Rh4BG299800

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001545
Physical Location & Seq
Forward (+)
47113858 .. 47123050
9193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG299800.1

Sequence Viewer

Length: 891 bp
ATGGAGCTATTTTCTCAGGGTGGTTGTTTTCAATTTTTTTTGGGGCTGAAACTGATATTGCTTCATGATCATTTCGTGAAAAGGTTGAATAAATGCTTCATCGAGGCTAAAATCAACATCAAAAGAACAGGGGTGGAGGTGGTAGCATGTAGGGCGAGGCTGTTGTACTCGGCAGAAGTGCCAGAATTTGTCGGGACTCTCGTTCGCCTTTGGAATCATGAACAAGTGGGGCATCTGGCAAATCCATCATCGAGCAAGTGCACTGATCAGTCAAAAGTTTATCATTTTGCTTCAGAAACAAGTTTCTTGATTGAAATTGAACGCCAGATTTTCAGAAATTTAAGTTCAACCAGGATGGAAGGTCATGAAGTGAGAACAAGGGTAGAGGCATTGCTGCTTGAAGAAATATTTGAGGAAATTCCGGAGTGGTTCACAGAACAACAATCATCTGAGACTCTGGTGTCCCCACTACCTACAAATCTTAGAAAGGATGAGAGTTTCCTGGGATTTGTTGTGTGCGCGGTTTTTTCAGTTGAGCCGTCTCGAGCTGACGTCCTCAAATATTTGTATTCAGGACACCATCCCAGACTTGATTGCAATTTTCATTTGAGCCCTGAAATACCGTGTAGCTTAGAGGTTGGCAGCTTGCCTGGGACCAGTCCCAAGAACAAATTCATGTGGTTATATCTTAGACGGTTTGTCTGGCTGCAGTACATACCGGGTCATTATTTTAAGGATCACTTGAATGAACTCCCTGAGTTTGGGGTTTCATTTACGAGTGATTCCCCAGCCTTGGCTGTAAAGCAATACGGATTCCGTATCCTATACGACCGGCCAAGAGGTGCAAGAATACTGGAAAGCAACAGTGCAGTGCTTCACTTCCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

296

Amino Acids

34.18

Weight (kDa)

