resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 190 | 3.3e-45 | TIR domain |
| TIR_2 | PF13676 | 21 - 118 | 8e-14 | TIR domain |
| NB-ARC | PF00931 | 206 - 373 | 2.1e-19 | NB-ARC domain |
| NACHT | PF05729 | 222 - 367 | 4.4e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 445 - 514 | 2e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 679 - 784 | 4.5e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 703 - 789 | 2.6e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 852 - 917 | 1.5e-06 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 854 - 911 | 3.2e-06 | Leucine rich repeat |
| C-JID | PF20160 | 1001 - 1144 | 9e-07 | C-JID domain |
| C-JID | PF20160 | 1507 - 1648 | 3.6e-09 | C-JID domain |
| C-JID | PF20160 | 1707 - 1842 | 4.9e-09 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2411 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4984 |
| Acc16I | TGCGCA | 1 cut(s) | 4633 |
| Acc36I | ACCTGC | 4 cut(s) | 2411, 2481, 4039, 4239 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 692, 1126, 2168, 4559 |
| AccI | GTMKAC | 5 cut(s) | 846, 1161, 2016, 3521, 4077 |
| AccII | CGCG | 1 cut(s) | 2970 |
| AccIII | TCCGGA | 2 cut(s) | 482, 3064 |
| AciI | CCGC | 9 cut(s) | 284, 298, 733, 2929, 2970, 3056, 3404, 5142, 6078 |
| AclWI | GGATC | 9 cut(s) | 2611, 2909, 3046, 3295, 4036, 4689, 5044, 5427, 5635 |
| AcoI | YGGCCR | 1 cut(s) | 2930 |
| AcuI | CTGAAG | 3 cut(s) | 482, 1794, 3561 |
| AcvI | CACGTG | 1 cut(s) | 5603 |
| AflIII | ACRYGT | 3 cut(s) | 144, 4706, 6129 |
| AgeI | ACCGGT | 2 cut(s) | 3999, 4491 |
| AhlI | ACTAGT | 2 cut(s) | 2081, 4130 |
| AjiI | CACGTC | 2 cut(s) | 346, 3653 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 531, 563, 4757, 4789, 5339, 5371, 5981, 6013 |
| AleI | CACNNNNGTG | 4 cut(s) | 4828, 5407, 6049, 6132 |
| Alw21I | GWGCWC | 7 cut(s) | 1668, 2901, 3737, 4349, 6129, 6192, 6312 |
| Alw26I | GTCTC | 7 cut(s) | 3684, 4746, 4922, 5164, 5441, 5970, 6242 |
| Alw44I | GTGCAC | 3 cut(s) | 1664, 6125, 6188 |
| AlwI | GGATC | 9 cut(s) | 2611, 2909, 3046, 3295, 4036, 4689, 5044, 5427, 5635 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1622, 4480 |
| Ama87I | CYCGRG | 2 cut(s) | 4223, 5444 |
| Aor13HI | TCCGGA | 2 cut(s) | 482, 3064 |
| AoxI | GGCC | 9 cut(s) | 475, 1889, 2254, 2930, 4136, 4280, 4370, 4432, 6253 |
| ApaI | GGGCCC | 1 cut(s) | 6257 |
| ApaLI | GTGCAC | 3 cut(s) | 1664, 6125, 6188 |
| AsiGI | ACCGGT | 2 cut(s) | 3999, 4491 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 522, 1083, 1527, 2815, 5325 |
