Rh4CG315500

resistance protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
57795037 .. 57804947
9911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG315500.1

Sequence Viewer

Length: 5958 bp
ATGCATCGTGTGAGGGAAATTGAATCAGACCTAGGTGTAGGCAAGTTGGATGAACTTCGTGTTATTGGCATTTGTGGTATGCCTGGAATTGGTAAGACAACCATTGCACGAGTTGTTTTTGAAAATATTCACAAGAAATTTGAAGCTAGCAGTTTCATTGCTAATGTTGGAGAGGACTATGAAAAGAAAGGTTTGTTCCATCTTCAGAAACAACTTTTTGATGACTTGTTGAAGACCAAAGTAACCACGGCGATTGTCAATAATGTGAGGCAGAGATTGCGTAACAAGAGGGTGCTTATCATTCTTGATGACGTAAAGGAGTTGGAACATATAGTGGACCTAGTTGGAAAGGGCTCTAGTGAAGAGTTCGGTGCAGGTAGTAGAATCATCATAACCACAAGAGATGAAAAGTTGTTGGAGAATTATGGGTCCAAAATACACAAGGTTGAAAAGCTTACTGAAAGTGAGTCTCTTCTCCTCTTCTGTCAGAAAGCCTTTAAGAAAGACCATCCTGTTGATGATTTTCTTGAGTTGTCTTACAGTTTTACAGATTACGCTAATGGCCTTCCTCTGGCTCTTGTAGTTTTGGGTTCATACCTATACCGAAGAAATGCGAAAGACTGGTCTGTTGAAAAGAAAAGATGGTCTGATGAACTGAAAAAATTAAGAGATAGCAACTTTTCTGGTCCAGAAAAAATATTCAATATTTTAAAACTAGGTTTTTTTGGATTAGACATGGCAGCAAAGGAGATATTTTTGGACATTGCTTGTTTCTTCAAAGGAGAGAATGAAACTGATGTAAGAAGGATATTTGAAAGTTGTGGCTTCTATCCAGAGTGTTGTATACCAAGCCTTCTTGAGAAATCCCTGATAACTATTGTAGGAGGAAAATTGTGGATGCACGAGTTACTACAACAAACTGGCCAGCAAATAGTCCGTGAAGAATCCAAATGGTTAGGGGAACGCAGCAGGCTGTGGGATCATACAGATATTGTTCCTGTCCTTCAGAACAATAAGGGGACAGAACTTGTTAAAGGTATTTTCCTTAGCTCACCTCAACAAGCCAGAGTGCACTTGAAGGCAGACCCTTTCTCAGAGATGCGCAACTTAAGACTGCTGAAGATTAAGAATGTGATATTGTCTGGATGCCTTGAGTTCACTCTTTCGGATCTGTTAAGCTTCTTCGAATGGCATGGATATCCTTTAAAATTTCTGCCCTCAAGTTTTAGACCGGATAAACTTGTTGAATTGCACTTGCCTCAAAGCCAAATAGAGCGACTATGGGAGGAAAATATCAAGCAGCCTCTGGAAATGTTGGTAATTGTAGACCTTAGTGACTGTGAATTCTTGACCAAGACCCTTGACTTCAGTCAAGTCCCGAAGCTGGAGAGGCTAATCCTTAAAGGTTGTAAAAGATTGTCTGATATTCACCCATCAATTGGAGATCTCAAAGGGCTCATTTCCTTGAATCTACAGGATTGTGAATCTCTTACCACTCTTCCCCCCAATATCAAGTTGGGATCTCTCATGACTTTCATACTTTCAGGATGTTCCAAACTGAAAAGGTTTCCGGAAATTGGAGAAAACATGAAAAACTTACTGGAACTTCATTTAGATGGGACAGCTATAGTAGAGCTACCAACATCAATTAAGCATTTGACTAGCCTCTCTCTGCTCAATTTAAAAGACTGCAAGCTCTTTCAGAGTCTTCCGGACGTAATTTGTACGTCTACATCACTCCAAACTCTCATCCTTCAAGGCTGCTCAAATTTATGCCAGTTGCCAGAAAACTTGGGGAGCTTAGAGTGTTTGAAGGTGCTTGACATAAGCAGAAGTGCTATAAGGCAGGTACCTTCCTCCATTCAATTTCTGAAAAATCTTACAGGACTATCTTGCGCCGGATGTCGAGATTTGCCTGCTGAACGCAGTTCATGGTGTTTGCCGACCTTCATTTCTTGCTTCTTGCCACCAGATTTAGCATCCAAAAATTCCAGTGGTTTGCAGTTGCCTGCTTCATTGTCCGGTTTATGCTCCTTAAGAAAATTAATTTTAAGCGATTGCAATCTGCTTGAAGGAGCAATCCCTGATGACATTGGCTGCATATCCTCGTTGAAGTATCTGGATTTAAGTGGAAACAACTTTGAGACATTACCCCAAAGCATCTCTCAACTTTATCAGCTTGAAGACCTTCGGTTAAATGATTGTAGAAACCTAAAATCATTGCCAACATCACTTCCTATAAGTATACGAGGTATATTTTCAGATAATTGTCCTCTCCTGGATGAAACATTTCAAGAAATAGTATGGACTTCAACTGCTTTGGGATTTAGCTTTATAAATTGCAAATACAACAAATTTTATCCCCTTCCGACAGCGGATCAGCACCTTAACCAGCAAAATATCCGAAGATTTTTAATGGAGCTATTTTCTCAGGGTGGTTGTTTTCAATTTTTTTTTGGGGCTGAAACTGATATTGCTTCATGGTTCTGTCGTCAAAGTACTAATTCGTCAATAAAAATTCCATTACCTCAAGACTTGGATGGGAAAAGTCAATGGATTGGTTTTGCTCTGTGGTTTCTTATTGAATCGGAGGTGCATGACAGTGTGGATTCAGAAGAAGATCCTCAATCCGAATATTTCAACAAGAGAAATTACAGTTGTGACATCTTCACAAATGATGAAGATCCTCCCCTAAAGTATCCACTCGCGGATTGCGATGGTCGTGAGACATATCAGCATTTGCTTTATATACCAGCAGATCATTTCGTGAAAAGGTTGAACAAATGCTTCATCGAGGCTAAAATCAACATCAAAAGAACAGGGGTGGAAGTGGTAGCATGTAGAGCGAGGCTATTGTACTCGGCAGATGTGCCAGAATTTGTCGGGACTCTGGTTCACCTTTGGAATCATGAACAAGTGGGGCATCTGGCAAATCCATCATCGAGCAAGTGCACTGATCAGTCAAAAGTTTATCCTTTTGCTTCAGAAACAAGTTTCTTGATTGAAATTGAACGCCAGATTTTCAGAAATTTAAGTTCAACCAGGATGGAAGGCCATGAAGTGAGAACAAGGGTAGAGGCATTGCTGCTTGAAGAAATATTTGAGCTGGAATCCGCACGTAGCTATGATTATGGTTTCATTTTCTCTCTCAGAGCAATTTTACCGTGGTTTACTCATCAAAGCATCGGCAGTGTAGTCCTTTCACTAAACGACCAAAGCATTGGGGGAGTAGTAGGCATGTGTCTTCCACCACTTTTACATAGCGATAACGAATGGGTAGGGTTTTCCCTATTTGTGGCCTTCACTCTGCCTCCTCCAGGTGTTTTGGCTGTAAAGTATTCTTCCGTTAACTGTCATTTGCTTACCTCCAGAGGAATAATGGGTCCGCAGCATAACCTAACATTAGAGTTCCCCGGTGAAGACAACTTTATGGGGTCAGAGCGAGTTCTTGTTATTCATATACCTCGAAAACATTTTCCAGAAGACCTCGGTGATCGCATTCAAGCTTCTTTTGAATCCCTCACTCCAGGTGTGGAGGTTCAAATGTCTGGGATGCGTCTAGTATACCGGCAAGATTTGAATGGCTTAATGCAAACTATTACTCACTGCACTCTACGCAGTCCATTTGCTTACTTCGGACAAGATGACAAAACATTTATGTTGGAAGAAAATAAGATTGGCGTACATTTGACCATGGAGAAAAGTTTGCTTCAACAAGCAAAAGACAGGATGCTTCAAGATTGGCAAAATTCTTCAACAGGTTCAAGGGTAATCACTGATCAACAAATTGAGTTGATGATACTTTCTGAAACTCCAGTCAATCCACCTAAGAAAAAACATTCAGTAATCAAGTGGAAAAGAAACCTTGAGCTTTTGCTTCAATTTTTCTTTAGGCTTCCTGTTGAACTATCGGTCACTGTATTTCTCAGTCGAAACATAATCTCTTGCTCAAAACGCTATTCTGGTATTTTCTATCAAAAGGAAATTCCGGAGTGGTTCACAGAACAACAATCATCTGACACTCTGGTGTCCCCAGTACCTACAAATCTTGGAAAGGATGAGAGTTTCCTGGGATTTGTTGTGTGCGCGGTTTTTTCAGTTGAGCCGTCTCGAGCTGACGTCCTCAAATATTTGTATTCAGGACACCATCCCAGACTTGCTTGCAATTTTCATTTGAGCCCTGAAATACCGTGTAGCTTAGAGGTTGGCAACTTGCCCGGGACCAGTCCCAAGAACAAATTCATGTGGTTATATCTTAGACGGTTTGTCTGGCTGCAGTACATACCGGGTCATTATTTTAAGGATCACTTGAATGAACTCCCTGAGTTAGGGGTTTCATTTACGAGTGATTCCCCAGCCTTGGCTGTAAAGCAGTGCGGATTCCGCATCCTATATGACCAAGAGGTGCGAGAATACTGGAAAGCAATAGTGCAGTTCTTCACTTCCTTTTTTGACGACAATGAGGATCATATTCGCCAATTCATTGAAGATGAGAGACATTCTTTTAGCATTACAAGATCTTTTGGGGGTTCTCAACAACAGGACTTTGATCGCTCTTTTGAGAACCATCTCCGAAGCAACATGCTTAAACAAATAGTCACAAACTTTTTGAAGGGTTTTCAACAACAGGACTTTGATCCCTCCGCGAACATACTATTGTATAAGAATCAGCTCCAGGACTTTGACCGATGCTCAATCTATAATTCTTGTTTCCCTCCAAACGAGATTGCAGAATGGTTCGAGCTTCAAAGAAATGGACCCTCGATAACAATCCTGCTGCCACCAGATCTATCTAGAGATGCTAATTGGATAGGATTGGCATTCTGTGCATCCTTTGCAGCTCTGAAGAATTCAATTGCCAACTTTGCCAATAATGTGGATCCAGGACTTCCTCACCACCTTACATGTCACTTGGAAAAGGATGATGGAGGTAGTCTGGAATCTCTCCATGACTATTGCACCACCAATGAAGAATTTCAATGGATGCATCTAGGAGGATTTATGTGGCTCTCCTATATACCGCGAACATGGTTTTCAGATCAGCTGAATGAATGTGGTTGCCTGGAGGCTTCAATTGTAAGTGGTCATGGAGCATTTAATGTGGATAAGTGTGGGTTCCGGCTGGTATATCAGCAAGATGAAGAAGAGCTTAAGCAGACCTTAATGCTTTGCAAGACCGCTTTGTTGGATCTTTATGAGGAGAAGCAAGGCCATGAGGCAGATGGAACTAGTAGAACATTGGCCGATAATCATGATGGAGAAACCAGTAGTGCAAATGGTATCAGGAATCAGGACTTTGACTGTGCCTTGACGTACAATTCTTGCTTCCCTCCAAGTGATATTGTAGAGTGGTTCGGGCATCATAGCAATGGCCCTTCAGTAAAAATCCCGCTACCATCAAATCTATACAAGGAGAATACTAATTGGGTAGGACTGGCTCTGTGCGCATACTTTTCAGTTCTTGACCCTTCGAATGCCAGCCTTGATCATTTGGATTCTGAAAAACTTGATCACCACCTTACATGTTATTTGGAAACTGATAGCGGTAGTACGGACTTTTTCCATTGCTACATCACCAAAAACAAAGAATTCAAATGGTTGCATCTAGGAGGATTCTTATGGGTATCCTACATACCACAAAGGTTATTGAGTTTGGGTCATCAGTCAAATGAGTGCATTAACCTGGAGGCTTCTATTGGAAGTGATCATCAAGGCTTGGGGGTGCTCAAGTGTGGGCTTCGTCTTCTCTATGAACATGATGCGGAGGAGTTCAAGAAAACCATTATGCACTGCAAGACCTTGTCTGAACATTACAATGGAGAAAATAAGCCTGACGTTGGGGGTGAGACCGAATCATCTAGTACTAGCAGCAAGTGTGTCATTGGGGGACCGCACAGTGGTATATTAGAAAGACCCCAAATTGATAAGGGTAAAGGAGTGCTGGTGTCTGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1985

Amino Acids

225.38

Weight (kDa)

5.63

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 17 - 169 7.9e-23 NB-ARC domain
NACHT PF05729 20 - 145 1e-05 NACHT domain
WHD_ROQ1 PF23282 248 - 316 4.1e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 507 - 591 1.8e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 590 - 640 1e-06 Leucine-rich repeat region
LRR_14 PF23598 671 - 744 5.7e-08 Leucine-rich repeat region
C-JID PF20160 1326 - 1469 1.8e-07 C-JID domain
C-JID PF20160 1571 - 1715 1.4e-08 C-JID domain
C-JID PF20160 1777 - 1922 1.4e-09 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2336
AatII GACGTC 1 cut(s) 4122
Acc16I TGCGCA 2 cut(s) 1103, 5446
Acc36I ACCTGC 2 cut(s) 365, 1837
Acc65I GGTACC 1 cut(s) 1849
AccB1I GGYRCC 1 cut(s) 1849
AccB7I CCANNNNNTGG 1 cut(s) 1439
AccI GTMKAC 5 cut(s) 844, 1326, 1730, 2245, 3564
AccII CGCG 4 cut(s) 2708, 4088, 4646, 5023
AccIII TCCGGA 3 cut(s) 1570, 1711, 3988
AcoI YGGCCR 2 cut(s) 922, 5241
AcuI CTGAAG 7 cut(s) 188, 989, 1139, 1351, 2967, 4865, 5361
AcyI GRCGYC 1 cut(s) 4119
AflII CTTAAG 3 cut(s) 1108, 2035, 5150
AflIII ACRYGT 2 cut(s) 4904, 5522
AhdI GACNNNNNGTC 1 cut(s) 4265
AhlI ACTAGT 1 cut(s) 5228
AjuI GAANNNNNNNTTGG 4 cut(s) 3660, 3692, 4223, 4255
AleI CACNNNNGTG 1 cut(s) 4025
Alw21I GWGCWC 3 cut(s) 1074, 2954, 5727
