Rroxscaffold_5G00371480

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001545
Physical Location & Seq
Forward (+)
53069398 .. 53070735
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371480.1

Sequence Viewer

Length: 990 bp
ATGTTCTTTCTTCAGGAGCTATTTTCTCAGGGTGGTTGTTTTCAATTTTTTTTTGGTGCTGAAACTGATATTGCTTCATGGTTCTGTCGTCAAAGTACTAATTCGTCAATAAAAATTCCATTACCTCAAGACTTGGATGGGAAAAGTGAATGGATTGGTTTTGCTTTGTGGTTTCTTATTGAATCGGAGGTGCATGACAGTGTGGATTCAGAAGAAGATCCTCAATCCGAATATTTCAATAAGAGAAATTACAGTTGTGACATCTTCACAAATGATGAAGATCCTACCCTAAAGTATCCACTCGCAGATCGCAATGGTCTTGAGACATATCAGCATTTGCTTTATATACCTGCAGATCATTTCGTGAAAAGGTTGAATAAATGCTTCATCGAGGCTAAAATCAACATCAAAAGAACGGGGGTGGAGGTGGTAGCATGTAGGGCGAGGCTATTGTACTCGGCAGACGTGCCAGAATTTGTCGGGACTCGGTTCACCTTTGGAATCATGAACAAGTGGAGACAAGCTATGTGTGGGTATGGGATACATACCAGCACGCTAGAATTTTCCGAACAAGTGGGGCATCCGGCAAATTCATCATCGAGCAAGTGCACTGATCAGTCAAAAGTTTATCCTTTTGCTTCAGAAACAAGTTTCTTGATTGAAATTGAACGCCAGATTTTCAGAAATTTAAGTTCAACCGGGATGGAAGGTCATGAAGTGAGAACAATGGTAGAGGCATTGCTGCTTGAAGAAATATTTGAGCTGGAATCCGCACGTAGCTATGATTATGGTTTCATTTTCTCTCTCAGAGCAATTTTACCGTGGTTTACTCATCAAAGCATCGGCAGTGTAGTCCTTTCACTAAACGACCAAAGCATTGGGGGAGTAGTAGGCATGTGTCTTCCACCACTTTTACATAGCGATAACGAATGGGTAGGGTTTTCCTATTTGTGGCCTTCACTCCGCCTCCTCCAGGTGTTTTGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

329

Amino Acids

37.74

Weight (kDa)

