCCCCAGTATCAAGTTGGGATCTCTCATGACTTTCATACTTTCAGGATGTTCCAAACTGAAAAGGTTTCCGGAAATTGGAGAAAACATGAAAAATTTACTGGAACTTCATTTAGATGGGACAGCTATAGTAGAGCTACCAACATCAATTAAGCATTTGACTAGCCTCTCTCTGCTCAATTTAAAAGACTGCAAGCTCCTTCAGAGTCTTCCAGACGTAATTTGTACGTCTACATCACTCCAAACTCTCATCCTTCAAGGCTGCTCAAATTTATGCCAGTTGCCAGAAAACTTGGGGAGCTTAGAGTGTTTGAAGGTGCTTGACATAAGCAGAAGTGCTATAAGGCAGGTACCTCCCTCCATTCAATTTCTGAAAAATCTTACAGGACTATCTTGCGCCGGATGTCGAGATTTGCCTGCTGAACGCAGTTCATGGTGTTTGCCGACCTTCATTTCTTGCTTCTTGCCACCAGATTTAGCATCCAACAATTCCAGTGGTTTGCAGTTGCCTGCTTCATTCTCCGGTTTGTGCTCCTTAAGAAAATTAATTTTAAGCGATTGCAATCTGCTTGAAGGATCAATCCCTGATGACATTGGCTGCATATCCTCGTTGCAGTATCTGGATTTAAGTGGAAACAACTTTGAGACATTACCCCAAAGCATCTCTCAACTCTATCAGCTTGAAGACCTTCATTTAAATGATTGTAGAAACCTAAAATCATTGCCAACATCACTTCCTATAAGTATACGAGGTATATTTTCAGATAATTGTCCTCTCCTGGATGAAACATTTCAAGAAATAGTATGGACTTCAACTGCTTTGGGATTTAGCTTTATAAATTGCAAATACAACAAATTTTATCCCCTTCCGACAGCGGATCAGCACCTTAACCAGCAAAATATCCGAAGATTTTTAATGGAGCTATTTTCTCAGGGTGGTTGTTTTCAATTTTTTTTTGGGGCTGAAACTGATATTGCTTCATGGTTCTGTCGTCAAAGTACTAATTCGTCAATAAAAATTCCATTACCTCAAGACTTGGATGGGAAAAGTCAATGGATTGGTTTTGCTCTGTGGTTTCTTATTGAATCGGAGGTGCATGACAGTGTGGATTCAGAAGAAGATCCTCAATCCGAATATTTCAACAAGAGAAATTACAGTTGTGACATCTTCACAAATGATGAAGATCCTCCCCTAAAGTATCCACTCGCGGATCGCGATGGTCGTGAGACATATCAGCATTTGCTTTATATACCAGCAGATCATTTCGTGAAAAGGTTGAATAAATGCTTCATCGAGGCTAAAATCAACATCAAAAGAACAGGGGTGGAAGTGGTAGCATGTAGAGCGAGGCTATTGTACTCGGCAGACGTGCCAGAATTTGTCGGGACTCTGGTTCACCTTTGGAATCATGAACAAGTGGGGCATCTGGCAAATCCATCATCGAGCAAGTGCACTGATCAGTCAAAAGTTTATCCTTTTGCTTCAGAAACAAGTTTCTTGATTGAATTTGAACGCCAGATTTTCAGAAATTTAAGTTCAACCAGGATGGAAGGCCATGAAGTGAGAACAAGGGTAGAGGCATTGCTGCTTGAAGAAATATTTGAGCTGGAATCGGCACGTAGCTATGATTATGGTTTCATTTTCTCTCTTAGAGCAATTTTACCGTGGTTTACTCATCAAAGCATCGGCAGTGTAGTCCTTTCACTAAACGACCAAAGCATTGGGGGAGTAGTAGGCATGTATCTTCCGCCACTTTTACATAGCGATAACGAATGGGTAGGGTTTTCCCTATTTGTGGCCTTCACTCTGCCTCCTCCAGGTGTTTTGGCTGTAAAGTATTCTTCCGTTAACTGTCGTTTGCTTACCTCCAGAGGAATAATGGGTCCGCAGCATAACCTAACATTAGAGTTCCCCGGTGAAGACAACTTTATGGGGTCAGAGCGAGTTCTTGTTATTCATATACCTCGAAAACATTTTCCAGAAGACCTCGGTGATCGCATTCAAGCTTCTTTTGAATCCCTCACTCCAGGTGTGGAGGTTCAAATGTCTGGGATTCGTCTAGTATACCGGCAAGATTTGAATGGCTTAATCCAAACTATTACTCACTGCACTATACGCAGTCCATTTGCTTACTTCGGACAAGATGACAAAACATTTATTTTGGAAGAAAATAAGATTGGCGTACATTTGACCATGGAGAAAAGTTTGCTTCAACAAGCAAAAGACAGGATGCTTCAAGATTGGCAAAATTCTTCAACAGGTTCAAAGGTAATCACTGATCAACAAATTGAGTTGATGATACTTTCTGAAACTCCAGTCAATCCACCTAAGAAAAAACATTCAGTGATCAAGTGGAAAAGAAACCTTGACCTTTTGCTTCAATTTTTCTTTAGGCTTCCTGTTGAACTATCGGTCACTGTATGTCTCAGTCGAAACATAATCTCTTGCTCAAAACGCTATTCTGGTATTTTCTATCAAAAGGAAATTCCGGAGTGGTTCACAGAACAACAATCATCTGAGACTCTGGTGTCCCCAGTACCTACAAATCTCAGAAAGGATAAGAGTTTCCTGGGATTTGTTGTGTGCGCGGTTTTTTCAGTTGAGCCGTCTCGAGCTGACGTCCTCAAATATTTGTATTCAGGACACCATCCCAGACTTGCTTGCAATTTTCATTTGAGCCCTGAAATACCGTGTAGCTTAGAGGTTGGCAGCTTGCCTGGGACCAGTCCCAAGAACAAATTTATGTGGTTATATCTTAGACGGTTTGTCTGGCTGCAGTACATACCGGGTCATTATTTTAAGGATCACTTGAATGAACTCCCTGAGTTAGGGGTTTCATTTACGAGTGATTCCCCAGCCTTGGCTGTAAAGCAATGCGGATTCCGCATCCTATATGACCAAGAGGTCCAAAAATACTGGAAAGCAACAGTGCAGTGCTTCACTTCCTTTTTTGACGACAATGAGGATCATATTCGCCAATTCATTGAAGATGAGAGACATTCTTTTAGCATTACAAGATCTTTTGGGGTTCTCGACAACAGGACCTTGATCGCTCTTTTGAAAACCATCTCCGAAGCAACATGCTTAAACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1775

Amino Acids

202.31

Weight (kDa)

6.2

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 66 - 244 1.7e-58 TIR domain
TIR_2 PF13676 69 - 165 2e-14 TIR domain
NB-ARC PF00931 260 - 413 6.4e-23 NB-ARC domain
NACHT PF05729 264 - 396 8.1e-06 NACHT domain
WHD_ROQ1 PF23282 492 - 560 3.6e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 751 - 836 4.6e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 827 - 884 1.1e-06 Leucine-rich repeat region
LRR_14 PF23598 919 - 982 1e-07 Leucine-rich repeat region
C-JID PF20160 1570 - 1714 4.9e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3068
AasI GACNNNNNNGTC 2 cut(s) 4759, 5135
AatII GACGTC 1 cut(s) 4854
Acc16I TGCGCA 1 cut(s) 1835
Acc36I ACCTGC 4 cut(s) 495, 1097, 1692, 2569
Acc65I GGTACC 1 cut(s) 2581
AccB1I GGYRCC 1 cut(s) 2581
AccB7I CCANNNNNTGG 1 cut(s) 2171
AccI GTMKAC 5 cut(s) 1576, 2058, 2462, 2977, 4296
AccII CGCG 3 cut(s) 3440, 3447, 4820
AccIII TCCGGA 2 cut(s) 2302, 4720
AciI CCGC 8 cut(s) 101, 3107, 3440, 3980, 4118, 4820, 5109, 5116
AcoI YGGCCR 1 cut(s) 1654
AcuI CTGAAG 7 cut(s) 164, 920, 1721, 1871, 2083, 2417, 3699
AcyI GRCGYC 1 cut(s) 4851
AdeI CACNNNGTG 1 cut(s) 411
AfaI GTAC 8 cut(s) 504, 2458, 2583, 3232, 3590, 4416, 4770, 5012
AfiI CCNNNNNNNGG 9 cut(s) 821, 1303, 2116, 2171, 2309, 4027, 4049, 5060, 5092
AflII CTTAAG 2 cut(s) 1840, 2767
AhdI GACNNNNNGTC 1 cut(s) 4997
AjiI CACGTC 2 cut(s) 1045, 3601
AjnI CCWGG 8 cut(s) 407, 814, 3009, 3773, 4048, 4258, 4800, 4948
AjuI GAANNNNNNNTTGG 2 cut(s) 4392, 4424
Alw21I GWGCWC 4 cut(s) 161, 1806, 2765, 3686
Alw26I GTCTC 9 cut(s) 27, 638, 1206, 2870, 3452, 4661, 4745, 4845, 5221
Alw44I GTGCAC 2 cut(s) 1802, 3682
AlwNI CAGNNNCTG 2 cut(s) 2038, 2851
Ama87I CYCGRG 1 cut(s) 4842
Aor13HI TCCGGA 2 cut(s) 2302, 4720
AoxI GGCC 4 cut(s) 1294, 1654, 3784, 4029
ApaLI GTGCAC 2 cut(s) 1802, 3682
ArsI GACNNNNNNTTYG 4 cut(s) 189, 221, 1340, 1372
AseI ATTAAT 1 cut(s) 2777
Asp700I GAANNNNTTC 3 cut(s) 858, 2919, 3021
Asp718I GGTACC 1 cut(s) 2581
AspA2I CCTAGG 1 cut(s) 763
AspLEI GCGC 4 cut(s) 446, 1836, 2630, 4820
AspS9I GGNCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
AsuC2I CCSGG 2 cut(s) 4146, 5019
AsuHPI GGTGA 9 cut(s) 115, 324, 586, 854, 1776, 2153, 3620, 4160, 4235
AsuII TTCGAA 1 cut(s) 1917
AsuNHI GCTAGC 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 4842
AvaII GGWCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
AvrII CCTAGG 1 cut(s) 763
BaeGI GKGCMC 2 cut(s) 1806, 3686
BalI TGGCCA 1 cut(s) 1656
BanI GGYRCC 1 cut(s) 2581
BanII GRGCYC 4 cut(s) 161, 1088, 2190, 4913
BauI CACGAG 1 cut(s) 1634
BbsI GAAGAC 6 cut(s) 199, 971, 2432, 2922, 4158, 4221
Bbv12I GWGCWC 4 cut(s) 161, 1806, 2765, 3686
BbvCI CCTCAGC 1 cut(s) 1778
BceAI ACGGC 2 cut(s) 996, 4822
BciT130I CCWGG 8 cut(s) 409, 816, 3011, 3775, 4050, 4260, 4802, 4950
BciVI GTATCC 1 cut(s) 3441
BclI TGATCA 4 cut(s) 250, 3688, 4510, 4578
BcnI CCSGG 2 cut(s) 4146, 5019
BcoDI GTCTC 9 cut(s) 27, 638, 1206, 2870, 3452, 4661, 4745, 4845, 5221
BfaI CTAG 7 cut(s) 681, 764, 879, 1073, 1089, 2394, 4292
BfmI CTRYAG 4 cut(s) 91, 2204, 2358, 5006
BfrI CTTAAG 2 cut(s) 1840, 2767
BfuAI ACCTGC 4 cut(s) 495, 1097, 1692, 2569
BfuI GTATCC 1 cut(s) 3441
BglII AGATCT 2 cut(s) 2176, 5249
BlnI CCTAGG 1 cut(s) 763
BmcAI AGTACT 1 cut(s) 3232
Bme18I GGWCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
BmeRI GACNNNNNGTC 1 cut(s) 4997
BmeT110I CYCGRG 1 cut(s) 4842
BmgBI CACGTC 2 cut(s) 1045, 3601
BmgT120I GGNCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
BmiI GGNNCC 4 cut(s) 1162, 2583, 4116, 4954
BmrI ACTGGG 2 cut(s) 2232, 4760
BmtI GCTAGC 1 cut(s) 882
BmuI ACTGGG 2 cut(s) 2232, 4760
BoxI GACNNNNGTC 2 cut(s) 650, 2100
BpiI GAAGAC 6 cut(s) 199, 971, 2432, 2922, 4158, 4221
BpmI CTGGAG 5 cut(s) 2138, 4032, 4084, 4242, 4530
Bpu10I CCTNAGC 1 cut(s) 1778
Bpu14I TTCGAA 1 cut(s) 1917
BpuEI CTTGAG 7 cut(s) 370, 585, 1280, 1610, 1904, 1936, 3246
