RchiOBHm_Chr4g0429711

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001545
Physical Location & Seq
Forward (+)
54454789 .. 54456475
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39848

Sequence Viewer

Length: 1185 bp
ATGCCACCAGATCTATCTAGAGATGCTAATTGGATAGGATTGGCATTCTGTGCATCCTTTGCAGCTCTGAAGAATTCAAGTGCCAACTTTGCCAATAATGTGGATCCAGGACTTCCTCACCACCTTACATGTCATTTGGAAAAGGATGATGGAGGTAGTCTGGAATCTCTCCATGACTATTGCACCACCAATGAAGAATTTCAATGGATGCATCTAGGAGGATTTATGTGGCTCTCCTATATACCACGAACATGGTTTTCAGATCAGCTGAATGAATGTGGTTGCCTGGAGGCTTCAATTGTAAGTGGTCATGGAGCATTTAATGTGGATAAGTGTGGGTTCCGGCTTGTATATCAGCAAGATGAAGAAGAGCTTAAGCAGACCTTAATGCTTTGCAAGACCGCTTTGTTGGATCTTTATGAGGAGAAGCAAGACCATGAGGCAGATGGAACTAGTAGAACACTGGCCGATAATCATGATGGAGAAACCAGTAGTGCAAATGGTATCAGGGATCAGGACTTTGACCGTGCCTTGACGTACAATTCTTGTTTCCCTCCAAGTGATATTGTAGAGTGGTTCGGGCATCATAGCAATGGCCCTTCGGTAAAAATCCCGCTACCATCAAATCTATACAAGGAGAATACTAATTGGGTAGGACTGGCTCTGTGCGCATACTTTTCAGTTCTTGACCCTTCGAATGCCAGCCTTGATCATTTGGATTCTGAAAAACTTGATCACCACCTTACATGTTATTTGGAAACTGATAGCGGTAGTACGGACTTTTTCCATTGCTACATCACCAAAAACAAAGAATTCAAATGGTTGCATCTAGGAGGATTCTTATGGGTATCCTACATACCACAAAGGTTATTGAGTTTGGGTCATCAGTCAAATGAGTGCATTAACCTGGAGGCTTCTATTGGAAGTGATCATCAAGGCTTGGGGGTGCTCAAGTGTGGGCTTCGTCTTCTATATCAACATGATGTGGAAGAGTTCAAGAAAACCATTATGCACTGCAAGACCTCCTTGTCTGAACATTACAATGGAGAAAATAAGCCTGATGTTGGGGGTGAGACCGAATCATCTAGTACTAGCAGCAAGTGTGTCATTGGGGGACCGCACAGTGGTATATTAGAAAGACCCCAAATTGATAAGGGTAAAGGAGTGCTGGTGTCTGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

394

Amino Acids

43.97

Weight (kDa)