| AspLEI | GCGC | 5 cut(s) | 1560, 3124, 4124, 4464, 4634 |
| AsuC2I | CCSGG | 1 cut(s) | 312 |
| AsuII | TTCGAA | 2 cut(s) | 2819, 3165 |
| AvaI | CYCGRG | 2 cut(s) | 4223, 5444 |
| AvaII | GGWCC | 6 cut(s) | 983, 2713, 2838, 3881, 4563, 5497 |
| BaeGI | GKGCMC | 4 cut(s) | 1668, 6129, 6192, 6257 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4176, 4209 |
| BanII | GRGCYC | 5 cut(s) | 312, 2901, 3737, 4349, 6257 |
| BauI | CACGAG | 3 cut(s) | 3972, 5403, 6045 |
| BbrPI | CACGTG | 1 cut(s) | 5603 |
| BbsI | GAAGAC | 6 cut(s) | 55, 1169, 2078, 3154, 3240, 4262 |
| Bbv12I | GWGCWC | 7 cut(s) | 1668, 2901, 3737, 4349, 6129, 6192, 6312 |
| BceAI | ACGGC | 7 cut(s) | 1374, 2057, 3009, 3860, 4111, 6105, 6213 |
| BciVI | GTATCC | 3 cut(s) | 2641, 3136, 5401 |
| BclI | TGATCA | 5 cut(s) | 1938, 4996, 5464, 5710, 6106 |
| BcnI | CCSGG | 1 cut(s) | 312 |
| BcoDI | GTCTC | 7 cut(s) | 3684, 4746, 4922, 5164, 5441, 5970, 6242 |
| BcuI | ACTAGT | 2 cut(s) | 2081, 4130 |
| BfmI | CTRYAG | 5 cut(s) | 663, 945, 2217, 2804, 2850 |
| BfuAI | ACCTGC | 4 cut(s) | 2411, 2481, 4039, 4239 |
| BfuI | GTATCC | 3 cut(s) | 2641, 3136, 5401 |
| BglII | AGATCT | 2 cut(s) | 2111, 2774 |
| BmcAI | AGTACT | 3 cut(s) | 3574, 3718, 6336 |
| Bme18I | GGWCC | 6 cut(s) | 983, 2713, 2838, 3881, 4563, 5497 |
| BmeT110I | CYCGRG | 2 cut(s) | 4223, 5444 |
| BmgBI | CACGTC | 2 cut(s) | 346, 3653 |
| BmiI | GGNNCC | 6 cut(s) | 1204, 3882, 4281, 4564, 5146, 6255 |
| BmrI | ACTGGG | 1 cut(s) | 3729 |
| BmuI | ACTGGG | 1 cut(s) | 3729 |
| BpiI | GAAGAC | 6 cut(s) | 55, 1169, 2078, 3154, 3240, 4262 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 442, 474 |
| BpmI | CTGGAG | 5 cut(s) | 1092, 3795, 4023, 4757, 4886 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1919, 2895, 3824 |
| Bpu14I | TTCGAA | 2 cut(s) | 2819, 3165 |
| BpuEI | CTTGAG | 7 cut(s) | 188, 342, 1472, 1994, 2128, 2729, 3732 |
| BpuMI | CCSGG | 1 cut(s) | 312 |
| BsaAI | YACGTR | 1 cut(s) | 5603 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2779, 2919, 4995 |
| BsaI | GGTCTC | 1 cut(s) | 4922 |
| BsaJI | CCNNGG | 9 cut(s) | 47, 686, 3181, 3379, 3380, 3876, 4480, 4566, 4888 |
| BsaWI | WCCGGW | 6 cut(s) | 374, 482, 3064, 3999, 4423, 4491 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3793, 3823 |
| Bse118I | RCCGGY | 3 cut(s) | 3999, 4491, 5615 |
| Bse1I | ACTGG | 8 cut(s) | 1075, 2257, 3305, 3724, 4239, 5056, 5359, 6342 |