Alw26I GTCTC 6 cut(s) 474, 2138, 2720, 4113, 4489, 5840
Alw44I GTGCAC 2 cut(s) 1070, 2950
AlwNI CAGNNNCTG 1 cut(s) 1306
Ama87I CYCGRG 2 cut(s) 4110, 4217
Aor13HI TCCGGA 3 cut(s) 1570, 1711, 3988
AoxI GGCC 7 cut(s) 562, 922, 3052, 3297, 5209, 5241, 5371
ApaLI GTGCAC 2 cut(s) 1070, 2950
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AseI ATTAAT 1 cut(s) 2045
Asp700I GAANNNNTTC 5 cut(s) 126, 2187, 2289, 4238, 4974
Asp718I GGTACC 1 cut(s) 1849
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 4 cut(s) 1104, 1898, 4088, 5447
AspS9I GGNCC 8 cut(s) 337, 429, 686, 3383, 4221, 4757, 5372, 5888
AsuC2I CCSGG 4 cut(s) 3414, 4218, 4219, 4287
AsuHPI GGTGA 9 cut(s) 1044, 1421, 2888, 3428, 3503, 4886, 5504, 5566, 5855
AsuII TTCGAA 2 cut(s) 1185, 5471
AsuNHI GCTAGC 1 cut(s) 146
AvaI CYCGRG 2 cut(s) 4110, 4217
AvaII GGWCC 7 cut(s) 337, 429, 686, 3383, 4221, 4757, 5888
AvrII CCTAGG 1 cut(s) 31
BaeGI GKGCMC 2 cut(s) 1074, 2954
BalI TGGCCA 1 cut(s) 924
BamHI GGATCC 1 cut(s) 4879
BanI GGYRCC 1 cut(s) 1849
BanII GRGCYC 3 cut(s) 356, 1458, 4181
BauI CACGAG 2 cut(s) 108, 902
BbsI GAAGAC 7 cut(s) 239, 1700, 2190, 3236, 3426, 3489, 5735
Bbv12I GWGCWC 3 cut(s) 1074, 2954, 5727
BceAI ACGGC 2 cut(s) 264, 4090
BciVI GTATCC 2 cut(s) 2709, 5635
BclI TGATCA 5 cut(s) 2956, 3778, 5485, 5509, 5704
BcnI CCSGG 4 cut(s) 3414, 4218, 4219, 4287
BcoDI GTCTC 6 cut(s) 474, 2138, 2720, 4113, 4489, 5840
BcuI ACTAGT 1 cut(s) 5228
BfmI CTRYAG 3 cut(s) 1472, 1626, 4274
BfrI CTTAAG 3 cut(s) 1108, 2035, 5150
BfuAI ACCTGC 2 cut(s) 365, 1837
BfuI GTATCC 2 cut(s) 2709, 5635
BglII AGATCT 3 cut(s) 1444, 4517, 4786
BlnI CCTAGG 1 cut(s) 31
BmcAI AGTACT 2 cut(s) 2500, 5863
Bme18I GGWCC 7 cut(s) 337, 429, 686, 3383, 4221, 4757, 5888
BmeRI GACNNNNNGTC 1 cut(s) 4265
BmeT110I CYCGRG 2 cut(s) 4110, 4217
BmgT120I GGNCC 8 cut(s) 337, 429, 686, 3383, 4221, 4757, 5372, 5888
BmiI GGNNCC 8 cut(s) 430, 1851, 3384, 4222, 4759, 4881, 5117, 5889
BmrI ACTGGG 1 cut(s) 4028
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 4028
BoxI GACNNNNGTC 1 cut(s) 1368
BpiI GAAGAC 7 cut(s) 239, 1700, 2190, 3236, 3426, 3489, 5735
BpmI CTGGAG 8 cut(s) 1406, 3300, 3352, 3510, 3798, 4658, 5084, 5705
Bpu10I CCTNAGC 1 cut(s) 1046
Bpu14I TTCGAA 2 cut(s) 1185, 5471
BpuEI CTTGAG 7 cut(s) 548, 878, 1172, 1204, 2514, 3887, 5711
BpuMI CCSGG 4 cut(s) 3414, 4218, 4219, 4287
BsaAI YACGTR 1 cut(s) 3119
BsaBI GATNNNNATC 3 cut(s) 2061, 2682, 4769
BsaHI GRCGYC 1 cut(s) 4119
BsaI GGTCTC 1 cut(s) 5840
BsaJI CCNNGG 9 cut(s) 31, 246, 3164, 3412, 3487, 3693, 4069, 4217, 4359