5.09

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 185 - 330 6.2e-11 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1027
Acc16I TGCGCA 1 cut(s) 670
AciI CCGC 4 cut(s) 402, 614, 768, 1118
AclWI GGATC 4 cut(s) 98, 111, 420, 519
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 3 cut(s) 73, 197, 812
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 3 cut(s) 539, 775, 1090
AfiI CCNNNNNNNGG 2 cut(s) 1064, 1124
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 128, 746
AgsI TTSAA 5 cut(s) 78, 203, 297, 817, 997
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 3 cut(s) 106, 285, 906
AluBI AGCT 3 cut(s) 65, 268, 373
AluI AGCT 3 cut(s) 65, 268, 373
Alw21I GWGCWC 1 cut(s) 951
Alw26I GTCTC 1 cut(s) 1067
AlwI GGATC 4 cut(s) 98, 111, 420, 519
AoxI GGCC 2 cut(s) 465, 595
ApeKI GCWGC 2 cut(s) 62, 1095
ApoI RAATTY 3 cut(s) 73, 197, 812
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 2 cut(s) 596, 1115
AsuHPI GGTGA 4 cut(s) 110, 728, 790, 1082
AsuII TTCGAA 1 cut(s) 695
AvaII GGWCC 1 cut(s) 1115
BamHI GGATCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 1 cut(s) 951
BbvI GCAGC 2 cut(s) 74, 1107
BccI CCATC 4 cut(s) 143, 440, 473, 628
BciT130I CCWGG 3 cut(s) 108, 287, 908
BciVI GTATCC 1 cut(s) 859
BclI TGATCA 3 cut(s) 709, 733, 928
BcoDI GTCTC 1 cut(s) 1067
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 6 cut(s) 18, 215, 453, 830, 1086, 1092
BfrI CTTAAG 1 cut(s) 374
BfuI GTATCC 1 cut(s) 859
BglII AGATCT 1 cut(s) 10
BisI GCNGC 2 cut(s) 63, 1096
BlsI GCNGC 2 cut(s) 64, 1097
BmcAI AGTACT 1 cut(s) 1090
Bme1390I CCNGG 3 cut(s) 108, 287, 908
Bme18I GGWCC 1 cut(s) 1115
BmgT120I GGNCC 2 cut(s) 596, 1115
BmiI GGNNCC 3 cut(s) 105, 341, 1116
BmrFI CCNGG 3 cut(s) 108, 287, 908
BmsI GCATC 6 cut(s) 13, 62, 198, 220, 592, 835
BpiI GAAGAC 1 cut(s) 959
BpmI CTGGAG 2 cut(s) 308, 929
Bpu14I TTCGAA 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 935
BsaI GGTCTC 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 1155, 1185
Bsc4I CCNNNNNNNGG 2 cut(s) 1064, 1124
Bse1I ACTGG 3 cut(s) 468, 489, 663
Bse3DI GCAATG 2 cut(s) 598, 787
BseBI CCWGG 3 cut(s) 108, 287, 908
BseGI GGATG 3 cut(s) 53, 151, 213
BseLI CCNNNNNNNGG 2 cut(s) 1064, 1124
BseMI GCAATG 2 cut(s) 598, 787
BseNI ACTGG 3 cut(s) 468, 489, 663
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 74, 1107
BshFI GGCC 2 cut(s) 467, 597
BsiHKAI GWGCWC 1 cut(s) 951
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 1 cut(s) 1128
BslI CCNNNNNNNGG 2 cut(s) 1064, 1124
BsmAI GTCTC 1 cut(s) 1067
BsmFI GGGAC 1 cut(s) 1128
BsmI GAATGC 2 cut(s) 44, 703
BsnI GGCC 2 cut(s) 467, 597
Bso31I GGTCTC 1 cut(s) 1067
Bsp119I TTCGAA 1 cut(s) 695
Bsp1286I GDGCHC 1 cut(s) 951
Bsp143I GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
BspACI CCGC 4 cut(s) 402, 614, 768, 1118
BspANI GGCC 2 cut(s) 467, 597
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 3 cut(s) 105, 341, 1116
BspPI GGATC 4 cut(s) 98, 111, 420, 519
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 695
BspTI CTTAAG 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 1067
BsrDI GCAATG 2 cut(s) 598, 787
BsrI ACTGG 3 cut(s) 468, 489, 663
BssMI GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
Bst2UI CCWGG 3 cut(s) 108, 287, 908
Bst4CI ACNGT 2 cut(s) 527, 1124
Bst6I CTCTTC 2 cut(s) 363, 984
BstAFI CTTAAG 1 cut(s) 374
BstAPI GCANNNNNTGC 2 cut(s) 50, 59
BstBI TTCGAA 1 cut(s) 695
BstC8I GCNNGC 1 cut(s) 703
BstF5I GGATG 3 cut(s) 53, 151, 213
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 8 cut(s) 13, 106, 265, 415, 514, 712, 736, 931
BstMAI GTCTC 1 cut(s) 1067
BstMBI GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
BstMWI GCNNNNNNNGC 4 cut(s) 50, 59, 89, 668
BstNI CCWGG 3 cut(s) 108, 287, 908
BstNSI RCATGY 2 cut(s) 132, 750
BstSCI CCNGG 3 cut(s) 106, 285, 906
BstV1I GCAGC 2 cut(s) 74, 1107
BstV2I GAAGAC 1 cut(s) 959
BstX2I RGATCY 3 cut(s) 10, 103, 412
BstXI CCANNNNNNTGG 2 cut(s) 100, 252
BstYI RGATCY 3 cut(s) 10, 103, 412
BsuI GTATCC 1 cut(s) 859
BsuRI GGCC 2 cut(s) 467, 597
BtsCI GGATG 3 cut(s) 53, 151, 213
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 3 cut(s) 461, 1012, 1129
Cac8I GCNNGC 1 cut(s) 703
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 671
Cfr13I GGNCC 2 cut(s) 596, 1115
Csp6I GTAC 3 cut(s) 538, 774, 1089
CviAII CATG 8 cut(s) 129, 173, 252, 311, 437, 476, 747, 980
CviQI GTAC 3 cut(s) 538, 774, 1089
DpnI GATC 8 cut(s) 12, 105, 264, 414, 513, 711, 735, 930
DpnII GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
DrdI GACNNNNNNGTC 1 cut(s) 1027
DseDI GACNNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 363, 984
EarI CTCTTC 2 cut(s) 363, 984
Eco31I GGTCTC 1 cut(s) 1067
Eco47I GGWCC 1 cut(s) 1115
Eco57I CTGAAG 1 cut(s) 89
EcoRI GAATTC 2 cut(s) 73, 812
EcoRII CCWGG 3 cut(s) 106, 285, 906
EcoT22I ATGCAT 1 cut(s) 213
FaeI CATG 8 cut(s) 132, 176, 255, 314, 440, 479, 750, 983
FalI AAGNNNNNCTT 6 cut(s) 357, 389, 368, 400, 1010, 1042
FaqI GGGAC 1 cut(s) 1128
FatI CATG 8 cut(s) 128, 172, 251, 310, 436, 475, 746, 979
FauI CCCGC 1 cut(s) 621
FbaI TGATCA 3 cut(s) 709, 733, 928
Fnu4HI GCNGC 2 cut(s) 63, 1096
FokI GGATG 3 cut(s) 40, 158, 220
Fsp4HI GCNGC 2 cut(s) 63, 1096
FspAI RTGCGCAY 1 cut(s) 670
FspBI CTAG 6 cut(s) 18, 215, 453, 830, 1086, 1092
FspI TGCGCA 1 cut(s) 670
GlaI GCGC 1 cut(s) 670
GluI GCNGC 2 cut(s) 63, 1096
GsuI CTGGAG 2 cut(s) 308, 929
HaeIII GGCC 2 cut(s) 467, 597
HapII CCGG 1 cut(s) 343
HhaI GCGC 1 cut(s) 671
Hin1II CATG 8 cut(s) 132, 176, 255, 314, 440, 479, 750, 983
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HinfI GANTC 4 cut(s) 164, 719, 837, 1079
HpaII CCGG 1 cut(s) 343
HphI GGTGA 4 cut(s) 110, 728, 790, 1082
Hpy188I TCNGA 4 cut(s) 69, 262, 724, 1033
Hpy188III TCNNGA 6 cut(s) 18, 161, 476, 515, 686, 997
HpyAV CCTTC 2 cut(s) 609, 702
HpyCH4III ACNGT 2 cut(s) 527, 1124
HpyCH4IV ACGT 1 cut(s) 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 59, 89, 668
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 8 cut(s) 132, 176, 255, 314, 440, 479, 750, 983
HspAI GCGC 1 cut(s) 669
Ksp22I TGATCA 3 cut(s) 709, 733, 928
Kzo9I GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 2 cut(s) 74, 1107
LweI GCATC 6 cut(s) 13, 62, 198, 220, 592, 835
MaeI CTAG 6 cut(s) 18, 215, 453, 830, 1086, 1092
MaeII ACGT 1 cut(s) 536
MalI GATC 8 cut(s) 12, 105, 264, 414, 513, 711, 735, 930