| Bse3DI | GCAATG | 5 cut(s) | 961, 2747, 3510, 4253, 5597 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2779, 2919, 4995 |
| BseAI | TCCGGA | 2 cut(s) | 482, 3064 |
| BseDI | CCNNGG | 9 cut(s) | 47, 686, 3181, 3379, 3380, 3876, 4480, 4566, 4888 |
| BseJI | GATNNNNATC | 3 cut(s) | 2779, 2919, 4995 |
| BseMI | GCAATG | 5 cut(s) | 961, 2747, 3510, 4253, 5597 |
| BseMII | CTCAG | 8 cut(s) | 59, 1131, 2001, 2717, 2886, 4332, 5163, 5238 |
| BseNI | ACTGG | 8 cut(s) | 1075, 2257, 3305, 3724, 4239, 5056, 5359, 6342 |
| BseRI | GAGGAG | 2 cut(s) | 10, 5137 |
| BseSI | GKGCMC | 4 cut(s) | 1668, 6129, 6192, 6257 |
| BsgI | GTGCAG | 2 cut(s) | 4067, 5965 |
| Bsh1236I | CGCG | 1 cut(s) | 2970 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4888 |
| BshFI | GGCC | 9 cut(s) | 477, 1891, 2256, 2932, 4138, 4282, 4372, 4434, 6255 |
| BshTI | ACCGGT | 2 cut(s) | 3999, 4491 |
| BsiEI | CGRYCG | 1 cut(s) | 4888 |
| BsiHKAI | GWGCWC | 7 cut(s) | 1668, 2901, 3737, 4349, 6129, 6192, 6312 |
| BsiHKCI | CYCGRG | 2 cut(s) | 4223, 5444 |
| BsiSI | CCGG | 9 cut(s) | 312, 375, 483, 2378, 3065, 4000, 4424, 4492, 5616 |
| BslFI | GGGAC | 5 cut(s) | 1525, 1627, 2224, 2517, 3234 |
| BsmAI | GTCTC | 7 cut(s) | 3684, 4746, 4922, 5164, 5441, 5970, 6242 |
| BsmBI | CGTCTC | 1 cut(s) | 6242 |
| BsmFI | GGGAC | 5 cut(s) | 1525, 1627, 2224, 2517, 3234 |
| BsmI | GAATGC | 5 cut(s) | 2078, 4011, 5438, 5612, 6080 |
| BsnI | GGCC | 9 cut(s) | 477, 1891, 2256, 2932, 4138, 4282, 4372, 4434, 6255 |
| Bso31I | GGTCTC | 1 cut(s) | 4922 |
| BsoBI | CYCGRG | 2 cut(s) | 4223, 5444 |
| Bsp119I | TTCGAA | 2 cut(s) | 2819, 3165 |
| Bsp120I | GGGCCC | 1 cut(s) | 6253 |
| Bsp1286I | GDGCHC | 9 cut(s) | 312, 1668, 2901, 3737, 4349, 6129, 6192, 6257, 6312 |
| Bsp13I | TCCGGA | 2 cut(s) | 482, 3064 |
| BspACI | CCGC | 9 cut(s) | 284, 298, 733, 2929, 2970, 3056, 3404, 5142, 6078 |
| BspANI | GGCC | 9 cut(s) | 477, 1891, 2256, 2932, 4138, 4282, 4372, 4434, 6255 |
| BspCNI | CTCAG | 8 cut(s) | 60, 1132, 2002, 2716, 2887, 4333, 5162, 5237 |
| BspEI | TCCGGA | 2 cut(s) | 482, 3064 |
| BspFNI | CGCG | 1 cut(s) | 2970 |
| BspHI | TCATGA | 2 cut(s) | 3130, 5467 |
| BspLI | GGNNCC | 6 cut(s) | 1204, 3882, 4281, 4564, 5146, 6255 |
| BspMAI | CTGCAG | 1 cut(s) | 2854 |
| BspMI | ACCTGC | 4 cut(s) | 2411, 2481, 4039, 4239 |
| BspPI | GGATC | 9 cut(s) | 2611, 2909, 3046, 3295, 4036, 4689, 5044, 5427, 5635 |
| BspQI | GCTCTTC | 3 cut(s) | 1089, 1097, 2217 |
| BspT104I | TTCGAA | 2 cut(s) | 2819, 3165 |
| BspTNI | GGTCTC | 1 cut(s) | 4922 |
| BsrDI | GCAATG | 5 cut(s) | 961, 2747, 3510, 4253, 5597 |