BsaWI WCCGGW 5 cut(s) 1231, 1570, 1711, 2021, 3988
BsaXI ACNNNNNCTCC 4 cut(s) 3295, 3325, 5928, 5958
Bse118I RCCGGY 1 cut(s) 3567
Bse3DI GCAATG 7 cut(s) 102, 156, 762, 2219, 3080, 5374, 5563
Bse8I GATNNNNATC 3 cut(s) 2061, 2682, 4769
BseAI TCCGGA 3 cut(s) 1570, 1711, 3988
BseDI CCNNGG 9 cut(s) 31, 246, 3164, 3412, 3487, 3693, 4069, 4217, 4359
BseJI GATNNNNATC 3 cut(s) 2061, 2682, 4769
BseMI GCAATG 7 cut(s) 102, 156, 762, 2219, 3080, 5374, 5563
BseMII CTCAG 5 cut(s) 1107, 2444, 3163, 3940, 4314
BseRI GAGGAG 4 cut(s) 467, 3303, 5213, 5780
BseSI GKGCMC 2 cut(s) 1074, 2954
BseYI CCCAGC 1 cut(s) 4354
BsgI GTGCAG 3 cut(s) 393, 3592, 4451
Bsh1236I CGCG 4 cut(s) 2708, 4088, 4646, 5023
BshFI GGCC 7 cut(s) 564, 924, 3054, 3299, 5211, 5243, 5373
BshNI GGYRCC 1 cut(s) 1849
BsiHKAI GWGCWC 3 cut(s) 1074, 2954, 5727
BsiHKCI CYCGRG 2 cut(s) 4110, 4217
BslFI GGGAC 8 cut(s) 1033, 1361, 1633, 2899, 4015, 4212, 4234, 5901
BsmAI GTCTC 6 cut(s) 474, 2138, 2720, 4113, 4489, 5840
BsmBI CGTCTC 1 cut(s) 4113
BsmFI GGGAC 8 cut(s) 1033, 1361, 1633, 2899, 4015, 4212, 4234, 5901
BsmI GAATGC 3 cut(s) 3498, 4820, 5479
BsnI GGCC 7 cut(s) 564, 924, 3054, 3299, 5211, 5243, 5373
Bso31I GGTCTC 1 cut(s) 5840
BsoBI CYCGRG 2 cut(s) 4110, 4217
Bsp119I TTCGAA 2 cut(s) 1185, 5471
Bsp1286I GDGCHC 6 cut(s) 356, 1074, 1458, 2954, 4181, 5727
Bsp13I TCCGGA 3 cut(s) 1570, 1711, 3988
Bsp19I CCATGG 1 cut(s) 3693
BspANI GGCC 7 cut(s) 564, 924, 3054, 3299, 5211, 5243, 5373
BspCNI CTCAG 5 cut(s) 1106, 2443, 3162, 3939, 4315
BspEI TCCGGA 3 cut(s) 1570, 1711, 3988
BspFNI CGCG 4 cut(s) 2708, 4088, 4646, 5023
BspHI TCATGA 3 cut(s) 1527, 2908, 5251
BspLI GGNNCC 8 cut(s) 430, 1851, 3384, 4222, 4759, 4881, 5117, 5889
BspMAI CTGCAG 1 cut(s) 4278
BspMI ACCTGC 2 cut(s) 365, 1837
BspOI GCTAGC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 5139
BspT104I TTCGAA 2 cut(s) 1185, 5471
BspT107I GGYRCC 1 cut(s) 1849
BspTI CTTAAG 3 cut(s) 1108, 2035, 5150
BspTNI GGTCTC 1 cut(s) 5840
BsrDI GCAATG 7 cut(s) 102, 156, 762, 2219, 3080, 5374, 5563
BsrFI RCCGGY 1 cut(s) 3567
BssAI RCCGGY 1 cut(s) 3567
BssECI CCNNGG 9 cut(s) 31, 246, 3164, 3412, 3487, 3693, 4069, 4217, 4359
BssNAI GTATAC 3 cut(s) 845, 2246, 3565
BssNI GRCGYC 1 cut(s) 4119
BssSI CACGAG 2 cut(s) 108, 902
BssT1I CCWWGG 3 cut(s) 31, 3693, 4359
Bst1107I GTATAC 3 cut(s) 845, 2246, 3565
Bst2BI CACGAG 2 cut(s) 108, 902
Bst6I CTCTTC 5 cut(s) 357, 477, 485, 1503, 5139
BstACI GRCGYC 1 cut(s) 4119
BstAFI CTTAAG 3 cut(s) 1108, 2035, 5150
BstAPI GCANNNNNTGC 3 cut(s) 277, 4826, 4835