MboI GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
MboII GAAGA 6 cut(s) 82, 206, 377, 380, 959, 1001
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 3 cut(s) 10, 103, 412
MhlI GDGCHC 1 cut(s) 951
MluCI AATT 8 cut(s) 28, 73, 197, 297, 541, 646, 812, 1146
MmeI TCCRAC 1 cut(s) 390
Mph1103I ATGCAT 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 4 cut(s) 321, 375, 386, 903
MslI CAYNNNNRTG 3 cut(s) 250, 591, 1041
MspA1I CMGCKG 1 cut(s) 268
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 3 cut(s) 108, 287, 908
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 2 cut(s) 44, 703
MvaI CCWGG 3 cut(s) 108, 287, 908
MwoI GCNNNNNNNGC 4 cut(s) 50, 59, 89, 668
NdeII GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
NlaIII CATG 8 cut(s) 132, 176, 255, 314, 440, 479, 750, 983
NlaIV GGNNCC 3 cut(s) 105, 341, 1116
NsbI TGCGCA 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 213
NspI RCATGY 2 cut(s) 132, 750
NspV TTCGAA 1 cut(s) 695
PagI TCATGA 1 cut(s) 475
PciI ACATGT 2 cut(s) 128, 746
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 2 cut(s) 44, 703
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 4 cut(s) 164, 719, 837, 1079
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 2 cut(s) 64, 1097
PscI ACATGT 2 cut(s) 128, 746
Psp6I CCWGG 3 cut(s) 106, 285, 906
PspGI CCWGG 3 cut(s) 106, 285, 906
PspN4I GGNNCC 3 cut(s) 105, 341, 1116
PspPI GGNCC 2 cut(s) 596, 1115
PsuI RGATCY 3 cut(s) 10, 103, 412
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 3 cut(s) 539, 775, 1090
RsaNI GTAC 3 cut(s) 538, 774, 1089
RseI CAYNNNNRTG 3 cut(s) 250, 591, 1041
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 4 cut(s) 321, 375, 386, 903
SatI GCNGC 2 cut(s) 63, 1096
Sau3AI GATC 8 cut(s) 10, 103, 262, 412, 511, 709, 733, 928
Sau96I GGNCC 2 cut(s) 596, 1115
ScaI AGTACT 1 cut(s) 1090
ScrFI CCNGG 3 cut(s) 108, 287, 908
SduI GDGCHC 1 cut(s) 951
SfaNI GCATC 6 cut(s) 13, 62, 198, 220, 592, 835
SfuI TTCGAA 1 cut(s) 695
SinI GGWCC 1 cut(s) 1115
SmiMI CAYNNNNRTG 3 cut(s) 250, 591, 1041
SmlI CTYRAG 2 cut(s) 374, 950
SmoI CTYRAG 2 cut(s) 374, 950
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 8 cut(s) 28, 73, 197, 297, 541, 646, 812, 1146
SsiI CCGC 4 cut(s) 402, 614, 768, 1118
SspMI CTAG 6 cut(s) 18, 215, 453, 830, 1086, 1092
StyD4I CCNGG 3 cut(s) 106, 285, 906
TaaI ACNGT 2 cut(s) 527, 1124
TaiI ACGT 1 cut(s) 539
TaqI TCGA 1 cut(s) 695
TaqII GACCGA 1 cut(s) 1091
TasI AATT 8 cut(s) 28, 73, 197, 297, 541, 646, 812, 1146
TatI WGTACW 1 cut(s) 1088
TfiI GAWTC 4 cut(s) 164, 719, 837, 1079
Tru1I TTAA 4 cut(s) 321, 375, 386, 903
Tru9I TTAA 4 cut(s) 321, 375, 386, 903
TscAI CASTG 3 cut(s) 468, 1019, 1129
TseI GCWGC 2 cut(s) 62, 1095
TspDTI ATGAA 3 cut(s) 207, 288, 378
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 3 cut(s) 468, 1019, 1129
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 1115
XapI RAATTY 3 cut(s) 73, 197, 812
XbaI TCTAGA 1 cut(s) 17
XceI RCATGY 2 cut(s) 132, 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 6 cut(s) 18, 215, 453, 830, 1086, 1092
ZrmI AGTACT 1 cut(s) 1090
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.