BpuMI CCSGG 2 cut(s) 4146, 5019
BsaAI YACGTR 1 cut(s) 3851
BsaBI GATNNNNATC 2 cut(s) 2793, 3414
BsaHI GRCGYC 1 cut(s) 4851
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 9 cut(s) 763, 978, 3896, 4144, 4219, 4425, 4801, 4949, 5091
BsaWI WCCGGW 4 cut(s) 1963, 2302, 2753, 4720
BsaXI ACNNNNNCTCC 2 cut(s) 4027, 4057
Bsc4I CCNNNNNNNGG 9 cut(s) 821, 1303, 2116, 2171, 2309, 4027, 4049, 5060, 5092
Bse118I RCCGGY 1 cut(s) 4299
Bse3DI GCAATG 6 cut(s) 834, 888, 1494, 2951, 3812, 5111
Bse8I GATNNNNATC 2 cut(s) 2793, 3414
BseAI TCCGGA 2 cut(s) 2302, 4720
BseBI CCWGG 8 cut(s) 409, 816, 3011, 3775, 4050, 4260, 4802, 4950
BseDI CCNNGG 9 cut(s) 763, 978, 3896, 4144, 4219, 4425, 4801, 4949, 5091
BseJI GATNNNNATC 2 cut(s) 2793, 3414
BseLI CCNNNNNNNGG 9 cut(s) 821, 1303, 2116, 2171, 2309, 4027, 4049, 5060, 5092
BseMI GCAATG 6 cut(s) 834, 888, 1494, 2951, 3812, 5111
BseMII CTCAG 8 cut(s) 203, 1792, 1839, 3176, 4672, 4740, 4795, 5046
BseRI GAGGAG 3 cut(s) 151, 1199, 4035
BseSI GKGCMC 2 cut(s) 1806, 3686
BseYI CCCAGC 1 cut(s) 5086
BsgI GTGCAG 4 cut(s) 107, 1125, 4324, 5183
Bsh1236I CGCG 3 cut(s) 3440, 3447, 4820
BshFI GGCC 4 cut(s) 1296, 1656, 3786, 4031
BshNI GGYRCC 1 cut(s) 2581
BsiHKAI GWGCWC 4 cut(s) 161, 1806, 2765, 3686
BsiHKCI CYCGRG 1 cut(s) 4842
BsiSI CCGG 8 cut(s) 1964, 2303, 2631, 2754, 4146, 4300, 4721, 5018
BslFI GGGAC 7 cut(s) 1765, 2093, 2365, 3631, 4747, 4944, 4966
BslI CCNNNNNNNGG 9 cut(s) 821, 1303, 2116, 2171, 2309, 4027, 4049, 5060, 5092
BsmAI GTCTC 9 cut(s) 27, 638, 1206, 2870, 3452, 4661, 4745, 4845, 5221
BsmBI CGTCTC 1 cut(s) 4845
BsmFI GGGAC 7 cut(s) 1765, 2093, 2365, 3631, 4747, 4944, 4966
BsmI GAATGC 1 cut(s) 4230
BsnI GGCC 4 cut(s) 1296, 1656, 3786, 4031
Bso31I GGTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 4842
Bsp119I TTCGAA 1 cut(s) 1917
Bsp1286I GDGCHC 7 cut(s) 161, 1088, 1806, 2190, 2765, 3686, 4913
Bsp13I TCCGGA 2 cut(s) 2302, 4720
Bsp19I CCATGG 1 cut(s) 4425
Bsp68I TCGCGA 1 cut(s) 3447
BspACI CCGC 8 cut(s) 101, 3107, 3440, 3980, 4118, 4820, 5109, 5116
BspANI GGCC 4 cut(s) 1296, 1656, 3786, 4031
BspCNI CTCAG 8 cut(s) 204, 1791, 1838, 3175, 4671, 4741, 4794, 5047
BspEI TCCGGA 2 cut(s) 2302, 4720
BspFNI CGCG 3 cut(s) 3440, 3447, 4820
BspHI TCATGA 2 cut(s) 2259, 3640
BspLI GGNNCC 4 cut(s) 1162, 2583, 4116, 4954
BspMAI CTGCAG 1 cut(s) 5010
BspMI ACCTGC 4 cut(s) 495, 1097, 1692, 2569