BstBAI YACGTR 1 cut(s) 3119
BstBI TTCGAA 2 cut(s) 1185, 5471
BstC8I GCNNGC 8 cut(s) 148, 926, 971, 1694, 1917, 2010, 4162, 5479
BstDSI CCRYGG 3 cut(s) 246, 3164, 3693
BstENI CCTNNNNNAGG 2 cut(s) 3315, 4326
BstFNI CGCG 4 cut(s) 2708, 4088, 4646, 5023
BstHHI GCGC 4 cut(s) 1104, 1898, 4088, 5447
BstMAI GTCTC 6 cut(s) 474, 2138, 2720, 4113, 4489, 5840
BstNSI RCATGY 5 cut(s) 2841, 3241, 4585, 4908, 5526
BstPAI GACNNNNGTC 1 cut(s) 1368
BstSFI CTRYAG 3 cut(s) 1472, 1626, 4274
BstSLI GKGCMC 2 cut(s) 1074, 2954
BstUI CGCG 4 cut(s) 2708, 4088, 4646, 5023
BstV2I GAAGAC 7 cut(s) 239, 1700, 2190, 3236, 3426, 3489, 5735
BstX2I RGATCY 9 cut(s) 1168, 1444, 1520, 2620, 2683, 4517, 4786, 4879, 5188
BstXI CCANNNNNNTGG 2 cut(s) 3221, 4876
BstYI RGATCY 9 cut(s) 1168, 1444, 1520, 2620, 2683, 4517, 4786, 4879, 5188
BstZ17I GTATAC 3 cut(s) 845, 2246, 3565
BsuI GTATCC 2 cut(s) 2709, 5635
BsuRI GGCC 7 cut(s) 564, 924, 3054, 3299, 5211, 5243, 5373
BtgI CCRYGG 3 cut(s) 246, 3164, 3693
BtgZI GCGATG 1 cut(s) 2730
BtsI GCAGTG 4 cut(s) 3196, 3604, 4379, 5788
BveI ACCTGC 2 cut(s) 365, 1837
Cac8I GCNNGC 8 cut(s) 148, 926, 971, 1694, 1917, 2010, 4162, 5479
CaiI CAGNNNCTG 1 cut(s) 1306
CciI TCATGA 3 cut(s) 1527, 2908, 5251
CfoI GCGC 4 cut(s) 1104, 1898, 4088, 5447
Cfr10I RCCGGY 1 cut(s) 3567
Cfr13I GGNCC 8 cut(s) 337, 429, 686, 3383, 4221, 4757, 5372, 5888
Cfr9I CCCGGG 1 cut(s) 4217
CseI GACGC 1 cut(s) 3545
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
DraI TTTAAA 3 cut(s) 711, 1206, 1683
DriI GACNNNNNGTC 1 cut(s) 4265
EaeI YGGCCR 2 cut(s) 922, 5241
Eam1104I CTCTTC 5 cut(s) 357, 477, 485, 1503, 5139
Eam1105I GACNNNNNGTC 1 cut(s) 4265
EarI CTCTTC 5 cut(s) 357, 477, 485, 1503, 5139
Eco130I CCWWGG 3 cut(s) 31, 3693, 4359
Eco24I GRGCYC 3 cut(s) 356, 1458, 4181
Eco31I GGTCTC 1 cut(s) 5840
Eco32I GATATC 1 cut(s) 1199
Eco47I GGWCC 7 cut(s) 337, 429, 686, 3383, 4221, 4757, 5888
Eco57I CTGAAG 7 cut(s) 188, 989, 1139, 1351, 2967, 4865, 5361
Eco88I CYCGRG 2 cut(s) 4110, 4217
EcoNI CCTNNNNNAGG 2 cut(s) 3315, 4326
EcoRI GAATTC 3 cut(s) 1343, 4849, 5588
EcoRV GATATC 1 cut(s) 1199
EcoT14I CCWWGG 3 cut(s) 31, 3693, 4359
EcoT22I ATGCAT 2 cut(s) 6, 4989
EcoT38I GRGCYC 3 cut(s) 356, 1458, 4181
ErhI CCWWGG 3 cut(s) 31, 3693, 4359
Esp3I CGTCTC 1 cut(s) 4113
FalI AAGNNNNNCTT 6 cut(s) 4292, 4324, 5133, 5165, 5144, 5176
FaqI GGGAC 8 cut(s) 1033, 1361, 1633, 2899, 4015, 4212, 4234, 5901
FauI CCCGC 1 cut(s) 5397
FbaI TGATCA 5 cut(s) 2956, 3778, 5485, 5509, 5704
FblI GTMKAC 5 cut(s) 844, 1326, 1730, 2245, 3564