| BsrFI | RCCGGY | 3 cut(s) | 3999, 4491, 5615 |
| BsrI | ACTGG | 8 cut(s) | 1075, 2257, 3305, 3724, 4239, 5056, 5359, 6342 |
| BssAI | RCCGGY | 3 cut(s) | 3999, 4491, 5615 |
| BssECI | CCNNGG | 9 cut(s) | 47, 686, 3181, 3379, 3380, 3876, 4480, 4566, 4888 |
| BssNAI | GTATAC | 1 cut(s) | 4078 |
| BssSI | CACGAG | 3 cut(s) | 3972, 5403, 6045 |
| BssT1I | CCWWGG | 2 cut(s) | 47, 3181 |
| Bst1107I | GTATAC | 1 cut(s) | 4078 |
| Bst2BI | CACGAG | 3 cut(s) | 3972, 5403, 6045 |
| Bst6I | CTCTTC | 8 cut(s) | 1089, 1097, 2217, 2268, 4749, 5331, 5520, 6162 |
| BstBAI | YACGTR | 1 cut(s) | 5603 |
| BstBI | TTCGAA | 2 cut(s) | 2819, 3165 |
| BstC8I | GCNNGC | 5 cut(s) | 475, 683, 952, 2535, 4349 |
| BstDSI | CCRYGG | 2 cut(s) | 3876, 4888 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 116 |
| BstFNI | CGCG | 1 cut(s) | 2970 |
| BstHHI | GCGC | 5 cut(s) | 1560, 3124, 4124, 4464, 4634 |
| BstMAI | GTCTC | 7 cut(s) | 3684, 4746, 4922, 5164, 5441, 5970, 6242 |
| BstMCI | CGRYCG | 1 cut(s) | 4888 |
| BstNSI | RCATGY | 6 cut(s) | 685, 1365, 1389, 4462, 4710, 6133 |
| BstSFI | CTRYAG | 5 cut(s) | 663, 945, 2217, 2804, 2850 |
| BstSLI | GKGCMC | 4 cut(s) | 1668, 6129, 6192, 6257 |
| BstUI | CGCG | 1 cut(s) | 2970 |
| BstV2I | GAAGAC | 6 cut(s) | 55, 1169, 2078, 3154, 3240, 4262 |
| BstX2I | RGATCY | 3 cut(s) | 2111, 2774, 4028 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 190, 3589, 4830, 5409, 6051 |
| BstYI | RGATCY | 3 cut(s) | 2111, 2774, 4028 |
| BstZ17I | GTATAC | 1 cut(s) | 4078 |
| BsuI | GTATCC | 3 cut(s) | 2641, 3136, 5401 |
| BsuRI | GGCC | 9 cut(s) | 477, 1891, 2256, 2932, 4138, 4282, 4372, 4434, 6255 |
| BtgI | CCRYGG | 2 cut(s) | 3876, 4888 |
| BtgZI | GCGATG | 1 cut(s) | 3884 |
| BtrI | CACGTC | 2 cut(s) | 346, 3653 |
| BtsI | GCAGTG | 5 cut(s) | 2844, 4117, 4564, 4969, 5443 |
| BveI | ACCTGC | 4 cut(s) | 2411, 2481, 4039, 4239 |
| Cac8I | GCNNGC | 5 cut(s) | 475, 683, 952, 2535, 4349 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1622, 4480 |
| CciI | TCATGA | 2 cut(s) | 3130, 5467 |
| CfoI | GCGC | 5 cut(s) | 1560, 3124, 4124, 4464, 4634 |
| Cfr10I | RCCGGY | 3 cut(s) | 3999, 4491, 5615 |
| CspAI | ACCGGT | 2 cut(s) | 3999, 4491 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5157, 5192 |
| DraI | TTTAAA | 3 cut(s) | 388, 1797, 6175 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4984 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4984 |
| EaeI | YGGCCR | 1 cut(s) | 2930 |