BspOI GCTAGC 1 cut(s) 882
BspT104I TTCGAA 1 cut(s) 1917
BspT107I GGYRCC 1 cut(s) 2581
BspTI CTTAAG 2 cut(s) 1840, 2767
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 6 cut(s) 834, 888, 1494, 2951, 3812, 5111
BsrFI RCCGGY 1 cut(s) 4299
BssAI RCCGGY 1 cut(s) 4299
BssECI CCNNGG 9 cut(s) 763, 978, 3896, 4144, 4219, 4425, 4801, 4949, 5091
BssNAI GTATAC 3 cut(s) 1577, 2978, 4297
BssNI GRCGYC 1 cut(s) 4851
BssSI CACGAG 1 cut(s) 1634
BssT1I CCWWGG 3 cut(s) 763, 4425, 5091
Bst1107I GTATAC 3 cut(s) 1577, 2978, 4297
Bst2BI CACGAG 1 cut(s) 1634
Bst2UI CCWGG 8 cut(s) 409, 816, 3011, 3775, 4050, 4260, 4802, 4950
Bst6I CTCTTC 4 cut(s) 1089, 1209, 1217, 2235
BstACI GRCGYC 1 cut(s) 4851
BstAFI CTTAAG 2 cut(s) 1840, 2767
BstAPI GCANNNNNTGC 2 cut(s) 536, 1009
BstBAI YACGTR 1 cut(s) 3851
BstBI TTCGAA 1 cut(s) 1917
BstC8I GCNNGC 8 cut(s) 591, 880, 1658, 2426, 2649, 2742, 4894, 4946
BstDSI CCRYGG 3 cut(s) 978, 3896, 4425
BstENI CCTNNNNNAGG 2 cut(s) 4047, 5058
BstFNI CGCG 3 cut(s) 3440, 3447, 4820
BstHHI GCGC 4 cut(s) 446, 1836, 2630, 4820
BstMAI GTCTC 9 cut(s) 27, 638, 1206, 2870, 3452, 4661, 4745, 4845, 5221
BstMWI GCNNNNNNNGC 9 cut(s) 165, 450, 536, 1009, 2122, 3575, 4347, 4686, 5115
BstNI CCWGG 8 cut(s) 409, 816, 3011, 3775, 4050, 4260, 4802, 4950
BstNSI RCATGY 3 cut(s) 3573, 3973, 5316
BstPAI GACNNNNGTC 2 cut(s) 650, 2100
BstSFI CTRYAG 4 cut(s) 91, 2204, 2358, 5006
BstSLI GKGCMC 2 cut(s) 1806, 3686
BstUI CGCG 3 cut(s) 3440, 3447, 4820
BstV2I GAAGAC 6 cut(s) 199, 971, 2432, 2922, 4158, 4221
BstX2I RGATCY 6 cut(s) 1900, 2176, 2252, 3352, 3415, 5249
BstXI CCANNNNNNTGG 1 cut(s) 3953
BstYI RGATCY 6 cut(s) 1900, 2176, 2252, 3352, 3415, 5249
BstZ17I GTATAC 3 cut(s) 1577, 2978, 4297
BsuI GTATCC 1 cut(s) 3441
BsuRI GGCC 4 cut(s) 1296, 1656, 3786, 4031
BtgI CCRYGG 3 cut(s) 978, 3896, 4425
BtgZI GCGATG 1 cut(s) 3462
BtrI CACGTC 2 cut(s) 1045, 3601
BtsI GCAGTG 4 cut(s) 232, 3928, 4336, 5171
BtuMI TCGCGA 1 cut(s) 3447
BveI ACCTGC 4 cut(s) 495, 1097, 1692, 2569
Cac8I GCNNGC 8 cut(s) 591, 880, 1658, 2426, 2649, 2742, 4894, 4946
CaiI CAGNNNCTG 2 cut(s) 2038, 2851
CciI TCATGA 2 cut(s) 2259, 3640
CfoI GCGC 4 cut(s) 446, 1836, 2630, 4820
Cfr10I RCCGGY 1 cut(s) 4299
Cfr13I GGNCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
CsiI ACCWGGT 1 cut(s) 407
Csp6I GTAC 8 cut(s) 503, 2457, 2582, 3231, 3589, 4415, 4769, 5011