FriOI GRGCYC 3 cut(s) 356, 1458, 4181
FspAI RTGCGCAY 1 cut(s) 5446
FspI TGCGCA 2 cut(s) 1103, 5446
GlaI GCGC 4 cut(s) 1103, 1897, 4087, 5446
GsaI CCCAGC 1 cut(s) 4358
GsuI CTGGAG 8 cut(s) 1406, 3300, 3352, 3510, 3798, 4658, 5084, 5705
HaeIII GGCC 7 cut(s) 564, 924, 3054, 3299, 5211, 5243, 5373
HgaI GACGC 1 cut(s) 3545
HhaI GCGC 4 cut(s) 1104, 1898, 4088, 5447
Hin1I GRCGYC 1 cut(s) 4119
Hin6I GCGC 4 cut(s) 1102, 1896, 4086, 5445
HinP1I GCGC 4 cut(s) 1102, 1896, 4086, 5445
HincII GTYRAC 1 cut(s) 3349
HindII GTYRAC 1 cut(s) 3349
HindIII AAGCTT 3 cut(s) 452, 1177, 3504
HpaI GTTAAC 1 cut(s) 3349
HphI GGTGA 9 cut(s) 1044, 1421, 2888, 3428, 3503, 4886, 5504, 5566, 5855
HpyCH4IV ACGT 7 cut(s) 312, 1716, 1727, 3118, 4119, 5312, 5835
HpySE526I ACGT 7 cut(s) 312, 1716, 1727, 3118, 4119, 5312, 5835
Hsp92I GRCGYC 1 cut(s) 4119
HspAI GCGC 4 cut(s) 1102, 1896, 4086, 5445
Kpn2I TCCGGA 3 cut(s) 1570, 1711, 3988
KpnI GGTACC 1 cut(s) 1853
Ksp22I TGATCA 5 cut(s) 2956, 3778, 5485, 5509, 5704
KspAI GTTAAC 1 cut(s) 3349
LguI GCTCTTC 1 cut(s) 5139
LmnI GCTCC 6 cut(s) 1797, 2036, 2075, 2419, 4677, 5090
MaeII ACGT 7 cut(s) 312, 1716, 1727, 3118, 4119, 5312, 5835
MaeIII GTNAC 8 cut(s) 241, 281, 906, 1334, 2660, 3913, 4597, 4907
MfeI CAATTG 3 cut(s) 1437, 4854, 5073
MflI RGATCY 9 cut(s) 1168, 1444, 1520, 2620, 2683, 4517, 4786, 4879, 5188
MhlI GDGCHC 6 cut(s) 356, 1074, 1458, 2954, 4181, 5727
MlsI TGGCCA 1 cut(s) 924
MluNI TGGCCA 1 cut(s) 924
MlyI GAGTC 3 cut(s) 476, 1714, 2881
MmeI TCCRAC 8 cut(s) 27, 148, 303, 325, 396, 2393, 3642, 5166
Mox20I TGGCCA 1 cut(s) 924
Mph1103I ATGCAT 2 cut(s) 6, 4989
MroI TCCGGA 3 cut(s) 1570, 1711, 3988
MroXI GAANNNNTTC 5 cut(s) 126, 2187, 2289, 4238, 4974
MscI TGGCCA 1 cut(s) 924
MslI CAYNNNNRTG 6 cut(s) 1614, 2601, 4025, 4311, 5367, 5814
Msp20I TGGCCA 1 cut(s) 924
MspA1I CMGCKG 2 cut(s) 2375, 5044
MspCI CTTAAG 3 cut(s) 1108, 2035, 5150
MunI CAATTG 3 cut(s) 1437, 4854, 5073
Mva1269I GAATGC 3 cut(s) 3498, 4820, 5479
MvnI CGCG 4 cut(s) 2708, 4088, 4646, 5023
NciI CCSGG 4 cut(s) 3414, 4218, 4219, 4287
NcoI CCATGG 1 cut(s) 3693
NheI GCTAGC 1 cut(s) 146
NlaIV GGNNCC 8 cut(s) 430, 1851, 3384, 4222, 4759, 4881, 5117, 5889
NmeAIII GCCGAG 1 cut(s) 2840
NmuCI GTSAC 5 cut(s) 1334, 2660, 3913, 4597, 4907
NsbI TGCGCA 2 cut(s) 1103, 5446
NsiI ATGCAT 2 cut(s) 6, 4989
NspI RCATGY 5 cut(s) 2841, 3241, 4585, 4908, 5526
NspV TTCGAA 2 cut(s) 1185, 5471
OliI CACNNNNGTG 1 cut(s) 4025
PaeR7I CTCGAG 1 cut(s) 4110
PagI TCATGA 3 cut(s) 1527, 2908, 5251
PciI ACATGT 2 cut(s) 4904, 5522