| Eam1104I | CTCTTC | 8 cut(s) | 1089, 1097, 2217, 2268, 4749, 5331, 5520, 6162 |
| EarI | CTCTTC | 8 cut(s) | 1089, 1097, 2217, 2268, 4749, 5331, 5520, 6162 |
| Ecl136II | GAGCTC | 3 cut(s) | 2899, 3735, 4347 |
| Eco130I | CCWWGG | 2 cut(s) | 47, 3181 |
| Eco147I | AGGCCT | 1 cut(s) | 1891 |
| Eco24I | GRGCYC | 5 cut(s) | 312, 2901, 3737, 4349, 6257 |
| Eco31I | GGTCTC | 1 cut(s) | 4922 |
| Eco32I | GATATC | 1 cut(s) | 1790 |
| Eco47I | GGWCC | 6 cut(s) | 983, 2713, 2838, 3881, 4563, 5497 |
| Eco53kI | GAGCTC | 3 cut(s) | 2899, 3735, 4347 |
| Eco57I | CTGAAG | 3 cut(s) | 482, 1794, 3561 |
| Eco72I | CACGTG | 1 cut(s) | 5603 |
| Eco88I | CYCGRG | 2 cut(s) | 4223, 5444 |
| EcoICRI | GAGCTC | 3 cut(s) | 2899, 3735, 4347 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 116 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2713, 4280, 4563 |
| EcoRI | GAATTC | 3 cut(s) | 4772, 5354, 5996 |
| EcoRV | GATATC | 1 cut(s) | 1790 |
| EcoT14I | CCWWGG | 2 cut(s) | 47, 3181 |
| EcoT22I | ATGCAT | 3 cut(s) | 1387, 1497, 4071 |
| EcoT38I | GRGCYC | 5 cut(s) | 312, 2901, 3737, 4349, 6257 |
| ErhI | CCWWGG | 2 cut(s) | 47, 3181 |
| Esp3I | CGTCTC | 1 cut(s) | 6242 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 3225, 3257, 4254, 4286, 4309, 4341 |
| FaqI | GGGAC | 5 cut(s) | 1525, 1627, 2224, 2517, 3234 |
| FauI | CCCGC | 1 cut(s) | 3063 |
| FauNDI | CATATG | 2 cut(s) | 3157, 4791 |
| FbaI | TGATCA | 5 cut(s) | 1938, 4996, 5464, 5710, 6106 |
| FblI | GTMKAC | 5 cut(s) | 846, 1161, 2016, 3521, 4077 |
| FriOI | GRGCYC | 5 cut(s) | 312, 2901, 3737, 4349, 6257 |
| FspAI | RTGCGCAY | 1 cut(s) | 4633 |
| FspI | TGCGCA | 1 cut(s) | 4633 |
| GlaI | GCGC | 5 cut(s) | 1559, 3123, 4123, 4463, 4633 |
| GsuI | CTGGAG | 5 cut(s) | 1092, 3795, 4023, 4757, 4886 |
| HaeIII | GGCC | 9 cut(s) | 477, 1891, 2256, 2932, 4138, 4282, 4372, 4434, 6255 |
| HapII | CCGG | 9 cut(s) | 312, 375, 483, 2378, 3065, 4000, 4424, 4492, 5616 |
| HhaI | GCGC | 5 cut(s) | 1560, 3124, 4124, 4464, 4634 |
| Hin6I | GCGC | 5 cut(s) | 1558, 3122, 4122, 4462, 4632 |
| HinP1I | GCGC | 5 cut(s) | 1558, 3122, 4122, 4462, 4632 |
| HincII | GTYRAC | 4 cut(s) | 261, 295, 2017, 3522 |
| HindII | GTYRAC | 4 cut(s) | 261, 295, 2017, 3522 |
| HindIII | AAGCTT | 6 cut(s) | 747, 1768, 2383, 4017, 4894, 5473 |
| HpaII | CCGG | 9 cut(s) | 312, 375, 483, 2378, 3065, 4000, 4424, 4492, 5616 |
| Hpy99I | CGWCG | 3 cut(s) | 3030, 3526, 3657 |
| HspAI | GCGC | 5 cut(s) | 1558, 3122, 4122, 4462, 4632 |
| Kpn2I | TCCGGA | 2 cut(s) | 482, 3064 |