CspCI CAANNNNNGTGG 2 cut(s) 2707, 2742
CviQI GTAC 8 cut(s) 503, 2457, 2582, 3231, 3589, 4415, 4769, 5011
DraI TTTAAA 6 cut(s) 346, 630, 1443, 1938, 2415, 2928
DraIII CACNNNGTG 1 cut(s) 411
DrdI GACNNNNNNGTC 2 cut(s) 4759, 5135
DriI GACNNNNNGTC 1 cut(s) 4997
DseDI GACNNNNNNGTC 2 cut(s) 4759, 5135
EaeI YGGCCR 1 cut(s) 1654
Eam1104I CTCTTC 4 cut(s) 1089, 1209, 1217, 2235
Eam1105I GACNNNNNGTC 1 cut(s) 4997
EarI CTCTTC 4 cut(s) 1089, 1209, 1217, 2235
EciI GGCGGA 1 cut(s) 3969
Ecl136II GAGCTC 1 cut(s) 159
Eco130I CCWWGG 3 cut(s) 763, 4425, 5091
Eco24I GRGCYC 4 cut(s) 161, 1088, 2190, 4913
Eco31I GGTCTC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 1931
Eco47I GGWCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
Eco53kI GAGCTC 1 cut(s) 159
Eco57I CTGAAG 7 cut(s) 164, 920, 1721, 1871, 2083, 2417, 3699
Eco88I CYCGRG 1 cut(s) 4842
EcoICRI GAGCTC 1 cut(s) 159
EcoNI CCTNNNNNAGG 2 cut(s) 4047, 5058
EcoO109I RGGNCCY 1 cut(s) 5274
EcoRI GAATTC 1 cut(s) 2075
EcoRII CCWGG 8 cut(s) 407, 814, 3009, 3773, 4048, 4258, 4800, 4948
EcoRV GATATC 1 cut(s) 1931
EcoT14I CCWWGG 3 cut(s) 763, 4425, 5091
EcoT22I ATGCAT 1 cut(s) 738
EcoT38I GRGCYC 4 cut(s) 161, 1088, 2190, 4913
ErhI CCWWGG 3 cut(s) 763, 4425, 5091
Esp3I CGTCTC 1 cut(s) 4845
FalI AAGNNNNNCTT 2 cut(s) 5024, 5056
FaqI GGGAC 7 cut(s) 1765, 2093, 2365, 3631, 4747, 4944, 4966
FbaI TGATCA 4 cut(s) 250, 3688, 4510, 4578
FblI GTMKAC 5 cut(s) 1576, 2058, 2462, 2977, 4296
FriOI GRGCYC 4 cut(s) 161, 1088, 2190, 4913
FspBI CTAG 7 cut(s) 681, 764, 879, 1073, 1089, 2394, 4292
FspI TGCGCA 1 cut(s) 1835
GlaI GCGC 4 cut(s) 445, 1835, 2629, 4819
GsaI CCCAGC 1 cut(s) 5090
GsuI CTGGAG 5 cut(s) 2138, 4032, 4084, 4242, 4530
HaeIII GGCC 4 cut(s) 1296, 1656, 3786, 4031
HapII CCGG 8 cut(s) 1964, 2303, 2631, 2754, 4146, 4300, 4721, 5018
HhaI GCGC 4 cut(s) 446, 1836, 2630, 4820
Hin1I GRCGYC 1 cut(s) 4851
Hin6I GCGC 4 cut(s) 444, 1834, 2628, 4818
HinP1I GCGC 4 cut(s) 444, 1834, 2628, 4818
HincII GTYRAC 1 cut(s) 4081
HindII GTYRAC 1 cut(s) 4081
HindIII AAGCTT 4 cut(s) 591, 1184, 1909, 4236
HpaI GTTAAC 1 cut(s) 4081
HpaII CCGG 8 cut(s) 1964, 2303, 2631, 2754, 4146, 4300, 4721, 5018
HphI GGTGA 9 cut(s) 115, 324, 586, 854, 1776, 2153, 3620, 4160, 4235
HpyCH4IV ACGT 6 cut(s) 1044, 2448, 2459, 3600, 3850, 4851
HpyF10VI GCNNNNNNNGC 9 cut(s) 165, 450, 536, 1009, 2122, 3575, 4347, 4686, 5115