6.64

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 138 - 278 2.1e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AatII GACGTC 1 cut(s) 555
AccII CGCG 1 cut(s) 521
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 1 cut(s) 521
AclWI GGATC 1 cut(s) 744
AcoI YGGCCR 1 cut(s) 833
AcsI RAATTY 4 cut(s) 185, 337, 417, 671
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 2 cut(s) 167, 713
AfiI CCNNNNNNNGG 2 cut(s) 761, 793
AgsI TTSAA 7 cut(s) 32, 88, 314, 320, 348, 401, 745
AhdI GACNNNNNGTC 1 cut(s) 698
AjnI CCWGG 3 cut(s) 350, 501, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 4 cut(s) 7, 548, 630, 645
AluI AGCT 4 cut(s) 7, 548, 630, 645
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 2 cut(s) 446, 546
Alw44I GTGCAC 1 cut(s) 259
AlwI GGATC 1 cut(s) 744
Ama87I CYCGRG 1 cut(s) 543
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 1 cut(s) 833
ApaLI GTGCAC 1 cut(s) 259
ApeKI GCWGC 3 cut(s) 394, 642, 706
ApoI RAATTY 4 cut(s) 185, 337, 417, 671
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 654
AsuC2I CCSGG 1 cut(s) 720
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 381, 654, 693
BccI CCATC 3 cut(s) 253, 349, 588
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 3 cut(s) 352, 503, 651
BciVI GTATCC 1 cut(s) 830
BclI TGATCA 2 cut(s) 67, 265
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 2 cut(s) 446, 546
BfmI CTRYAG 1 cut(s) 707
BfuI GTATCC 1 cut(s) 830
BisI GCNGC 3 cut(s) 395, 643, 707
BlsI GCNGC 3 cut(s) 396, 644, 708
Bme1390I CCNGG 4 cut(s) 352, 503, 651, 720
Bme18I GGWCC 1 cut(s) 654
BmeRI GACNNNNNGTC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 654
BmiI GGNNCC 1 cut(s) 655
BmrFI CCNGG 4 cut(s) 352, 503, 651, 720
BmsI GCATC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 502, 650, 792
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 793
Bse118I RCCGGY 1 cut(s) 831
Bse1I ACTGG 2 cut(s) 657, 858
Bse3DI GCAATG 1 cut(s) 389
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 3 cut(s) 352, 503, 651
BseDI CCNNGG 3 cut(s) 502, 650, 792
BseGI GGATG 3 cut(s) 360, 496, 580
BseLI CCNNNNNNNGG 2 cut(s) 761, 793
BseMI GCAATG 1 cut(s) 389
BseMII CTCAG 3 cut(s) 29, 441, 747
BseNI ACTGG 2 cut(s) 657, 858
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 3 cut(s) 381, 654, 693
BseYI CCCAGC 1 cut(s) 787
BsgI GTGCAG 1 cut(s) 888
Bsh1236I CGCG 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 1 cut(s) 835
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 3 cut(s) 422, 719, 832
BslFI GGGAC 4 cut(s) 208, 448, 645, 667
BslI CCNNNNNNNGG 2 cut(s) 761, 793
BsmAI GTCTC 2 cut(s) 446, 546
BsmBI CGTCTC 1 cut(s) 546
BsmFI GGGAC 4 cut(s) 208, 448, 645, 667
BsnI GGCC 1 cut(s) 835
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 2 cut(s) 263, 614
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 3 cut(s) 67, 265, 736
BspACI CCGC 1 cut(s) 521
BspANI GGCC 1 cut(s) 835
BspCNI CTCAG 3 cut(s) 28, 442, 748
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 1 cut(s) 521
BspHI TCATGA 3 cut(s) 64, 217, 364
BspLI GGNNCC 1 cut(s) 655
BspMAI CTGCAG 1 cut(s) 711
BspPI GGATC 1 cut(s) 744
BsrDI GCAATG 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 831
BsrI ACTGG 2 cut(s) 657, 858
BssAI RCCGGY 1 cut(s) 831
BssECI CCNNGG 3 cut(s) 502, 650, 792
BssMI GATC 3 cut(s) 67, 265, 736
BssNI GRCGYC 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 3 cut(s) 352, 503, 651
Bst4CI ACNGT 3 cut(s) 624, 696, 866
BstACI GRCGYC 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 6 cut(s) 15, 450, 482, 631, 689, 756
BstF5I GGATG 3 cut(s) 360, 496, 580
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 3 cut(s) 70, 268, 739
BstMAI GTCTC 2 cut(s) 446, 546
BstMBI GATC 3 cut(s) 67, 265, 736
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 3 cut(s) 352, 503, 651
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 4 cut(s) 350, 501, 649, 718
BstSFI CTRYAG 1 cut(s) 707
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 381, 654, 693
BsuI GTATCC 1 cut(s) 830
BsuRI GGCC 1 cut(s) 835
BtsCI GGATG 3 cut(s) 360, 496, 580
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 3 cut(s) 261, 871, 876
Cac8I GCNNGC 1 cut(s) 647
CciI TCATGA 3 cut(s) 64, 217, 364
CfoI GCGC 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 831
Cfr13I GGNCC 1 cut(s) 654
Csp6I GTAC 2 cut(s) 166, 712
CviAII CATG 5 cut(s) 65, 147, 218, 365, 676
CviQI GTAC 2 cut(s) 166, 712
DdeI CTNAG 6 cut(s) 15, 450, 482, 631, 689, 756
DpnI GATC 3 cut(s) 69, 267, 738