4.91

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AciI CCGC 2 cut(s) 771, 964
AclWI GGATC 2 cut(s) 212, 275
AcsI RAATTY 5 cut(s) 114, 473, 560, 589, 685
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 2 cut(s) 97, 455
AfiI CCNNNNNNNGG 2 cut(s) 951, 973
AgsI TTSAA 8 cut(s) 44, 182, 238, 376, 662, 668, 696, 749
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 1 cut(s) 972
AluBI AGCT 4 cut(s) 19, 524, 763, 780
AluI AGCT 4 cut(s) 19, 524, 763, 780
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 2 cut(s) 317, 511
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 2 cut(s) 212, 275
AoxI GGCC 1 cut(s) 953
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 1 cut(s) 742
ApoI RAATTY 5 cut(s) 114, 473, 560, 589, 685
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 893
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 729
BccI CCATC 2 cut(s) 131, 697
BciT130I CCWGG 1 cut(s) 974
BciVI GTATCC 2 cut(s) 306, 534
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 317, 511
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 358
BfuI GTATCC 2 cut(s) 306, 534
BisI GCNGC 1 cut(s) 743
BlsI GCNGC 1 cut(s) 744
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 700, 974
BmgBI CACGTC 1 cut(s) 466
BmrFI CCNGG 2 cut(s) 700, 974
BmsI GCATC 2 cut(s) 589, 849
BpiI GAAGAC 1 cut(s) 893
BpmI CTGGAG 1 cut(s) 956
BpuEI CTTGAG 2 cut(s) 111, 341
BpuMI CCSGG 1 cut(s) 700
BsaAI YACGTR 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 821
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 2 cut(s) 951, 973
Bse3DI GCAATG 2 cut(s) 319, 737
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 974
BseDI CCNNGG 1 cut(s) 821
BseGI GGATG 3 cut(s) 142, 580, 708
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 951, 973
BseMI GCAATG 2 cut(s) 319, 737
BseMII CTCAG 2 cut(s) 41, 820
BseRI GAGGAG 1 cut(s) 959
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 1 cut(s) 729
BshFI GGCC 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 2 cut(s) 584, 699
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 2 cut(s) 951, 973
BsmAI GTCTC 2 cut(s) 317, 511
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 1 cut(s) 955
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 5 cut(s) 217, 280, 307, 355, 613
BspACI CCGC 2 cut(s) 771, 964
BspANI GGCC 1 cut(s) 955
BspCNI CTCAG 2 cut(s) 40, 819
BspHI TCATGA 2 cut(s) 504, 712
BspMAI CTGCAG 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 2 cut(s) 212, 275
BsrDI GCAATG 2 cut(s) 319, 737
BssECI CCNNGG 1 cut(s) 821
BssMI GATC 5 cut(s) 217, 280, 307, 355, 613
Bst2UI CCWGG 1 cut(s) 974
Bst4CI ACNGT 3 cut(s) 200, 254, 822
BstBAI YACGTR 1 cut(s) 776
BstC8I GCNNGC 1 cut(s) 554
BstDEI CTNAG 2 cut(s) 27, 806
BstDSI CCRYGG 1 cut(s) 821
BstENI CCTNNNNNAGG 1 cut(s) 971
BstF5I GGATG 3 cut(s) 142, 580, 708
BstKTI GATC 5 cut(s) 220, 283, 310, 358, 616
BstMAI GTCTC 2 cut(s) 317, 511
BstMBI GATC 5 cut(s) 217, 280, 307, 355, 613
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 1 cut(s) 974
BstNSI RCATGY 2 cut(s) 438, 898
BstSCI CCNGG 2 cut(s) 698, 972
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 611
BstV1I GCAGC 1 cut(s) 729
BstV2I GAAGAC 1 cut(s) 893
BstX2I RGATCY 2 cut(s) 217, 280
BstXI CCANNNNNNTGG 1 cut(s) 878
BstYI RGATCY 2 cut(s) 217, 280
BsuI GTATCC 2 cut(s) 306, 534
BsuRI GGCC 1 cut(s) 955
BtgI CCRYGG 1 cut(s) 821
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 3 cut(s) 142, 580, 708
BtsI GCAGTG 1 cut(s) 853
BtsIMutI CAGTG 3 cut(s) 205, 609, 853
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 554
CciI TCATGA 2 cut(s) 504, 712
Csp6I GTAC 2 cut(s) 96, 454
CviAII CATG 6 cut(s) 78, 194, 435, 505, 713, 895
CviJI RGCY 8 cut(s) 19, 395, 448, 524, 763, 780, 955, 985