| Ksp22I | TGATCA | 5 cut(s) | 1938, 4996, 5464, 5710, 6106 |
| LguI | GCTCTTC | 3 cut(s) | 1089, 1097, 2217 |
| LmnI | GCTCC | 5 cut(s) | 3740, 4482, 5150, 5233, 5872 |
| MflI | RGATCY | 3 cut(s) | 2111, 2774, 4028 |
| MhlI | GDGCHC | 9 cut(s) | 312, 1668, 2901, 3737, 4349, 6129, 6192, 6257, 6312 |
| MlyI | GAGTC | 8 cut(s) | 312, 656, 1864, 3418, 3945, 4748, 5309, 5972 |
| MmeI | TCCRAC | 6 cut(s) | 630, 751, 2008, 3265, 5264, 5903 |
| Mph1103I | ATGCAT | 3 cut(s) | 1387, 1497, 4071 |
| MroI | TCCGGA | 2 cut(s) | 482, 3064 |
| MroXI | GAANNNNTTC | 5 cut(s) | 522, 1083, 1527, 2815, 5325 |
| MspA1I | CMGCKG | 1 cut(s) | 5142 |
| MspI | CCGG | 9 cut(s) | 312, 375, 483, 2378, 3065, 4000, 4424, 4492, 5616 |
| MssI | GTTTAAAC | 1 cut(s) | 6175 |
| Mva1269I | GAATGC | 5 cut(s) | 2078, 4011, 5438, 5612, 6080 |
| MvnI | CGCG | 1 cut(s) | 2970 |
| NciI | CCSGG | 1 cut(s) | 312 |
| NdeI | CATATG | 2 cut(s) | 3157, 4791 |
| NlaIV | GGNNCC | 6 cut(s) | 1204, 3882, 4281, 4564, 5146, 6255 |
| NmuCI | GTSAC | 5 cut(s) | 346, 2671, 3391, 4126, 5791 |
| NsbI | TGCGCA | 1 cut(s) | 4633 |
| NsiI | ATGCAT | 3 cut(s) | 1387, 1497, 4071 |
| NspI | RCATGY | 6 cut(s) | 685, 1365, 1389, 4462, 4710, 6133 |
| NspV | TTCGAA | 2 cut(s) | 2819, 3165 |
| OliI | CACNNNNGTG | 4 cut(s) | 4828, 5407, 6049, 6132 |
| PaeI | GCATGC | 1 cut(s) | 685 |
| PaeR7I | CTCGAG | 2 cut(s) | 4223, 5444 |
| PagI | TCATGA | 2 cut(s) | 3130, 5467 |
| PaqCI | CACCTGC | 1 cut(s) | 2411 |
| PasI | CCCWGGG | 1 cut(s) | 3380 |
| PceI | AGGCCT | 1 cut(s) | 1891 |
| PciI | ACATGT | 2 cut(s) | 4706, 6129 |
| PciSI | GCTCTTC | 3 cut(s) | 1089, 1097, 2217 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 3352, 4773, 6203, 6257 |
| PctI | GAATGC | 5 cut(s) | 2078, 4011, 5438, 5612, 6080 |
| PdmI | GAANNNNTTC | 5 cut(s) | 522, 1083, 1527, 2815, 5325 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 692, 1126, 2168, 4559 |
| PfoI | TCCNGGA | 1 cut(s) | 5019 |
| PinAI | ACCGGT | 2 cut(s) | 3999, 4491 |
| PleI | GAGTC | 8 cut(s) | 312, 655, 1863, 3417, 3945, 4747, 5308, 5971 |
| PmaCI | CACGTG | 1 cut(s) | 5603 |
| PmeI | GTTTAAAC | 1 cut(s) | 6175 |
| PmlI | CACGTG | 1 cut(s) | 5603 |
| PpsI | GAGTC | 8 cut(s) | 312, 655, 1863, 3417, 3945, 4747, 5308, 5971 |
| Ppu21I | YACGTR | 1 cut(s) | 5603 |
| PpuMI | RGGWCCY | 2 cut(s) | 2713, 4563 |
| PscI | ACATGT | 2 cut(s) | 4706, 6129 |
| Psp124BI | GAGCTC | 3 cut(s) | 2901, 3737, 4349 |
| Psp5II | RGGWCCY | 2 cut(s) | 2713, 4563 |
| PspCI | CACGTG | 1 cut(s) | 5603 |