PciSI GCTCTTC 1 cut(s) 5139
PcsI WCGNNNNNNNCGW 1 cut(s) 2712
PctI GAATGC 3 cut(s) 3498, 4820, 5479
PdmI GAANNNNTTC 5 cut(s) 126, 2187, 2289, 4238, 4974
PflFI GACNNNGTC 1 cut(s) 5800
PflMI CCANNNNNTGG 1 cut(s) 1439
PfoI TCCNGGA 3 cut(s) 2277, 4674, 4882
PleI GAGTC 3 cut(s) 475, 1713, 2881
PpsI GAGTC 3 cut(s) 475, 1713, 2881
Ppu21I YACGTR 1 cut(s) 3119
PscI ACATGT 2 cut(s) 4904, 5522
PshAI GACNNNNGTC 1 cut(s) 1368
PshBI ATTAAT 1 cut(s) 2045
PsiI TTATAA 1 cut(s) 2336
PspFI CCCAGC 1 cut(s) 4354
PspN4I GGNNCC 8 cut(s) 430, 1851, 3384, 4222, 4759, 4881, 5117, 5889
PspPI GGNCC 8 cut(s) 337, 429, 686, 3383, 4221, 4757, 5372, 5888
PstI CTGCAG 1 cut(s) 4278
PstNI CAGNNNCTG 1 cut(s) 1306
PsuI RGATCY 9 cut(s) 1168, 1444, 1520, 2620, 2683, 4517, 4786, 4879, 5188
PsyI GACNNNGTC 1 cut(s) 5800
PvuII CAGCTG 1 cut(s) 5044
RseI CAYNNNNRTG 6 cut(s) 1614, 2601, 4025, 4311, 5367, 5814
SapI GCTCTTC 1 cut(s) 5139
Sau96I GGNCC 8 cut(s) 337, 429, 686, 3383, 4221, 4757, 5372, 5888
ScaI AGTACT 2 cut(s) 2500, 5863
SchI GAGTC 3 cut(s) 476, 1714, 2881
SduI GDGCHC 6 cut(s) 356, 1074, 1458, 2954, 4181, 5727
SfcI CTRYAG 3 cut(s) 1472, 1626, 4274
Sfr274I CTCGAG 1 cut(s) 4110
SfuI TTCGAA 2 cut(s) 1185, 5471
SinI GGWCC 7 cut(s) 337, 429, 686, 3383, 4221, 4757, 5888
SlaI CTCGAG 1 cut(s) 4110
SmaI CCCGGG 1 cut(s) 4219
SmiMI CAYNNNNRTG 6 cut(s) 1614, 2601, 4025, 4311, 5367, 5814
SpeI ACTAGT 1 cut(s) 5228
SspI AATATT 6 cut(s) 127, 699, 706, 2636, 3099, 4130
StyI CCWWGG 3 cut(s) 31, 3693, 4359
TaiI ACGT 7 cut(s) 315, 1719, 1730, 3121, 4122, 5315, 5838
TaqII GACCGA 3 cut(s) 3901, 4701, 5864
TatI WGTACW 4 cut(s) 2498, 2856, 4278, 5861
TseFI GTSAC 5 cut(s) 1334, 2660, 3913, 4597, 4907
Tsp45I GTSAC 5 cut(s) 1334, 2660, 3913, 4597, 4907
TspGWI ACGGA 3 cut(s) 926, 3334, 5567
TspMI CCCGGG 1 cut(s) 4217
Tth111I GACNNNGTC 1 cut(s) 5800
Van91I CCANNNNNTGG 1 cut(s) 1439
Vha464I CTTAAG 3 cut(s) 1108, 2035, 5150
VneI GTGCAC 2 cut(s) 1070, 2950
VpaK11BI GGWCC 7 cut(s) 337, 429, 686, 3383, 4221, 4757, 5888
VspI ATTAAT 1 cut(s) 2045
XagI CCTNNNNNAGG 2 cut(s) 3315, 4326
XbaI TCTAGA 1 cut(s) 4793
XceI RCATGY 5 cut(s) 2841, 3241, 4585, 4908, 5526
XcmI CCANNNNNNNNNTGG 3 cut(s) 1513, 3376, 5219
XhoI CTCGAG 1 cut(s) 4110
XmaI CCCGGG 1 cut(s) 4217
XmaJI CCTAGG 1 cut(s) 31
XmiI GTMKAC 5 cut(s) 844, 1326, 1730, 2245, 3564
XmnI GAANNNNTTC 5 cut(s) 126, 2187, 2289, 4238, 4974
ZraI GACGTC 1 cut(s) 4120
ZrmI AGTACT 2 cut(s) 2500, 5863
Zsp2I ATGCAT 2 cut(s) 6, 4989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.