CviKI_1 RGCY 8 cut(s) 19, 395, 448, 524, 763, 780, 955, 985
CviQI GTAC 2 cut(s) 96, 454
DdeI CTNAG 2 cut(s) 27, 806
DpnI GATC 5 cut(s) 219, 282, 309, 357, 615
DpnII GATC 5 cut(s) 217, 280, 307, 355, 613
EciI GGCGGA 1 cut(s) 953
Eco57I CTGAAG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 971
EcoRII CCWGG 1 cut(s) 972
FaeI CATG 6 cut(s) 81, 197, 438, 508, 716, 898
FaqI GGGAC 1 cut(s) 496
FatI CATG 6 cut(s) 77, 193, 434, 504, 712, 894
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 1 cut(s) 743
FokI GGATG 3 cut(s) 149, 567, 715
Fsp4HI GCNGC 1 cut(s) 743
FspBI CTAG 1 cut(s) 557
GluI GCNGC 1 cut(s) 743
GsuI CTGGAG 1 cut(s) 956
HaeIII GGCC 1 cut(s) 955
HapII CCGG 2 cut(s) 584, 699
Hin1II CATG 6 cut(s) 81, 197, 438, 508, 716, 898
HinfI GANTC 5 cut(s) 182, 206, 484, 501, 767
HpaII CCGG 2 cut(s) 584, 699
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 3 cut(s) 492, 609, 828
Hpy188I TCNGA 7 cut(s) 187, 211, 229, 568, 643, 683, 809
Hpy188III TCNNGA 8 cut(s) 14, 128, 320, 364, 481, 505, 655, 713
Hpy8I GTNNAC 3 cut(s) 492, 609, 828
HpyAV CCTTC 2 cut(s) 701, 966
HpyCH4III ACNGT 3 cut(s) 200, 254, 822
HpyCH4IV ACGT 2 cut(s) 465, 775
HpyCH4V TGCA 3 cut(s) 193, 353, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 2 cut(s) 27, 806
HpySE526I ACGT 2 cut(s) 465, 775
Hsp92II CATG 6 cut(s) 81, 197, 438, 508, 716, 898
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 5 cut(s) 217, 280, 307, 355, 613
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 729
LweI GCATC 2 cut(s) 589, 849
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 465, 775
MaeIII GTNAC 1 cut(s) 257
MalI GATC 5 cut(s) 219, 282, 309, 357, 615
MboI GATC 5 cut(s) 217, 280, 307, 355, 613
MboII GAAGA 6 cut(s) 224, 227, 256, 290, 761, 893
MflI RGATCY 2 cut(s) 217, 280
MhlI GDGCHC 1 cut(s) 611
MlyI GAGTC 1 cut(s) 478
MnlI CCTC 9 cut(s) 135, 181, 231, 385, 418, 438, 727, 977, 980
MseI TTAA 1 cut(s) 689
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 2 cut(s) 584, 699
MspR9I CCNGG 2 cut(s) 700, 974
MvaI CCWGG 1 cut(s) 974
MwoI GCNNNNNNNGC 1 cut(s) 440
NciI CCSGG 1 cut(s) 700
NdeII GATC 5 cut(s) 217, 280, 307, 355, 613
NlaIII CATG 6 cut(s) 81, 197, 438, 508, 716, 898
NmeAIII GCCGAG 1 cut(s) 437
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 2 cut(s) 438, 898
PagI TCATGA 2 cut(s) 504, 712
PfeI GAWTC 4 cut(s) 182, 206, 501, 767
PkrI GCNGC 1 cut(s) 744
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
Ppu21I YACGTR 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 972
PspGI CCWGG 1 cut(s) 972
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 217, 280
RsaI GTAC 2 cut(s) 97, 455
RsaNI GTAC 2 cut(s) 96, 454
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 1 cut(s) 743
Sau3AI GATC 5 cut(s) 217, 280, 307, 355, 613
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 2 cut(s) 700, 974
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 2 cut(s) 589, 849
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 126, 320
SmoI CTYRAG 2 cut(s) 126, 320
SsiI CCGC 2 cut(s) 771, 964
SspI AATATT 2 cut(s) 233, 756
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 698, 972
TaaI ACNGT 3 cut(s) 200, 254, 822
TaiI ACGT 2 cut(s) 468, 778
TaqI TCGA 2 cut(s) 390, 599
TatI WGTACW 2 cut(s) 95, 453
TfiI GAWTC 4 cut(s) 182, 206, 501, 767
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 3 cut(s) 205, 616, 853
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 1 cut(s) 742
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 7 cut(s) 66, 291, 376, 521, 582, 729, 784
TspRI CASTG 3 cut(s) 205, 616, 853
VneI GTGCAC 1 cut(s) 607
XagI CCTNNNNNAGG 1 cut(s) 971
XapI RAATTY 5 cut(s) 114, 473, 560, 589, 685
XceI RCATGY 2 cut(s) 438, 898
XspI CTAG 1 cut(s) 557
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.