| PspN4I | GGNNCC | 6 cut(s) | 1204, 3882, 4281, 4564, 5146, 6255 |
| PspOMI | GGGCCC | 1 cut(s) | 6253 |
| PspPPI | RGGWCCY | 2 cut(s) | 2713, 4563 |
| PspXI | VCTCGAGB | 1 cut(s) | 4223 |
| PstI | CTGCAG | 1 cut(s) | 2854 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1622, 4480 |
| PsuI | RGATCY | 3 cut(s) | 2111, 2774, 4028 |
| SacI | GAGCTC | 3 cut(s) | 2901, 3737, 4349 |
| SalI | GTCGAC | 2 cut(s) | 2015, 3520 |
| SapI | GCTCTTC | 3 cut(s) | 1089, 1097, 2217 |
| ScaI | AGTACT | 3 cut(s) | 3574, 3718, 6336 |
| SchI | GAGTC | 8 cut(s) | 312, 656, 1864, 3418, 3945, 4748, 5309, 5972 |
| SduI | GDGCHC | 9 cut(s) | 312, 1668, 2901, 3737, 4349, 6129, 6192, 6257, 6312 |
| SfcI | CTRYAG | 5 cut(s) | 663, 945, 2217, 2804, 2850 |
| Sfr274I | CTCGAG | 2 cut(s) | 4223, 5444 |
| SfuI | TTCGAA | 2 cut(s) | 2819, 3165 |
| SinI | GGWCC | 6 cut(s) | 983, 2713, 2838, 3881, 4563, 5497 |
| SlaI | CTCGAG | 2 cut(s) | 4223, 5444 |
| SmlI | CTYRAG | 9 cut(s) | 167, 357, 1451, 1973, 2107, 2708, 3747, 4223, 5444 |
| SmoI | CTYRAG | 9 cut(s) | 167, 357, 1451, 1973, 2107, 2708, 3747, 4223, 5444 |
| SpeI | ACTAGT | 2 cut(s) | 2081, 4130 |
| SphI | GCATGC | 1 cut(s) | 685 |
| SseBI | AGGCCT | 1 cut(s) | 1891 |
| SsiI | CCGC | 9 cut(s) | 284, 298, 733, 2929, 2970, 3056, 3404, 5142, 6078 |
| SspI | AATATT | 8 cut(s) | 1347, 1460, 2340, 2402, 3214, 3457, 5724, 6117 |
| SstI | GAGCTC | 3 cut(s) | 2901, 3737, 4349 |
| StuI | AGGCCT | 1 cut(s) | 1891 |
| StyI | CCWWGG | 2 cut(s) | 47, 3181 |
| TaqII | GACCGA | 1 cut(s) | 5854 |
| TatI | WGTACW | 6 cut(s) | 3149, 3550, 3572, 3716, 3800, 6334 |
| TauI | GCSGC | 3 cut(s) | 2932, 3407, 5145 |
| TseFI | GTSAC | 5 cut(s) | 346, 2671, 3391, 4126, 5791 |
| Tsp45I | GTSAC | 5 cut(s) | 346, 2671, 3391, 4126, 5791 |
| TspGWI | ACGGA | 5 cut(s) | 1800, 3245, 4164, 4910, 5489 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 692, 1126, 2168, 4559 |
| VneI | GTGCAC | 3 cut(s) | 1664, 6125, 6188 |
| VpaK11BI | GGWCC | 6 cut(s) | 983, 2713, 2838, 3881, 4563, 5497 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 116 |
| XbaI | TCTAGA | 5 cut(s) | 271, 2647, 5116, 5755, 5959 |
| XceI | RCATGY | 6 cut(s) | 685, 1365, 1389, 4462, 4710, 6133 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1127 |
| XhoI | CTCGAG | 2 cut(s) | 4223, 5444 |
| XmiI | GTMKAC | 5 cut(s) | 846, 1161, 2016, 3521, 4077 |
| XmnI | GAANNNNTTC | 5 cut(s) | 522, 1083, 1527, 2815, 5325 |
| ZrmI | AGTACT | 3 cut(s) | 3574, 3718, 6336 |
| Zsp2I | ATGCAT | 3 cut(s) | 1387, 1497, 4071 |