HpySE526I ACGT 6 cut(s) 1044, 2448, 2459, 3600, 3850, 4851
Hsp92I GRCGYC 1 cut(s) 4851
HspAI GCGC 4 cut(s) 444, 1834, 2628, 4818
Kpn2I TCCGGA 2 cut(s) 2302, 4720
KpnI GGTACC 1 cut(s) 2585
Ksp22I TGATCA 4 cut(s) 250, 3688, 4510, 4578
KspAI GTTAAC 1 cut(s) 4081
LmnI GCTCC 5 cut(s) 164, 2433, 2529, 2768, 3151
MabI ACCWGGT 1 cut(s) 407
MaeI CTAG 7 cut(s) 681, 764, 879, 1073, 1089, 2394, 4292
MaeII ACGT 6 cut(s) 1044, 2448, 2459, 3600, 3850, 4851
MaeIII GTNAC 8 cut(s) 227, 710, 973, 1013, 1638, 2066, 3392, 4645
MfeI CAATTG 2 cut(s) 351, 2169
MflI RGATCY 6 cut(s) 1900, 2176, 2252, 3352, 3415, 5249
MhlI GDGCHC 7 cut(s) 161, 1088, 1806, 2190, 2765, 3686, 4913
MlsI TGGCCA 1 cut(s) 1656
MluNI TGGCCA 1 cut(s) 1656
MlyI GAGTC 5 cut(s) 592, 1208, 2446, 3613, 4747
MmeI TCCRAC 7 cut(s) 759, 880, 1035, 1057, 1128, 2739, 3125
Mox20I TGGCCA 1 cut(s) 1656
Mph1103I ATGCAT 1 cut(s) 738
MroI TCCGGA 2 cut(s) 2302, 4720
MroXI GAANNNNTTC 3 cut(s) 858, 2919, 3021
MscI TGGCCA 1 cut(s) 1656
MslI CAYNNNNRTG 4 cut(s) 2346, 2928, 3333, 5043
Msp20I TGGCCA 1 cut(s) 1656
MspA1I CMGCKG 1 cut(s) 3107
MspCI CTTAAG 2 cut(s) 1840, 2767
MspI CCGG 8 cut(s) 1964, 2303, 2631, 2754, 4146, 4300, 4721, 5018
MunI CAATTG 2 cut(s) 351, 2169
Mva1269I GAATGC 1 cut(s) 4230
MvaI CCWGG 8 cut(s) 409, 816, 3011, 3775, 4050, 4260, 4802, 4950
MvnI CGCG 3 cut(s) 3440, 3447, 4820
MwoI GCNNNNNNNGC 9 cut(s) 165, 450, 536, 1009, 2122, 3575, 4347, 4686, 5115
NciI CCSGG 2 cut(s) 4146, 5019
NcoI CCATGG 1 cut(s) 4425
NheI GCTAGC 1 cut(s) 878
NlaIV GGNNCC 4 cut(s) 1162, 2583, 4116, 4954
NmeAIII GCCGAG 1 cut(s) 3572
NmuCI GTSAC 5 cut(s) 227, 710, 2066, 3392, 4645
NruI TCGCGA 1 cut(s) 3447
NsbI TGCGCA 1 cut(s) 1835
NsiI ATGCAT 1 cut(s) 738
NspI RCATGY 3 cut(s) 3573, 3973, 5316
NspV TTCGAA 1 cut(s) 1917
PaeR7I CTCGAG 1 cut(s) 4842
PagI TCATGA 2 cut(s) 2259, 3640
PcsI WCGNNNNNNNCGW 2 cut(s) 3444, 3451
PctI GAATGC 1 cut(s) 4230
PdmI GAANNNNTTC 3 cut(s) 858, 2919, 3021
PflMI CCANNNNNTGG 1 cut(s) 2171
PfoI TCCNGGA 1 cut(s) 3009
PleI GAGTC 5 cut(s) 592, 1207, 2445, 3613, 4747
PpsI GAGTC 5 cut(s) 592, 1207, 2445, 3613, 4747
Ppu21I YACGTR 1 cut(s) 3851
PpuMI RGGWCCY 1 cut(s) 5274
PshAI GACNNNNGTC 2 cut(s) 650, 2100
PshBI ATTAAT 1 cut(s) 2777
PsiI TTATAA 1 cut(s) 3068
Psp124BI GAGCTC 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 5274