DpnII GATC 3 cut(s) 67, 265, 736
DrdI GACNNNNNNGTC 1 cut(s) 460
DriI GACNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 833
Eam1105I GACNNNNNGTC 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 614
Eco47I GGWCC 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 543
EcoRII CCWGG 3 cut(s) 350, 501, 649
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 792
Esp3I CGTCTC 1 cut(s) 546
FaeI CATG 5 cut(s) 68, 150, 221, 368, 679
FaiI YATR 8 cut(s) 66, 148, 219, 366, 677, 685, 716, 826
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 4 cut(s) 208, 448, 645, 667
FatI CATG 5 cut(s) 64, 146, 217, 364, 675
FbaI TGATCA 2 cut(s) 67, 265
Fnu4HI GCNGC 3 cut(s) 395, 643, 707
FokI GGATG 3 cut(s) 367, 503, 567
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 3 cut(s) 395, 643, 707
GlaI GCGC 1 cut(s) 520
GluI GCNGC 3 cut(s) 395, 643, 707
GsaI CCCAGC 1 cut(s) 791
HaeIII GGCC 1 cut(s) 835
HapII CCGG 3 cut(s) 422, 719, 832
HhaI GCGC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 5 cut(s) 68, 150, 221, 368, 679
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HinfI GANTC 5 cut(s) 196, 214, 454, 782, 813
HpaII CCGG 3 cut(s) 422, 719, 832
Hpy166II GTNNAC 2 cut(s) 261, 432
Hpy188I TCNGA 3 cut(s) 295, 335, 451
Hpy188III TCNNGA 9 cut(s) 65, 76, 193, 218, 307, 365, 422, 543, 573
Hpy8I GTNNAC 2 cut(s) 261, 432
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 3 cut(s) 624, 696, 866
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 5 cut(s) 261, 597, 709, 845, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 6 cut(s) 15, 450, 482, 631, 689, 756
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 5 cut(s) 68, 150, 221, 368, 679
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 421
Ksp22I TGATCA 2 cut(s) 67, 265
Kzo9I GATC 3 cut(s) 67, 265, 736
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 3 cut(s) 381, 654, 693
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 552
MalI GATC 3 cut(s) 69, 267, 738
MboI GATC 3 cut(s) 67, 265, 736
MboII GAAGA 1 cut(s) 413
MhlI GDGCHC 2 cut(s) 263, 614
MluCI AATT 7 cut(s) 32, 185, 315, 337, 417, 598, 671
MlyI GAGTC 2 cut(s) 190, 448
MnlI CCTC 8 cut(s) 97, 130, 150, 379, 406, 566, 628, 833
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 2 cut(s) 341, 732
MslI CAYNNNNRTG 1 cut(s) 744
MspI CCGG 3 cut(s) 422, 719, 832
MspR9I CCNGG 4 cut(s) 352, 503, 651, 720
MvaI CCWGG 3 cut(s) 352, 503, 651
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 720
NdeII GATC 3 cut(s) 67, 265, 736
NlaIII CATG 5 cut(s) 68, 150, 221, 368, 679
NlaIV GGNNCC 1 cut(s) 655
NmeAIII GCCGAG 1 cut(s) 149
NspI RCATGY 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 543
PagI TCATGA 3 cut(s) 64, 217, 364
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 3 cut(s) 214, 782, 813
PkrI GCNGC 3 cut(s) 396, 644, 708
PleI GAGTC 2 cut(s) 190, 448
PpsI GAGTC 2 cut(s) 190, 448
Psp6I CCWGG 3 cut(s) 350, 501, 649
PspFI CCCAGC 1 cut(s) 787
PspGI CCWGG 3 cut(s) 350, 501, 649
PspN4I GGNNCC 1 cut(s) 655
PspPI GGNCC 1 cut(s) 654
PstI CTGCAG 1 cut(s) 711
RsaI GTAC 2 cut(s) 167, 713
RsaNI GTAC 2 cut(s) 166, 712
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 2 cut(s) 341, 732
SatI GCNGC 3 cut(s) 395, 643, 707
Sau3AI GATC 3 cut(s) 67, 265, 736
Sau96I GGNCC 1 cut(s) 654
SchI GAGTC 2 cut(s) 190, 448
ScrFI CCNGG 4 cut(s) 352, 503, 651, 720
SduI GDGCHC 2 cut(s) 263, 614
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 707
Sfr274I CTCGAG 1 cut(s) 543
SinI GGWCC 1 cut(s) 654
SlaI CTCGAG 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 7 cut(s) 32, 185, 315, 337, 417, 598, 671
SsiI CCGC 1 cut(s) 521
SspI AATATT 2 cut(s) 408, 563
StyD4I CCNGG 4 cut(s) 350, 501, 649, 718
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 624, 696, 866
TaiI ACGT 1 cut(s) 555
TaqI TCGA 3 cut(s) 102, 251, 544
TasI AATT 7 cut(s) 32, 185, 315, 337, 417, 598, 671
TatI WGTACW 2 cut(s) 165, 711
TfiI GAWTC 3 cut(s) 214, 782, 813
Tru1I TTAA 2 cut(s) 341, 732
Tru9I TTAA 2 cut(s) 341, 732
TscAI CASTG 3 cut(s) 268, 871, 876
TseI GCWGC 3 cut(s) 394, 642, 706
TspDTI ATGAA 8 cut(s) 53, 88, 234, 381, 593, 664, 759, 762
TspGWI ACGGA 2 cut(s) 806, 825
TspRI CASTG 3 cut(s) 268, 871, 876
VneI GTGCAC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 654
XapI RAATTY 4 cut(s) 185, 337, 417, 671
XceI RCATGY 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 543
XmnI GAANNNNTTC 1 cut(s) 671
ZraI GACGTC 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.