Psp6I CCWGG 8 cut(s) 407, 814, 3009, 3773, 4048, 4258, 4800, 4948
PspFI CCCAGC 1 cut(s) 5086
PspGI CCWGG 8 cut(s) 407, 814, 3009, 3773, 4048, 4258, 4800, 4948
PspN4I GGNNCC 4 cut(s) 1162, 2583, 4116, 4954
PspPI GGNCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
PspPPI RGGWCCY 1 cut(s) 5274
PstI CTGCAG 1 cut(s) 5010
PstNI CAGNNNCTG 2 cut(s) 2038, 2851
PsuI RGATCY 6 cut(s) 1900, 2176, 2252, 3352, 3415, 5249
RruI TCGCGA 1 cut(s) 3447
RsaI GTAC 8 cut(s) 504, 2458, 2583, 3232, 3590, 4416, 4770, 5012
RsaNI GTAC 8 cut(s) 503, 2457, 2582, 3231, 3589, 4415, 4769, 5011
RseI CAYNNNNRTG 4 cut(s) 2346, 2928, 3333, 5043
SacI GAGCTC 1 cut(s) 161
Sau96I GGNCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
ScaI AGTACT 1 cut(s) 3232
SchI GAGTC 5 cut(s) 592, 1208, 2446, 3613, 4747
SduI GDGCHC 7 cut(s) 161, 1088, 1806, 2190, 2765, 3686, 4913
SexAI ACCWGGT 1 cut(s) 407
SfcI CTRYAG 4 cut(s) 91, 2204, 2358, 5006
Sfr274I CTCGAG 1 cut(s) 4842
SfuI TTCGAA 1 cut(s) 1917
SinI GGWCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
SlaI CTCGAG 1 cut(s) 4842
SmiI ATTTAAAT 1 cut(s) 2928
SmiMI CAYNNNNRTG 4 cut(s) 2346, 2928, 3333, 5043
SsiI CCGC 8 cut(s) 101, 3107, 3440, 3980, 4118, 4820, 5109, 5116
SspI AATATT 7 cut(s) 724, 859, 1431, 1438, 3368, 3831, 4862
SspMI CTAG 7 cut(s) 681, 764, 879, 1073, 1089, 2394, 4292
SstI GAGCTC 1 cut(s) 161
StyI CCWWGG 3 cut(s) 763, 4425, 5091
SwaI ATTTAAAT 1 cut(s) 2928
TaiI ACGT 6 cut(s) 1047, 2451, 2462, 3603, 3853, 4854
TaqI TCGA 9 cut(s) 182, 1917, 2638, 3525, 3674, 4198, 4663, 4843, 5265
TaqII GACCGA 1 cut(s) 4633
TatI WGTACW 3 cut(s) 3230, 3588, 5010
TseFI GTSAC 5 cut(s) 227, 710, 2066, 3392, 4645
Tsp45I GTSAC 5 cut(s) 227, 710, 2066, 3392, 4645
TspGWI ACGGA 2 cut(s) 1658, 4066
Van91I CCANNNNNTGG 1 cut(s) 2171
Vha464I CTTAAG 2 cut(s) 1840, 2767
VneI GTGCAC 2 cut(s) 1802, 3682
VpaK11BI GGWCC 7 cut(s) 1069, 1161, 1418, 4115, 4953, 5137, 5274
VspI ATTAAT 1 cut(s) 2777
XagI CCTNNNNNAGG 2 cut(s) 4047, 5058
XceI RCATGY 3 cut(s) 3573, 3973, 5316
XcmI CCANNNNNNNNNTGG 3 cut(s) 412, 2245, 4108
XhoI CTCGAG 1 cut(s) 4842
XmaJI CCTAGG 1 cut(s) 763
XmiI GTMKAC 5 cut(s) 1576, 2058, 2462, 2977, 4296
XmnI GAANNNNTTC 3 cut(s) 858, 2919, 3021
XspI CTAG 7 cut(s) 681, 764, 879, 1073, 1089, 2394, 4292
ZraI GACGTC 1 cut(s) 4852
ZrmI AGTACT 1 cut(s) 3232
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.